Wall clock time and date at job start Fri Apr 10 2020 14:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47298 * 239.99734 * 3 2 1 5 5 H 1.48501 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47405 * 119.99268 * 3 2 1 7 7 C 1.38809 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00252 * 176.01517 * 7 2 1 9 9 N 1.36943 * 119.99867 * 356.01967 * 7 2 1 10 10 C 1.46942 * 120.52373 * 35.46518 * 9 7 2 11 11 C 1.53311 * 109.12037 * 127.34897 * 10 9 7 12 12 C 1.52887 * 108.95054 * 54.11523 * 11 10 9 13 13 H 1.08995 * 109.70381 * 57.91132 * 12 11 10 14 14 C 1.53276 * 109.16657 * 297.88693 * 12 11 10 15 15 H 1.09000 * 109.47491 * 303.53003 * 14 12 11 16 16 C 1.52816 * 109.17003 * 183.71245 * 14 12 11 17 17 C 1.53149 * 109.26340 * 61.81533 * 16 14 12 18 18 C 1.53125 * 109.62049 * 299.15609 * 17 16 14 19 19 N 1.46711 * 110.29994 * 178.64739 * 12 11 10 20 20 C 1.34779 * 120.84204 * 353.93357 * 19 12 11 21 21 O 1.21566 * 119.99819 * 354.88795 * 20 19 12 22 22 C 1.47754 * 120.00136 * 174.88002 * 20 19 12 23 23 C 1.39355 * 124.11570 * 186.84414 * 22 20 19 24 24 N 1.30090 * 112.14316 * 179.97438 * 23 22 20 25 25 S 1.55913 * 108.75609 * 0.02562 * 24 23 22 26 26 N 1.31483 * 124.11534 * 6.55294 * 22 20 19 27 27 C 1.47068 * 120.46807 * 215.44760 * 9 7 2 28 28 H 0.97005 * 120.00298 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.51474 * 7.46140 * 10 9 7 30 30 H 1.09002 * 109.59002 * 247.28399 * 10 9 7 31 31 H 1.09006 * 109.55823 * 294.27367 * 11 10 9 32 32 H 1.09001 * 109.55948 * 173.95867 * 11 10 9 33 33 H 1.09000 * 109.51002 * 181.75490 * 16 14 12 34 34 H 1.09006 * 109.50551 * 301.83989 * 16 14 12 35 35 H 1.08994 * 109.44835 * 59.20424 * 17 16 14 36 36 H 1.08999 * 109.44574 * 179.11394 * 17 16 14 37 37 H 1.09002 * 109.54082 * 173.85877 * 18 17 16 38 38 H 1.08993 * 109.54759 * 294.12304 * 18 17 16 39 39 H 1.08001 * 123.92593 * 359.94932 * 23 22 20 40 40 H 1.09009 * 109.68566 * 113.59078 * 27 9 7 41 41 H 1.08995 * 109.68976 * 353.05210 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0883 -1.2033 -0.0645 9 7 1.3280 -2.3866 0.0834 10 6 0.0203 -2.5418 -0.5685 11 6 0.0478 -3.7900 -1.4584 12 6 0.4885 -4.9890 -0.6184 13 1 -0.1915 -5.1176 0.2237 14 6 1.9088 -4.7434 -0.0970 15 1 2.5769 -4.5551 -0.9374 16 6 2.3845 -5.9798 0.6647 17 6 2.4248 -7.1768 -0.2897 18 6 1.0205 -7.4448 -0.8381 19 7 0.4942 -6.2079 -1.4348 20 6 0.0284 -6.1946 -2.6995 21 8 -0.4885 -5.1892 -3.1463 22 6 0.1462 -7.4021 -3.5429 23 6 -0.1787 -7.4441 -4.8974 24 7 0.0139 -8.6235 -5.4115 25 16 0.5480 -9.5748 -4.2977 26 7 0.5756 -8.5663 -3.1081 27 6 1.8939 -3.5227 0.8263 28 1 -0.4851 0.8401 -0.0004 29 1 -0.1887 -1.6634 -1.1792 30 1 -0.7552 -2.6517 0.1895 31 1 0.7519 -3.6392 -2.2768 32 1 -0.9484 -3.9730 -1.8612 33 1 3.3823 -5.7994 1.0647 34 1 1.6966 -6.1897 1.4838 35 1 3.1016 -6.9595 -1.1160 36 1 2.7789 -8.0571 0.2469 37 1 1.0685 -8.2246 -1.5982 38 1 0.3670 -7.7647 -0.0265 39 1 -0.5478 -6.5962 -5.4553 40 1 1.2790 -3.7319 1.7017 41 1 2.9108 -3.2867 1.1396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021525754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:48 Heat of formation + Delta-G solvation = 78.218101 kcal Electronic energy + Delta-G solvation = -26015.009979 eV Core-core repulsion = 22444.812615 eV Total energy + Delta-G solvation = -3570.197364 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48853 -39.88315 -37.61201 -35.86846 -34.05675 -32.79777 -32.37154 -30.04655 -29.41471 -27.59774 -25.47515 -25.02168 -23.06714 -22.48149 -22.01437 -20.35761 -19.87408 -19.27216 -19.18523 -16.81932 -16.62612 -16.25729 -15.77058 -15.51576 -14.88397 -14.72151 -14.36420 -14.18446 -13.85393 -13.50118 -13.15761 -12.80242 -12.57002 -12.53392 -12.27196 -12.11231 -11.69112 -11.48376 -11.40320 -11.21389 -11.06345 -10.86642 -10.82390 -10.61990 -10.30537 -10.24818 -9.99214 -9.89231 -9.82203 -9.40378 -9.32364 -8.79624 -8.38230 -8.27374 -6.47896 -5.71864 -3.25377 0.15482 1.13814 1.36522 1.40094 3.01329 3.17375 3.41706 3.46632 3.47396 4.21409 4.48032 4.51811 4.87348 5.01889 5.07593 5.18884 5.27766 5.33100 5.47077 5.51953 5.65969 5.77034 5.88610 5.95219 6.05924 6.09832 6.15713 6.25574 6.28984 6.42874 6.45065 6.58096 6.75171 6.81605 6.96397 7.03120 7.20545 7.54415 7.61615 7.82919 7.93338 8.23366 8.59744 9.31022 9.89740 10.48885 11.33582 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.003550 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.019151 B = 7885.278170 C = 8653.947033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.010 3.990 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.256 4.256 8 H 0.061 0.939 9 N -0.595 5.595 10 C 0.164 3.836 11 C -0.133 4.133 12 C 0.157 3.843 13 H 0.068 0.932 14 C -0.113 4.113 15 H 0.069 0.931 16 C -0.115 4.115 17 C -0.128 4.128 18 C 0.065 3.935 19 N -0.583 5.583 20 C 0.594 3.406 21 O -0.506 6.506 22 C 0.026 3.974 23 C 0.089 3.911 24 N -0.570 5.570 25 S 0.677 5.323 26 N -0.538 5.538 27 C 0.156 3.844 28 H 0.255 0.745 29 H 0.101 0.899 30 H 0.013 0.987 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.146 0.854 38 H 0.062 0.938 39 H 0.216 0.784 40 H 0.018 0.982 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -21.417 -5.059 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.732 3.268 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.079 0.921 9 N -0.317 5.317 10 C 0.038 3.962 11 C -0.173 4.173 12 C 0.056 3.944 13 H 0.086 0.914 14 C -0.134 4.134 15 H 0.087 0.913 16 C -0.154 4.154 17 C -0.167 4.167 18 C -0.060 4.060 19 N -0.314 5.314 20 C 0.375 3.625 21 O -0.381 6.381 22 C -0.150 4.150 23 C -0.105 4.105 24 N -0.411 5.411 25 S 0.722 5.278 26 N -0.386 5.386 27 C 0.029 3.971 28 H 0.065 0.935 29 H 0.119 0.881 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.162 0.838 38 H 0.080 0.920 39 H 0.232 0.768 40 H 0.036 0.964 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.491 -22.767 -5.472 23.463 hybrid contribution 0.111 2.508 0.223 2.521 sum 1.602 -20.259 -5.249 20.989 Atomic orbital electron populations 1.69901 1.05316 1.25488 1.53969 1.25309 0.95518 0.98192 0.99821 0.86379 0.78937 0.83409 0.78060 1.20968 1.21582 1.20915 1.19093 0.90639 0.83258 1.45561 0.92090 1.44091 1.20169 1.09643 1.57831 1.21155 0.85966 0.95280 0.93796 1.22791 1.02186 0.94268 0.98031 1.21460 0.96945 0.83041 0.92960 0.91370 1.22092 0.95706 0.95829 0.99767 0.91268 1.21557 1.01388 0.94571 0.97854 1.21856 0.96757 0.98637 0.99404 1.22996 0.94306 0.88020 1.00714 1.48143 1.59640 1.11881 1.11753 1.16988 0.79766 0.84450 0.81324 1.90921 1.43797 1.30644 1.72764 1.23035 1.03556 0.93266 0.95106 1.23829 0.99255 0.95512 0.91886 1.72272 1.22174 1.09005 1.37671 1.79214 1.42418 1.21280 0.84890 1.72777 1.23039 1.08406 1.34366 1.20887 0.97540 0.86730 0.91964 0.93489 0.88131 0.96910 0.92287 0.90013 0.91862 0.92045 0.92112 0.91295 0.83840 0.91966 0.76810 0.96375 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 10.64 55.49 0.59 -25.82 16 2 C 0.01 0.29 5.31 -17.43 -0.09 0.20 16 3 Si 0.90 21.91 29.56 -169.99 -5.02 16.88 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -7.12 9.54 -15.06 -0.14 -7.26 16 8 H 0.06 1.67 7.83 -52.49 -0.41 1.25 16 9 N -0.59 -15.17 3.01 -172.19 -0.52 -15.68 16 10 C 0.16 4.09 5.22 -3.64 -0.02 4.07 16 11 C -0.13 -2.83 3.82 -26.63 -0.10 -2.93 16 12 C 0.16 2.82 2.64 -67.73 -0.18 2.64 16 13 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.11 -1.98 2.21 -90.54 -0.20 -2.18 16 15 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.12 -1.56 5.24 -26.75 -0.14 -1.70 16 17 C -0.13 -1.49 6.07 -26.59 -0.16 -1.66 16 18 C 0.07 0.80 6.30 -3.67 -0.02 0.78 16 19 N -0.58 -8.97 2.97 -166.47 -0.49 -9.47 16 20 C 0.59 9.32 7.58 -12.37 -0.09 9.23 16 21 O -0.51 -9.32 12.48 5.31 0.07 -9.25 16 22 C 0.03 0.32 6.65 -83.71 -0.56 -0.24 16 23 C 0.09 0.99 11.23 -17.87 -0.20 0.79 16 24 N -0.57 -5.95 11.41 19.42 0.22 -5.73 16 25 S 0.68 5.43 23.69 -107.50 -2.55 2.88 16 26 N -0.54 -5.69 7.57 23.17 0.18 -5.51 16 27 C 0.16 3.26 5.86 -3.70 -0.02 3.24 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.10 2.84 5.97 -51.93 -0.31 2.53 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 1.35 7.46 -51.93 -0.39 0.97 16 32 H 0.08 1.75 6.11 -51.93 -0.32 1.43 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.15 1.64 3.59 -88.07 -0.32 1.32 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.22 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -31.18 328.84 -10.02 -41.20 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.52 Total: 0.57 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -1.93 Total: 4.98 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.03 Total: -62.22 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.07 Total: -9.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 5.43 SS G_CDS: -2.55 Total: 2.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.18 -10.02 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021525754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.418 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds