Wall clock time and date at job start Fri Apr 10 2020 14:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99902 * 2 1 4 4 H 1.48506 * 109.46734 * 269.99575 * 3 2 1 5 5 H 1.48495 * 109.47515 * 29.99416 * 3 2 1 6 6 H 1.48503 * 109.47110 * 149.99714 * 3 2 1 7 7 C 1.38810 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 185.50729 * 7 2 1 9 9 N 1.36936 * 120.00105 * 5.51168 * 7 2 1 10 10 C 1.46965 * 120.76925 * 34.69415 * 9 7 2 11 11 C 1.53096 * 108.61797 * 125.69115 * 10 9 7 12 12 C 1.53159 * 109.58176 * 55.34271 * 11 10 9 13 13 H 1.09001 * 110.65322 * 60.96737 * 12 11 10 14 14 C 1.53143 * 109.58930 * 299.42229 * 12 11 10 15 15 H 1.08999 * 109.24943 * 178.79620 * 14 12 11 16 16 C 1.52851 * 109.36508 * 298.32576 * 14 12 11 17 17 C 1.53118 * 109.34454 * 297.97533 * 16 14 12 18 18 C 1.53140 * 109.48058 * 60.64689 * 17 16 14 19 19 N 1.46948 * 109.02776 * 305.93738 * 18 17 16 20 20 C 1.34783 * 120.84028 * 233.98780 * 19 18 17 21 21 O 1.21570 * 119.99632 * 173.33100 * 20 19 18 22 22 C 1.47751 * 120.00425 * 353.33208 * 20 19 18 23 23 C 1.39344 * 124.11759 * 172.50161 * 22 20 19 24 24 N 1.30097 * 112.14336 * 179.82257 * 23 22 20 25 25 S 1.55918 * 108.75512 * 0.42533 * 24 23 22 26 26 N 1.31496 * 124.11006 * 352.80057 * 22 20 19 27 27 C 1.45156 * 121.16051 * 214.67394 * 9 7 2 28 28 H 0.96998 * 119.99924 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.61816 * 5.94353 * 10 9 7 30 30 H 1.09002 * 109.75507 * 245.51024 * 10 9 7 31 31 H 1.09001 * 109.45096 * 295.31097 * 11 10 9 32 32 H 1.09001 * 109.45814 * 175.38370 * 11 10 9 33 33 H 1.09000 * 109.49649 * 57.93150 * 16 14 12 34 34 H 1.09000 * 109.49969 * 178.01168 * 16 14 12 35 35 H 1.09000 * 109.47402 * 180.65205 * 17 16 14 36 36 H 1.09003 * 109.46911 * 300.64617 * 17 16 14 37 37 H 1.09002 * 109.54530 * 65.79452 * 18 17 16 38 38 H 1.09000 * 109.55081 * 186.07103 * 18 17 16 39 39 H 1.08002 * 123.92838 * 359.97438 * 23 22 20 40 40 H 1.09000 * 108.96845 * 113.61584 * 27 9 7 41 41 H 1.08995 * 109.13343 * 354.01844 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0865 -1.2042 0.0903 9 7 1.3303 -2.3854 -0.1128 10 6 0.1197 -2.4805 -0.9406 11 6 0.3032 -3.6207 -1.9457 12 6 0.6389 -4.9147 -1.1982 13 1 -0.1702 -5.1886 -0.5211 14 6 1.9411 -4.7313 -0.4135 15 1 2.1634 -5.6478 0.1331 16 6 3.0820 -4.4357 -1.3868 17 6 3.2647 -5.6271 -2.3310 18 6 1.9756 -5.8503 -3.1270 19 7 0.8511 -5.9826 -2.1904 20 6 0.0343 -7.0537 -2.2382 21 8 -0.8151 -7.2090 -1.3824 22 6 0.1713 -8.0391 -3.3306 23 6 -0.5198 -9.2479 -3.3840 24 7 -0.2260 -9.9341 -4.4495 25 16 0.8216 -9.1376 -5.2856 26 7 0.9644 -7.8845 -4.3680 27 6 1.7812 -3.5799 0.5777 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0329 -1.5428 -1.4749 30 1 -0.7439 -2.6858 -0.3081 31 1 1.1160 -3.3749 -2.6290 32 1 -0.6180 -3.7572 -2.5121 33 1 2.8431 -3.5447 -1.9675 34 1 4.0031 -4.2698 -0.8280 35 1 4.0855 -5.4232 -3.0186 36 1 3.4917 -6.5204 -1.7491 37 1 1.8025 -5.0000 -3.7867 38 1 2.0657 -6.7607 -3.7195 39 1 -1.2199 -9.5758 -2.6298 40 1 1.0452 -3.8506 1.3347 41 1 2.7389 -3.3758 1.0564 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021525748.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:41 Heat of formation + Delta-G solvation = 42.952072 kcal Electronic energy + Delta-G solvation = -25999.554019 eV Core-core repulsion = 22427.827405 eV Total energy + Delta-G solvation = -3571.726613 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.43867 -41.12106 -39.29631 -37.22487 -35.09544 -34.07786 -33.78248 -31.83745 -31.26260 -28.69428 -27.30542 -26.33203 -24.62621 -23.63767 -23.31213 -22.72368 -20.84741 -20.48251 -19.46832 -18.49839 -18.00637 -17.45526 -17.12201 -16.92407 -16.30675 -16.11303 -15.85106 -15.49624 -15.13793 -15.05022 -14.70082 -14.27672 -14.16934 -13.88712 -13.59560 -13.27140 -13.04538 -12.92495 -12.70410 -12.55750 -12.42739 -12.35858 -12.26261 -12.16357 -11.93381 -11.76416 -11.55252 -11.43887 -11.34195 -11.09894 -10.62485 -10.54591 -10.23721 -9.58886 -8.56387 -7.85316 -5.40325 -0.69653 0.32696 0.45381 0.63012 1.48948 1.49580 1.58687 1.86292 1.96290 2.51841 3.25786 3.32648 3.49541 3.69294 3.81362 3.94457 4.00750 4.03071 4.15140 4.26153 4.40245 4.47646 4.50291 4.61620 4.76391 4.84177 4.87755 4.93430 4.98961 5.08065 5.10059 5.13095 5.23097 5.33414 5.37070 5.43499 5.58172 5.63445 5.67190 5.74518 6.34339 6.46238 6.91385 7.18075 7.86510 8.42372 9.21217 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.003287 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.530161 B = 8515.068113 C = 8739.871001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.046 4.046 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.598 5.598 10 C 0.182 3.818 11 C -0.130 4.130 12 C 0.161 3.839 13 H 0.074 0.926 14 C -0.099 4.099 15 H 0.074 0.926 16 C -0.102 4.102 17 C -0.123 4.123 18 C 0.082 3.918 19 N -0.583 5.583 20 C 0.594 3.406 21 O -0.564 6.564 22 C 0.002 3.998 23 C 0.089 3.911 24 N -0.594 5.594 25 S 0.790 5.210 26 N -0.552 5.552 27 C 0.153 3.847 28 H 0.249 0.751 29 H 0.060 0.940 30 H -0.008 1.008 31 H 0.068 0.932 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.221 0.779 40 H 0.003 0.997 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -19.330 -12.489 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.241 4.241 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.320 5.320 10 C 0.056 3.944 11 C -0.169 4.169 12 C 0.059 3.941 13 H 0.092 0.908 14 C -0.120 4.120 15 H 0.092 0.908 16 C -0.140 4.140 17 C -0.161 4.161 18 C -0.042 4.042 19 N -0.313 5.313 20 C 0.378 3.622 21 O -0.443 6.443 22 C -0.170 4.170 23 C -0.102 4.102 24 N -0.436 5.436 25 S 0.833 5.167 26 N -0.404 5.404 27 C 0.026 3.974 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.010 0.990 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.162 0.838 39 H 0.237 0.763 40 H 0.021 0.979 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.205 -19.814 -13.858 24.963 hybrid contribution -1.029 1.762 1.998 2.856 sum 5.176 -18.052 -11.860 22.211 Atomic orbital electron populations 1.70121 1.06772 1.25786 1.55553 1.26010 0.96153 1.01585 1.00371 0.85251 0.78050 0.79441 0.77561 1.21048 1.22418 1.19179 1.19439 0.90529 0.84186 1.44686 0.91375 1.43680 1.29127 1.06428 1.52797 1.20493 0.87405 0.95715 0.90808 1.22331 1.00593 0.95066 0.98951 1.21162 0.98060 0.85452 0.89476 0.90787 1.21724 0.94645 0.98606 0.96989 0.90819 1.21414 0.97100 0.98307 0.97189 1.21906 0.97338 0.98105 0.98733 1.22803 0.84179 1.05829 0.91385 1.48326 1.29086 1.19435 1.34407 1.17211 0.81269 0.80524 0.83213 1.90798 1.37252 1.76129 1.40096 1.22150 1.00032 0.98691 0.96146 1.23773 1.00771 0.89417 0.96239 1.72160 1.21933 1.37411 1.12142 1.78871 1.21676 0.93180 1.22923 1.72498 1.25101 1.31967 1.10849 1.20587 0.97597 0.86691 0.92483 0.94133 0.92152 0.98986 0.91326 0.93008 0.92555 0.91750 0.88663 0.91534 0.91800 0.83848 0.76265 0.97899 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.25 11.01 21.65 0.24 -55.02 16 2 C -0.05 -2.51 5.15 84.86 0.44 -2.08 16 3 Si 0.97 44.24 29.56 68.60 2.03 46.27 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.26 -13.83 9.56 84.03 0.80 -13.03 16 8 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 9 N -0.60 -29.60 2.60 -704.45 -1.83 -31.43 16 10 C 0.18 8.96 5.23 86.32 0.45 9.41 16 11 C -0.13 -5.08 5.02 30.68 0.15 -4.92 16 12 C 0.16 5.77 2.65 44.94 0.12 5.89 16 13 H 0.07 3.01 7.06 -2.39 -0.02 2.99 16 14 C -0.10 -3.36 2.50 -10.87 -0.03 -3.39 16 15 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 16 C -0.10 -3.06 4.87 30.58 0.15 -2.91 16 17 C -0.12 -2.77 6.08 30.68 0.19 -2.58 16 18 C 0.08 1.97 5.58 86.34 0.48 2.45 16 19 N -0.58 -17.47 2.66 -797.45 -2.12 -19.59 16 20 C 0.59 17.95 7.69 86.76 0.67 18.61 16 21 O -0.56 -20.48 16.28 -3.94 -0.06 -20.54 16 22 C 0.00 0.04 6.59 41.98 0.28 0.31 16 23 C 0.09 1.73 11.23 85.22 0.96 2.69 16 24 N -0.59 -10.28 11.41 -92.45 -1.05 -11.33 16 25 S 0.79 9.66 23.69 -56.49 -1.34 8.32 16 26 N -0.55 -10.25 7.70 -80.59 -0.62 -10.87 16 27 C 0.15 6.42 5.77 86.55 0.50 6.92 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.06 3.34 6.18 -2.39 -0.01 3.32 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.07 2.62 5.32 -2.39 -0.01 2.61 16 32 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.97 6.15 -2.39 -0.01 1.96 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.61 7.25 -2.39 -0.02 1.60 16 38 H 0.15 2.99 4.06 -38.08 -0.15 2.84 16 39 H 0.22 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 41 H 0.06 2.45 7.90 -2.39 -0.02 2.43 16 Total: -1.00 -66.73 329.27 1.31 -65.42 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.92 Total: 11.40 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.15 Total: 17.37 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -5.39 Total: -128.24 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.06 Total: -20.54 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 9.66 SS G_CDS: -1.34 Total: 8.32 kcal Total: -66.73 1.31 -65.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021525748.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.370 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds