Wall clock time and date at job start Fri Apr 10 2020 14:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48501 * 109.47298 * 239.99734 * 3 2 1 5 5 H 1.48501 * 109.46971 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47405 * 119.99268 * 3 2 1 7 7 C 1.38809 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00252 * 176.01517 * 7 2 1 9 9 N 1.36943 * 119.99867 * 356.01967 * 7 2 1 10 10 C 1.46942 * 120.52373 * 35.46518 * 9 7 2 11 11 C 1.53311 * 109.12037 * 127.34897 * 10 9 7 12 12 C 1.52887 * 108.95054 * 54.11523 * 11 10 9 13 13 H 1.08995 * 109.70381 * 57.91132 * 12 11 10 14 14 C 1.53276 * 109.16657 * 297.88693 * 12 11 10 15 15 H 1.09000 * 109.47491 * 303.53003 * 14 12 11 16 16 C 1.52816 * 109.17003 * 183.71245 * 14 12 11 17 17 C 1.53149 * 109.26340 * 61.81533 * 16 14 12 18 18 C 1.53125 * 109.62049 * 299.15609 * 17 16 14 19 19 N 1.46711 * 110.29994 * 178.64739 * 12 11 10 20 20 C 1.34779 * 120.84204 * 353.93357 * 19 12 11 21 21 O 1.21566 * 119.99819 * 354.88795 * 20 19 12 22 22 C 1.47754 * 120.00136 * 174.88002 * 20 19 12 23 23 C 1.39355 * 124.11570 * 186.84414 * 22 20 19 24 24 N 1.30090 * 112.14316 * 179.97438 * 23 22 20 25 25 S 1.55913 * 108.75609 * 0.02562 * 24 23 22 26 26 N 1.31483 * 124.11534 * 6.55294 * 22 20 19 27 27 C 1.47068 * 120.46807 * 215.44760 * 9 7 2 28 28 H 0.97005 * 120.00298 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.51474 * 7.46140 * 10 9 7 30 30 H 1.09002 * 109.59002 * 247.28399 * 10 9 7 31 31 H 1.09006 * 109.55823 * 294.27367 * 11 10 9 32 32 H 1.09001 * 109.55948 * 173.95867 * 11 10 9 33 33 H 1.09000 * 109.51002 * 181.75490 * 16 14 12 34 34 H 1.09006 * 109.50551 * 301.83989 * 16 14 12 35 35 H 1.08994 * 109.44835 * 59.20424 * 17 16 14 36 36 H 1.08999 * 109.44574 * 179.11394 * 17 16 14 37 37 H 1.09002 * 109.54082 * 173.85877 * 18 17 16 38 38 H 1.08993 * 109.54759 * 294.12304 * 18 17 16 39 39 H 1.08001 * 123.92593 * 359.94932 * 23 22 20 40 40 H 1.09009 * 109.68566 * 113.59078 * 27 9 7 41 41 H 1.08995 * 109.68976 * 353.05210 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0883 -1.2033 -0.0645 9 7 1.3280 -2.3866 0.0834 10 6 0.0203 -2.5418 -0.5685 11 6 0.0478 -3.7900 -1.4584 12 6 0.4885 -4.9890 -0.6184 13 1 -0.1915 -5.1176 0.2237 14 6 1.9088 -4.7434 -0.0970 15 1 2.5769 -4.5551 -0.9374 16 6 2.3845 -5.9798 0.6647 17 6 2.4248 -7.1768 -0.2897 18 6 1.0205 -7.4448 -0.8381 19 7 0.4942 -6.2079 -1.4348 20 6 0.0284 -6.1946 -2.6995 21 8 -0.4885 -5.1892 -3.1463 22 6 0.1462 -7.4021 -3.5429 23 6 -0.1787 -7.4441 -4.8974 24 7 0.0139 -8.6235 -5.4115 25 16 0.5480 -9.5748 -4.2977 26 7 0.5756 -8.5663 -3.1081 27 6 1.8939 -3.5227 0.8263 28 1 -0.4851 0.8401 -0.0004 29 1 -0.1887 -1.6634 -1.1792 30 1 -0.7552 -2.6517 0.1895 31 1 0.7519 -3.6392 -2.2768 32 1 -0.9484 -3.9730 -1.8612 33 1 3.3823 -5.7994 1.0647 34 1 1.6966 -6.1897 1.4838 35 1 3.1016 -6.9595 -1.1160 36 1 2.7789 -8.0571 0.2469 37 1 1.0685 -8.2246 -1.5982 38 1 0.3670 -7.7647 -0.0265 39 1 -0.5478 -6.5962 -5.4553 40 1 1.2790 -3.7319 1.7017 41 1 2.9108 -3.2867 1.1396 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021525754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:48 Heat of formation + Delta-G solvation = 57.901668 kcal Electronic energy + Delta-G solvation = -26015.890966 eV Core-core repulsion = 22444.812615 eV Total energy + Delta-G solvation = -3571.078350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.48132 -41.07472 -38.99324 -37.41533 -35.16971 -34.08725 -34.02294 -31.85753 -30.93428 -28.64864 -27.23677 -26.23448 -24.54564 -23.91943 -23.33682 -21.58505 -21.24665 -20.45796 -20.32788 -18.67175 -17.88991 -17.21786 -17.00401 -16.87232 -16.40629 -16.10550 -15.56323 -15.44491 -15.38366 -15.14083 -14.71342 -14.19399 -14.12276 -13.76036 -13.61817 -13.24886 -13.10446 -12.92386 -12.75456 -12.56841 -12.44766 -12.29452 -12.17622 -12.12687 -12.00803 -11.93906 -11.63152 -11.59211 -11.21333 -10.75262 -10.51984 -10.21723 -10.18191 -9.54930 -8.53970 -7.84660 -5.42279 -0.70068 0.32217 0.45850 0.62759 1.45931 1.48455 1.55195 1.87017 2.04470 2.49890 3.26763 3.30347 3.49221 3.65646 3.85193 3.93761 3.98417 4.02511 4.15629 4.31308 4.43485 4.47863 4.54846 4.64281 4.78028 4.87592 4.92161 4.94159 5.01041 5.12080 5.14113 5.27777 5.28459 5.32460 5.39779 5.51558 5.59533 5.65472 5.69767 5.82999 6.38530 6.46234 7.02016 7.18052 7.85686 8.39713 9.18457 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.022448 B = 0.003550 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.019151 B = 7885.278170 C = 8653.947033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.044 4.044 3 Si 0.970 3.030 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.271 4.271 8 H 0.063 0.937 9 N -0.615 5.615 10 C 0.174 3.826 11 C -0.111 4.111 12 C 0.164 3.836 13 H 0.069 0.931 14 C -0.100 4.100 15 H 0.048 0.952 16 C -0.109 4.109 17 C -0.121 4.121 18 C 0.061 3.939 19 N -0.585 5.585 20 C 0.588 3.412 21 O -0.548 6.548 22 C 0.004 3.996 23 C 0.085 3.915 24 N -0.593 5.593 25 S 0.789 5.211 26 N -0.548 5.548 27 C 0.154 3.846 28 H 0.250 0.750 29 H 0.061 0.939 30 H -0.006 1.006 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.160 0.840 38 H 0.075 0.925 39 H 0.217 0.783 40 H 0.022 0.978 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 -24.824 -4.902 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.240 4.240 3 Si 0.798 3.202 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.199 1.199 7 C -0.401 4.401 8 H 0.081 0.919 9 N -0.338 5.338 10 C 0.048 3.952 11 C -0.150 4.150 12 C 0.061 3.939 13 H 0.087 0.913 14 C -0.121 4.121 15 H 0.066 0.934 16 C -0.147 4.147 17 C -0.159 4.159 18 C -0.063 4.063 19 N -0.316 5.316 20 C 0.372 3.628 21 O -0.425 6.425 22 C -0.168 4.168 23 C -0.105 4.105 24 N -0.436 5.436 25 S 0.833 5.167 26 N -0.400 5.400 27 C 0.028 3.972 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.012 0.988 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.175 0.825 38 H 0.093 0.907 39 H 0.233 0.767 40 H 0.040 0.960 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.081 -26.199 -5.303 26.907 hybrid contribution -0.354 3.337 0.103 3.357 sum 2.727 -22.862 -5.200 23.604 Atomic orbital electron populations 1.70111 1.06759 1.25804 1.55180 1.26088 0.96334 1.01587 0.99998 0.85316 0.77583 0.78983 0.78363 1.20373 1.21845 1.19851 1.19440 0.90989 0.84489 1.45154 0.91888 1.44331 1.20076 1.10520 1.58884 1.20849 0.85743 0.95504 0.93126 1.22426 1.01442 0.94402 0.96736 1.21119 0.97126 0.83076 0.92549 0.91336 1.21877 0.95047 0.96430 0.98718 0.93370 1.21530 1.02101 0.93070 0.98025 1.21842 0.96200 0.98959 0.98935 1.23296 0.94782 0.86703 1.01525 1.48140 1.59847 1.11901 1.11705 1.17349 0.78852 0.85177 0.81458 1.90884 1.45485 1.32648 1.73530 1.22302 1.06670 0.92749 0.95075 1.23733 0.99297 0.95993 0.91487 1.72134 1.23128 1.09194 1.39168 1.78831 1.37899 1.17979 0.82000 1.72337 1.22940 1.08296 1.36403 1.21043 0.97250 0.86532 0.92390 0.94030 0.92108 0.98815 0.94603 0.90554 0.90614 0.90935 0.92850 0.87693 0.82463 0.90713 0.76685 0.96028 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.10 10.64 21.65 0.23 -56.87 16 2 C -0.04 -2.57 5.31 84.86 0.45 -2.12 16 3 Si 0.97 46.11 29.56 68.60 2.03 48.14 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.27 -15.52 9.54 84.03 0.80 -14.72 16 8 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 9 N -0.61 -32.60 3.01 -698.70 -2.10 -34.70 16 10 C 0.17 9.24 5.22 86.40 0.45 9.69 16 11 C -0.11 -4.97 3.82 30.66 0.12 -4.86 16 12 C 0.16 5.96 2.64 45.01 0.12 6.08 16 13 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 14 C -0.10 -3.47 2.21 -10.74 -0.02 -3.49 16 15 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.11 -2.67 5.24 30.58 0.16 -2.51 16 17 C -0.12 -2.39 6.07 30.69 0.19 -2.21 16 18 C 0.06 1.32 6.30 86.31 0.54 1.86 16 19 N -0.59 -17.65 2.97 -798.85 -2.37 -20.02 16 20 C 0.59 18.62 7.58 86.76 0.66 19.27 16 21 O -0.55 -21.16 12.48 -3.92 -0.05 -21.20 16 22 C 0.00 0.09 6.65 41.98 0.28 0.37 16 23 C 0.09 1.81 11.23 85.22 0.96 2.77 16 24 N -0.59 -10.90 11.41 -92.48 -1.06 -11.96 16 25 S 0.79 9.63 23.69 -56.49 -1.34 8.30 16 26 N -0.55 -9.96 7.57 -80.61 -0.61 -10.57 16 27 C 0.15 6.49 5.86 86.29 0.51 6.99 16 28 H 0.25 14.83 8.31 -92.70 -0.77 14.05 16 29 H 0.06 3.70 5.97 -2.39 -0.01 3.68 16 30 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.04 1.74 7.46 -2.38 -0.02 1.73 16 32 H 0.08 3.49 6.11 -2.39 -0.01 3.48 16 33 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.16 3.05 3.59 -73.74 -0.26 2.79 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.22 4.27 8.06 -2.91 -0.02 4.25 16 40 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 Total: -1.00 -71.54 328.84 0.73 -70.81 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.80 Total: 10.95 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: 5.20 Total: 17.13 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -5.91 Total: -134.12 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.05 Total: -21.20 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Atomic # 16 Polarization: 9.63 SS G_CDS: -1.34 Total: 8.30 kcal Total: -71.54 0.73 -70.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021525754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.711 kcal (2) G-P(sol) polarization free energy of solvation -71.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds