Wall clock time and date at job start Fri Apr 10 2020 14:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99753 * 2 1 4 4 H 1.48498 * 109.46965 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47448 * 300.00148 * 3 2 1 6 6 H 1.48498 * 109.47072 * 60.00448 * 3 2 1 7 7 C 1.37877 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99960 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00178 * 0.02562 * 7 2 1 10 10 N 1.46894 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00054 * 189.99555 * 10 9 7 12 12 N 1.46501 * 109.46979 * 84.70581 * 11 10 9 13 13 C 1.47129 * 124.32857 * 82.92296 * 12 11 10 14 14 C 1.53047 * 105.18877 * 195.70428 * 13 12 11 15 15 C 1.52490 * 116.66659 * 206.79360 * 14 13 12 16 16 O 1.44491 * 84.98939 * 219.56348 * 15 14 13 17 17 C 1.44485 * 93.63133 * 23.07604 * 16 15 14 18 18 C 1.53193 * 103.43984 * 336.18095 * 14 13 12 19 19 C 1.34824 * 124.47378 * 262.94884 * 12 11 10 20 20 O 1.21281 * 124.88623 * 359.62644 * 19 12 11 21 21 C 1.46905 * 111.00077 * 66.04762 * 10 9 7 22 22 C 1.52995 * 109.46987 * 201.08235 * 21 10 9 23 23 F 1.39895 * 109.47401 * 53.68183 * 22 21 10 24 24 F 1.39903 * 109.47080 * 173.68018 * 22 21 10 25 25 F 1.39904 * 109.47329 * 293.67896 * 22 21 10 26 26 H 0.96996 * 120.00351 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47275 * 59.99691 * 9 7 2 28 28 H 1.08997 * 109.46704 * 299.99791 * 9 7 2 29 29 H 1.08998 * 109.47111 * 324.71424 * 11 10 9 30 30 H 1.08997 * 109.47388 * 204.71145 * 11 10 9 31 31 H 1.09003 * 110.31672 * 76.74961 * 13 12 11 32 32 H 1.08995 * 110.31933 * 314.66457 * 13 12 11 33 33 H 1.09002 * 113.94463 * 333.57376 * 15 14 13 34 34 H 1.09001 * 113.95158 * 105.55235 * 15 14 13 35 35 H 1.08992 * 113.95382 * 222.91510 * 17 16 15 36 36 H 1.09007 * 113.94809 * 90.93430 * 17 16 15 37 37 H 1.09003 * 110.55878 * 141.81076 * 18 14 13 38 38 H 1.08997 * 110.56019 * 264.64463 * 18 14 13 39 39 H 1.09007 * 109.46847 * 321.08029 * 21 10 9 40 40 H 1.09001 * 109.46995 * 81.07836 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5213 -4.8933 -0.2419 12 7 1.3637 -5.1004 -1.6836 13 6 2.4079 -5.6511 -2.5617 14 6 1.9556 -5.3120 -3.9840 15 6 2.4400 -6.2374 -5.0951 16 8 2.6001 -5.0238 -5.8628 17 6 2.7045 -4.1866 -4.6898 18 6 0.4393 -5.1437 -3.8448 19 6 0.2449 -4.8115 -2.3783 20 8 -0.7699 -4.3517 -1.8991 21 6 2.9710 -3.6551 1.2506 22 6 4.2648 -4.4423 1.0335 23 9 4.9602 -3.9056 -0.0552 24 9 5.0598 -4.3586 2.1817 25 9 3.9575 -5.7826 0.7758 26 1 -0.4850 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6241 -2.5575 0.8880 29 1 0.5397 -4.8739 0.2317 30 1 2.1121 -5.7065 0.1796 31 1 2.4785 -6.7314 -2.4345 32 1 3.3683 -5.1821 -2.3480 33 1 3.3776 -6.7456 -4.8702 34 1 1.6706 -6.9065 -5.4805 35 1 2.1415 -3.2559 -4.7589 36 1 3.7260 -4.0453 -4.3366 37 1 0.0858 -4.3258 -4.4727 38 1 -0.0736 -6.0714 -4.0983 39 1 3.2120 -2.6384 1.5613 40 1 2.3760 -4.1401 2.0245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872587846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:03 Heat of formation + Delta-G solvation = -178.009793 kcal Electronic energy + Delta-G solvation = -29385.641069 eV Core-core repulsion = 24787.430468 eV Total energy + Delta-G solvation = -4598.210601 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.129 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.77647 -47.38384 -47.14318 -41.36479 -39.07110 -36.86161 -35.48089 -32.72918 -31.65460 -28.98941 -28.15426 -27.28337 -26.76321 -25.14602 -23.77567 -22.95052 -20.94445 -19.43725 -19.38580 -18.22070 -18.11432 -17.11548 -16.73031 -16.47699 -16.30095 -15.93190 -15.77355 -15.19902 -14.76099 -14.66590 -14.37548 -14.18453 -14.00160 -13.79269 -13.58592 -13.40958 -13.39461 -13.21381 -13.06455 -12.98971 -12.54921 -12.04743 -11.98337 -11.85579 -11.78369 -11.65421 -11.05117 -10.90618 -10.78231 -10.65082 -10.53749 -10.03260 -9.91373 -9.40842 -9.33450 -8.63773 -8.46356 -7.75147 -6.09395 -4.14349 2.85460 3.10448 3.25843 3.26838 3.34489 3.38174 3.52141 3.99054 4.10087 4.23380 4.31925 4.41693 4.42871 4.56511 4.83322 4.98023 5.19476 5.21085 5.25311 5.39643 5.42332 5.46777 5.47162 5.58935 5.67932 5.73582 5.79736 5.92428 5.94836 5.95069 6.03169 6.60521 7.02780 7.08458 7.41097 7.61898 7.77301 7.96488 8.29099 8.52191 8.92596 9.50779 11.00165 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.009318 B = 0.005973 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3004.248664 B = 4686.832151 C = 6159.508843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.198 3.802 10 N -0.545 5.545 11 C 0.271 3.729 12 N -0.602 5.602 13 C 0.117 3.883 14 C -0.144 4.144 15 C 0.056 3.944 16 O -0.382 6.382 17 C 0.057 3.943 18 C -0.126 4.126 19 C 0.519 3.481 20 O -0.517 6.517 21 C 0.021 3.979 22 C 0.451 3.549 23 F -0.172 7.172 24 F -0.191 7.191 25 F -0.193 7.193 26 H 0.262 0.738 27 H 0.049 0.951 28 H -0.003 1.003 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.134 0.866 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -14.280 -3.871 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.074 3.926 10 N -0.272 5.272 11 C 0.060 3.940 12 N -0.337 5.337 13 C -0.007 4.007 14 C -0.145 4.145 15 C -0.021 4.021 16 O -0.301 6.301 17 C -0.019 4.019 18 C -0.167 4.167 19 C 0.305 3.695 20 O -0.391 6.391 21 C -0.110 4.110 22 C 0.396 3.604 23 F -0.154 7.154 24 F -0.173 7.173 25 F -0.175 7.175 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.015 0.985 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.112 0.888 35 H 0.117 0.883 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.152 0.848 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.486 -13.780 -4.198 15.798 hybrid contribution 0.175 0.724 0.806 1.097 sum 6.661 -13.057 -3.392 15.045 Atomic orbital electron populations 1.69991 1.06034 1.26873 1.49720 1.24985 0.94811 0.99316 0.95127 0.86477 0.80081 0.83462 0.77640 1.19581 1.20942 1.21009 1.21138 0.93398 0.89815 1.51583 0.91729 1.19870 0.89195 0.85963 0.97526 1.61786 1.29856 1.04870 1.30639 1.22125 0.99133 0.92742 0.80040 1.48342 1.14195 1.62887 1.08256 1.21870 0.92818 0.98465 0.87514 1.23644 0.97103 0.98072 0.95684 1.23761 1.00644 0.89400 0.88262 1.89756 1.94781 1.18124 1.27440 1.23884 1.00336 0.95065 0.82648 1.21998 0.94069 1.04933 0.95661 1.20928 0.83121 0.76827 0.88610 1.90782 1.30034 1.43362 1.74950 1.23109 0.90332 1.03368 0.94170 1.21005 0.87998 0.77701 0.73652 1.93181 1.81145 1.85673 1.55352 1.93146 1.76920 1.96143 1.51074 1.93036 1.92631 1.37683 1.94134 0.92781 0.93349 0.98492 0.91650 0.89125 0.91021 0.89592 0.89561 0.88809 0.88350 0.89109 0.87538 0.87597 0.84775 0.91117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -13.89 8.22 -34.44 -0.28 -14.17 16 8 H 0.06 1.69 7.33 -52.49 -0.38 1.31 16 9 C 0.20 4.92 4.55 -4.98 -0.02 4.90 16 10 N -0.54 -10.58 4.33 -239.98 -1.04 -11.62 16 11 C 0.27 4.59 5.56 -63.31 -0.35 4.23 16 12 N -0.60 -9.59 3.19 -176.24 -0.56 -10.15 16 13 C 0.12 1.40 6.83 -3.67 -0.03 1.38 16 14 C -0.14 -1.62 1.15 -154.90 -0.18 -1.80 16 15 C 0.06 0.51 8.59 36.88 0.32 0.83 16 16 O -0.38 -4.77 12.46 -35.23 -0.44 -5.21 16 17 C 0.06 0.70 8.49 36.89 0.31 1.01 16 18 C -0.13 -1.62 6.31 -27.33 -0.17 -1.79 16 19 C 0.52 9.13 7.51 -10.51 -0.08 9.05 16 20 O -0.52 -11.62 16.69 5.56 0.09 -11.53 16 21 C 0.02 0.35 4.89 -3.82 -0.02 0.33 16 22 C 0.45 6.82 3.28 37.16 0.12 6.94 16 23 F -0.17 -2.87 17.12 2.25 0.04 -2.84 16 24 F -0.19 -2.80 17.32 2.25 0.04 -2.76 16 25 F -0.19 -2.68 14.68 2.25 0.03 -2.65 16 26 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.05 1.37 6.65 -51.93 -0.35 1.02 16 28 H 0.00 -0.07 8.12 -51.93 -0.42 -0.50 16 29 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 30 H 0.09 1.30 5.23 -51.93 -0.27 1.03 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.10 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.09 1.04 8.01 -51.93 -0.42 0.62 16 37 H 0.11 1.41 7.93 -51.93 -0.41 1.00 16 38 H 0.11 1.08 8.10 -51.93 -0.42 0.66 16 39 H 0.13 2.45 6.58 -51.93 -0.34 2.10 16 40 H 0.07 1.04 7.98 -51.93 -0.41 0.62 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -32.36 342.81 -6.48 -38.84 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.04 Total: -0.43 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -0.48 Total: 12.48 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.87 Total: -47.20 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.35 Total: -16.74 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.11 Total: -8.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.36 -6.48 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872587846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.172 kcal (2) G-P(sol) polarization free energy of solvation -32.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds