Wall clock time and date at job start Fri Apr 10 2020 14:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48506 * 109.46734 * 269.99575 * 3 2 1 5 5 H 1.48495 * 109.47515 * 29.99416 * 3 2 1 6 6 H 1.48503 * 109.47110 * 149.99714 * 3 2 1 7 7 C 1.38810 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 185.50729 * 7 2 1 9 9 N 1.36936 * 120.00105 * 5.51168 * 7 2 1 10 10 C 1.46965 * 120.76925 * 34.69415 * 9 7 2 11 11 C 1.53096 * 108.61797 * 125.69115 * 10 9 7 12 12 C 1.53159 * 109.58176 * 55.34271 * 11 10 9 13 13 H 1.09001 * 110.65322 * 60.96737 * 12 11 10 14 14 C 1.53143 * 109.58930 * 299.42229 * 12 11 10 15 15 H 1.08999 * 109.24943 * 178.79620 * 14 12 11 16 16 C 1.52851 * 109.36508 * 298.32576 * 14 12 11 17 17 C 1.53118 * 109.34454 * 297.97533 * 16 14 12 18 18 C 1.53140 * 109.48058 * 60.64689 * 17 16 14 19 19 N 1.46948 * 109.02776 * 305.93738 * 18 17 16 20 20 C 1.34783 * 120.84028 * 233.98780 * 19 18 17 21 21 O 1.21570 * 119.99632 * 173.33100 * 20 19 18 22 22 C 1.47751 * 120.00425 * 353.33208 * 20 19 18 23 23 C 1.39344 * 124.11759 * 172.50161 * 22 20 19 24 24 N 1.30097 * 112.14336 * 179.82257 * 23 22 20 25 25 S 1.55918 * 108.75512 * 0.42533 * 24 23 22 26 26 N 1.31496 * 124.11006 * 352.80057 * 22 20 19 27 27 C 1.45156 * 121.16051 * 214.67394 * 9 7 2 28 28 H 0.96998 * 119.99924 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.61816 * 5.94353 * 10 9 7 30 30 H 1.09002 * 109.75507 * 245.51024 * 10 9 7 31 31 H 1.09001 * 109.45096 * 295.31097 * 11 10 9 32 32 H 1.09001 * 109.45814 * 175.38370 * 11 10 9 33 33 H 1.09000 * 109.49649 * 57.93150 * 16 14 12 34 34 H 1.09000 * 109.49969 * 178.01168 * 16 14 12 35 35 H 1.09000 * 109.47402 * 180.65205 * 17 16 14 36 36 H 1.09003 * 109.46911 * 300.64617 * 17 16 14 37 37 H 1.09002 * 109.54530 * 65.79452 * 18 17 16 38 38 H 1.09000 * 109.55081 * 186.07103 * 18 17 16 39 39 H 1.08002 * 123.92838 * 359.97438 * 23 22 20 40 40 H 1.09000 * 108.96845 * 113.61584 * 27 9 7 41 41 H 1.08995 * 109.13343 * 354.01844 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0865 -1.2042 0.0903 9 7 1.3303 -2.3854 -0.1128 10 6 0.1197 -2.4805 -0.9406 11 6 0.3032 -3.6207 -1.9457 12 6 0.6389 -4.9147 -1.1982 13 1 -0.1702 -5.1886 -0.5211 14 6 1.9411 -4.7313 -0.4135 15 1 2.1634 -5.6478 0.1331 16 6 3.0820 -4.4357 -1.3868 17 6 3.2647 -5.6271 -2.3310 18 6 1.9756 -5.8503 -3.1270 19 7 0.8511 -5.9826 -2.1904 20 6 0.0343 -7.0537 -2.2382 21 8 -0.8151 -7.2090 -1.3824 22 6 0.1713 -8.0391 -3.3306 23 6 -0.5198 -9.2479 -3.3840 24 7 -0.2260 -9.9341 -4.4495 25 16 0.8216 -9.1376 -5.2856 26 7 0.9644 -7.8845 -4.3680 27 6 1.7812 -3.5799 0.5777 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0329 -1.5428 -1.4749 30 1 -0.7439 -2.6858 -0.3081 31 1 1.1160 -3.3749 -2.6290 32 1 -0.6180 -3.7572 -2.5121 33 1 2.8431 -3.5447 -1.9675 34 1 4.0031 -4.2698 -0.8280 35 1 4.0855 -5.4232 -3.0186 36 1 3.4917 -6.5204 -1.7491 37 1 1.8025 -5.0000 -3.7867 38 1 2.0657 -6.7607 -3.7195 39 1 -1.2199 -9.5758 -2.6298 40 1 1.0452 -3.8506 1.3347 41 1 2.7389 -3.3758 1.0564 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021525748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:42 Heat of formation + Delta-G solvation = 61.391343 kcal Electronic energy + Delta-G solvation = -25998.754432 eV Core-core repulsion = 22427.827405 eV Total energy + Delta-G solvation = -3570.927027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.47685 -39.90040 -37.94698 -35.70784 -34.02291 -32.68080 -32.25275 -30.11781 -29.71177 -27.70659 -25.58326 -25.04617 -23.23816 -22.29249 -21.87854 -21.30199 -19.80624 -19.54357 -17.87026 -17.00182 -16.64114 -16.39172 -16.06251 -15.42626 -15.04845 -14.65817 -14.53495 -14.00916 -13.77427 -13.52613 -13.12562 -12.95440 -12.67723 -12.44704 -12.37364 -12.18481 -11.61714 -11.54753 -11.44021 -11.30596 -11.04123 -10.86255 -10.69159 -10.56028 -10.41243 -10.11039 -10.05777 -9.99158 -9.82849 -9.63792 -9.46428 -9.35882 -8.53996 -8.27449 -6.57635 -5.80243 -3.32149 0.14079 1.12288 1.35160 1.35392 3.00654 3.07154 3.35755 3.42676 3.43752 4.18901 4.46249 4.47033 4.86046 5.06625 5.20553 5.22463 5.25638 5.38271 5.42072 5.53202 5.62519 5.75409 5.90130 6.00473 6.07075 6.11619 6.17245 6.22404 6.33888 6.39834 6.47710 6.54441 6.64197 6.83205 6.84866 6.91827 6.97618 7.36550 7.51551 7.70964 7.78232 8.09716 8.50234 9.21933 9.83266 10.42619 11.27978 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.003287 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.530161 B = 8515.068113 C = 8739.871001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.585 5.585 10 C 0.173 3.827 11 C -0.148 4.148 12 C 0.154 3.846 13 H 0.097 0.903 14 C -0.109 4.109 15 H 0.059 0.941 16 C -0.108 4.108 17 C -0.132 4.132 18 C 0.083 3.917 19 N -0.580 5.580 20 C 0.595 3.405 21 O -0.529 6.529 22 C 0.023 3.977 23 C 0.088 3.912 24 N -0.574 5.574 25 S 0.686 5.314 26 N -0.534 5.534 27 C 0.155 3.845 28 H 0.255 0.745 29 H 0.092 0.908 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.126 0.874 39 H 0.214 0.786 40 H 0.017 0.983 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.681 -17.356 -10.418 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.307 5.307 10 C 0.046 3.954 11 C -0.188 4.188 12 C 0.053 3.947 13 H 0.115 0.885 14 C -0.130 4.130 15 H 0.078 0.922 16 C -0.146 4.146 17 C -0.170 4.170 18 C -0.042 4.042 19 N -0.311 5.311 20 C 0.377 3.623 21 O -0.406 6.406 22 C -0.152 4.152 23 C -0.105 4.105 24 N -0.415 5.415 25 S 0.731 5.269 26 N -0.383 5.383 27 C 0.027 3.973 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.143 0.857 39 H 0.231 0.769 40 H 0.035 0.965 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.025 -17.809 -11.796 21.737 hybrid contribution -0.377 1.273 1.482 1.989 sum 3.648 -16.536 -10.314 19.828 Atomic orbital electron populations 1.69937 1.05286 1.25530 1.53930 1.25262 0.95437 0.98378 0.99961 0.86277 0.79078 0.83627 0.77647 1.21434 1.21657 1.20397 1.19108 0.90086 0.83261 1.45895 0.91885 1.43517 1.29297 1.05842 1.52033 1.20786 0.88280 0.95586 0.90743 1.22622 1.00258 0.95770 1.00137 1.21552 0.98523 0.85380 0.89293 0.88484 1.21880 0.94079 0.99769 0.97307 0.92241 1.21493 0.97911 0.97845 0.97303 1.21949 0.96790 0.99356 0.98942 1.22603 0.84935 1.04934 0.91728 1.48405 1.28158 1.19944 1.34563 1.16872 0.82215 0.80347 0.82890 1.90823 1.36062 1.75215 1.38490 1.22758 0.97793 0.98547 0.96077 1.23804 1.00881 0.89967 0.95891 1.72263 1.20688 1.36637 1.11867 1.79215 1.25066 0.96410 1.26232 1.72918 1.24872 1.29867 1.10681 1.20485 0.98118 0.86744 0.91935 0.93526 0.89015 0.96116 0.91890 0.93277 0.90142 0.92337 0.91254 0.92508 0.91343 0.85721 0.76930 0.96480 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.01 55.49 0.61 -25.03 16 2 C 0.01 0.24 5.15 -17.43 -0.09 0.15 16 3 Si 0.90 21.23 29.56 -169.99 -5.02 16.20 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.25 -6.69 9.56 -15.06 -0.14 -6.83 16 8 H 0.06 1.64 7.83 -52.49 -0.41 1.22 16 9 N -0.59 -14.05 2.60 -174.01 -0.45 -14.50 16 10 C 0.17 4.03 5.23 -3.74 -0.02 4.01 16 11 C -0.15 -2.82 5.02 -26.60 -0.13 -2.96 16 12 C 0.15 2.72 2.65 -67.34 -0.18 2.54 16 13 H 0.10 1.89 7.06 -51.93 -0.37 1.53 16 14 C -0.11 -1.88 2.50 -90.74 -0.23 -2.11 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.11 -1.70 4.87 -26.75 -0.13 -1.83 16 17 C -0.13 -1.69 6.08 -26.60 -0.16 -1.85 16 18 C 0.08 1.10 5.58 -3.73 -0.02 1.08 16 19 N -0.58 -8.95 2.66 -166.02 -0.44 -9.39 16 20 C 0.60 9.17 7.69 -12.37 -0.10 9.07 16 21 O -0.53 -9.47 16.28 5.30 0.09 -9.39 16 22 C 0.02 0.29 6.59 -83.71 -0.55 -0.27 16 23 C 0.09 0.94 11.23 -17.87 -0.20 0.74 16 24 N -0.57 -5.82 11.41 19.43 0.22 -5.59 16 25 S 0.69 5.52 23.69 -107.50 -2.55 2.98 16 26 N -0.53 -5.79 7.70 23.18 0.18 -5.61 16 27 C 0.16 3.19 5.77 -4.88 -0.03 3.16 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 1.20 5.32 -51.93 -0.28 0.92 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.45 6.15 -51.93 -0.32 1.13 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.94 7.25 -51.93 -0.38 0.56 16 38 H 0.13 1.50 4.06 -70.01 -0.28 1.22 16 39 H 0.21 1.93 8.06 -52.49 -0.42 1.50 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.14 7.90 -51.93 -0.41 0.73 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -29.89 329.27 -9.67 -39.56 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.28 Total: 0.92 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -1.98 Total: 4.89 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.12 Total: -60.13 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 5.52 SS G_CDS: -2.55 Total: 2.98 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.89 -9.67 -39.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021525748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.951 kcal (2) G-P(sol) polarization free energy of solvation -29.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds