Wall clock time and date at job start Fri Apr 10 2020 14:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47149 * 272.90817 * 3 2 1 5 5 H 1.48502 * 109.46858 * 32.90553 * 3 2 1 6 6 H 1.48494 * 109.47186 * 152.90582 * 3 2 1 7 7 C 1.38818 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00267 * 339.41184 * 7 2 1 9 9 N 1.36937 * 119.99512 * 159.41180 * 7 2 1 10 10 C 1.46926 * 120.62571 * 152.73441 * 9 7 2 11 11 C 1.53198 * 108.89429 * 126.46041 * 10 9 7 12 12 C 1.53042 * 109.31086 * 54.55921 * 11 10 9 13 13 O 1.45202 * 109.45954 * 178.61421 * 12 11 10 14 14 C 1.34642 * 117.00148 * 210.00060 * 13 12 11 15 15 O 1.21410 * 120.00110 * 0.02562 * 14 13 12 16 16 C 1.48239 * 120.00225 * 179.97438 * 14 13 12 17 17 N 1.31633 * 127.15623 * 0.02812 * 16 14 13 18 18 O 1.21568 * 111.53662 * 179.97438 * 17 16 14 19 19 C 1.32811 * 111.52956 * 359.96633 * 18 17 16 20 20 C 1.35703 * 106.70657 * 359.83770 * 19 18 17 21 21 C 1.50044 * 123.86307 * 179.47758 * 20 19 18 22 22 O 1.43617 * 107.87655 * 345.80525 * 21 20 19 23 23 C 1.42992 * 114.38204 * 49.80441 * 22 21 20 24 24 C 1.50673 * 130.82422 * 180.18997 * 19 18 17 25 25 C 1.53034 * 109.53807 * 298.63769 * 12 11 10 26 26 C 1.46952 * 120.65918 * 332.54798 * 9 7 2 27 27 H 0.96996 * 120.00085 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.59064 * 6.59800 * 10 9 7 29 29 H 1.09000 * 109.58699 * 246.31802 * 10 9 7 30 30 H 1.08993 * 109.49687 * 174.51178 * 11 10 9 31 31 H 1.08993 * 109.49500 * 294.60918 * 11 10 9 32 32 H 1.08997 * 109.45688 * 58.66053 * 12 11 10 33 33 H 1.08999 * 109.93514 * 226.10996 * 21 20 19 34 34 H 1.09001 * 109.63816 * 105.33127 * 21 20 19 35 35 H 1.09006 * 109.40161 * 169.44833 * 23 22 21 36 36 H 1.09002 * 109.33338 * 49.65818 * 23 22 21 37 37 H 1.08998 * 109.81738 * 283.57097 * 24 19 18 38 38 H 1.08997 * 109.82139 * 44.49856 * 24 19 18 39 39 H 1.09004 * 109.49724 * 181.31230 * 25 12 11 40 40 H 1.08996 * 109.49993 * 301.40992 * 25 12 11 41 41 H 1.08999 * 109.46884 * 113.75329 * 26 9 7 42 42 H 1.09007 * 109.71303 * 353.47008 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4362 2.0819 -1.3983 5 1 1.4797 2.6341 0.7606 6 1 3.5771 1.4232 0.6376 7 6 2.0103 -1.2022 0.0005 8 1 1.5220 -2.1075 0.3298 9 7 3.3140 -1.2402 -0.4165 10 6 4.2342 -2.2646 0.0958 11 6 4.8778 -2.9908 -1.0897 12 6 5.5331 -1.9645 -2.0167 13 8 6.1724 -2.6519 -3.1244 14 6 7.2597 -2.0666 -3.6614 15 8 7.6632 -1.0115 -3.2165 16 6 7.9647 -2.7112 -4.7949 17 7 7.6524 -3.8465 -5.3834 18 8 8.4244 -4.1089 -6.2851 19 6 9.3582 -3.1734 -6.4150 20 6 9.1036 -2.2341 -5.4693 21 6 9.9381 -1.0036 -5.2671 22 8 11.1702 -1.1841 -5.9825 23 6 11.0088 -1.6063 -7.3391 24 6 10.5106 -3.0592 -7.3789 25 6 4.4671 -1.0085 -2.5568 26 6 3.8189 -0.2599 -1.3879 27 1 -0.4850 0.8400 0.0004 28 1 3.6822 -2.9794 0.7062 29 1 5.0091 -1.7912 0.6987 30 1 5.6338 -3.6855 -0.7238 31 1 4.1130 -3.5405 -1.6383 32 1 6.2806 -1.3984 -1.4609 33 1 10.1444 -0.8647 -4.2059 34 1 9.4089 -0.1340 -5.6570 35 1 11.9660 -1.5375 -7.8561 36 1 10.2828 -0.9610 -7.8339 37 1 11.3124 -3.7333 -7.0778 38 1 10.1761 -3.3078 -8.3860 39 1 4.9308 -0.2922 -3.2351 40 1 3.7061 -1.5768 -3.0916 41 1 4.5598 0.3792 -0.9075 42 1 2.9944 0.3502 -1.7570 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857848471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:54 Heat of formation + Delta-G solvation = -55.490940 kcal Electronic energy + Delta-G solvation = -27391.981648 eV Core-core repulsion = 23340.940604 eV Total energy + Delta-G solvation = -4051.041045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.51046 -41.85361 -39.97547 -39.41632 -37.63529 -35.49901 -34.68974 -34.31392 -32.51559 -32.15585 -31.73285 -28.14633 -27.33490 -26.10681 -25.04020 -24.59646 -23.77851 -22.47850 -21.49658 -21.29865 -19.32416 -19.10600 -18.91474 -18.69521 -17.85773 -17.26186 -17.18270 -17.00379 -16.59982 -16.04460 -15.94048 -15.54823 -15.34572 -15.02576 -14.73053 -14.65633 -14.52540 -14.32289 -13.99768 -13.85560 -13.58946 -13.11348 -12.91184 -12.82993 -12.64901 -12.46001 -12.33107 -12.24200 -12.09274 -12.02400 -11.72176 -11.67325 -11.61887 -11.24360 -10.96105 -10.78328 -10.39033 -9.06938 -8.21118 -5.54925 -0.38851 0.26312 1.04351 1.26642 1.38239 1.46870 1.48282 1.67341 2.37171 2.49211 2.71962 2.96045 3.21297 3.30996 3.38374 3.56748 3.58439 3.63022 3.85495 3.94053 4.02496 4.12173 4.16041 4.29919 4.30367 4.39227 4.48129 4.52590 4.63033 4.65911 4.72890 4.75967 4.79539 4.88510 4.94780 4.97351 4.99261 5.07582 5.33183 5.80509 5.97196 6.08206 6.22972 6.72262 6.82555 7.53803 7.93844 8.98294 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.026342 B = 0.002787 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.702709 B =10044.113294 C =10570.162696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.032 4.032 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.307 1.307 6 H -0.259 1.259 7 C -0.252 4.252 8 H 0.059 0.941 9 N -0.620 5.620 10 C 0.148 3.852 11 C -0.119 4.119 12 C 0.102 3.898 13 O -0.342 6.342 14 C 0.547 3.453 15 O -0.498 6.498 16 C -0.013 4.013 17 N -0.334 5.334 18 O 0.156 5.844 19 C -0.009 4.009 20 C -0.214 4.214 21 C 0.143 3.857 22 O -0.386 6.386 23 C 0.049 3.951 24 C -0.065 4.065 25 C -0.140 4.140 26 C 0.127 3.873 27 H 0.263 0.737 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.147 0.853 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.142 0.858 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.372 -5.878 -18.172 33.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.227 4.227 3 Si 0.769 3.231 4 H -0.203 1.203 5 H -0.236 1.236 6 H -0.183 1.183 7 C -0.381 4.381 8 H 0.076 0.924 9 N -0.345 5.345 10 C 0.023 3.977 11 C -0.158 4.158 12 C 0.049 3.951 13 O -0.258 6.258 14 C 0.389 3.611 15 O -0.385 6.385 16 C -0.167 4.167 17 N -0.032 5.032 18 O 0.077 5.923 19 C -0.074 4.074 20 C -0.219 4.219 21 C 0.066 3.934 22 O -0.304 6.304 23 C -0.027 4.027 24 C -0.103 4.103 25 C -0.180 4.180 26 C 0.002 3.998 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.165 0.835 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 26.461 -6.296 -17.592 32.393 hybrid contribution -0.532 1.431 0.388 1.575 sum 25.929 -4.865 -17.204 31.495 Atomic orbital electron populations 1.69957 1.07330 1.27323 1.55279 1.25887 0.95826 1.00881 1.00113 0.85998 0.78996 0.80490 0.77576 1.20318 1.23598 1.18336 1.18877 0.86490 0.93825 1.38900 0.92366 1.44554 1.08218 1.34515 1.47191 1.21102 0.92246 0.90790 0.93549 1.22093 1.00248 0.97335 0.96160 1.22880 0.93481 0.94112 0.84670 1.86666 1.39464 1.51637 1.47993 1.19714 0.78520 0.82216 0.80637 1.90831 1.65796 1.21733 1.60144 1.21686 0.99216 0.95537 1.00285 1.74881 1.12385 1.15433 1.00549 1.84688 1.28940 1.40590 1.38073 1.24892 0.94819 0.87636 1.00072 1.21566 0.98115 1.03397 0.98862 1.20917 0.83098 0.90581 0.98792 1.88135 1.28249 1.88135 1.25904 1.23160 1.05050 0.91967 0.82511 1.21449 0.90314 1.00619 0.97904 1.22342 0.98013 0.98641 0.98990 1.21326 0.96922 0.92048 0.89488 0.92819 0.90578 0.93660 0.88528 0.91532 0.89394 0.87204 0.89757 0.83506 0.91305 0.85450 0.84028 0.91042 0.91570 0.94254 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.17 13.97 21.65 0.30 -59.86 16 2 C -0.03 -1.88 5.23 84.86 0.44 -1.43 16 3 Si 0.94 46.80 24.35 68.60 1.67 48.47 16 4 H -0.28 -13.10 6.62 99.48 0.66 -12.44 16 5 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16 6 H -0.26 -12.30 6.63 99.48 0.66 -11.64 16 7 C -0.25 -14.29 10.04 84.03 0.84 -13.45 16 8 H 0.06 3.58 8.05 -2.91 -0.02 3.55 16 9 N -0.62 -29.39 2.78 -699.00 -1.94 -31.33 16 10 C 0.15 5.58 6.51 86.36 0.56 6.15 16 11 C -0.12 -3.90 5.74 30.67 0.18 -3.72 16 12 C 0.10 3.48 2.42 30.62 0.07 3.55 16 13 O -0.34 -11.40 9.89 -55.51 -0.55 -11.95 16 14 C 0.55 17.14 7.96 70.48 0.56 17.70 16 15 O -0.50 -16.45 15.55 20.13 0.31 -16.14 16 16 C -0.01 -0.36 7.23 42.43 0.31 -0.06 16 17 N -0.33 -8.83 12.16 -49.00 -0.60 -9.43 16 18 O 0.16 3.05 11.17 81.74 0.91 3.96 16 19 C -0.01 -0.14 7.50 25.09 0.19 0.05 16 20 C -0.21 -4.38 6.15 -20.06 -0.12 -4.50 16 21 C 0.14 2.53 6.67 71.03 0.47 3.00 16 22 O -0.39 -5.47 10.76 -148.98 -1.60 -7.07 16 23 C 0.05 0.26 6.77 72.20 0.49 0.75 16 24 C -0.07 -0.27 6.56 30.06 0.20 -0.07 16 25 C -0.14 -5.29 5.72 30.67 0.18 -5.11 16 26 C 0.13 5.58 4.20 86.36 0.36 5.95 16 27 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 28 H 0.08 2.83 7.93 -2.38 -0.02 2.81 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.09 2.95 7.16 -2.39 -0.02 2.93 16 33 H 0.11 2.15 8.00 -2.39 -0.02 2.14 16 34 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.15 -0.11 8.14 -2.38 -0.02 -0.13 16 36 H 0.07 0.31 8.09 -2.39 -0.02 0.30 16 37 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.14 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.04 1.66 7.07 -2.39 -0.02 1.65 16 42 H 0.06 2.81 4.51 -2.38 -0.01 2.80 16 Total: -1.00 -73.82 342.08 4.19 -69.63 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.95 Total: 4.93 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 4.73 Total: 8.81 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -2.23 Total: -100.62 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.93 Total: -31.21 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.67 Total: 48.47 kcal Total: -73.82 4.19 -69.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857848471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.138 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds