Wall clock time and date at job start Fri Apr 10 2020 14:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48505 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46705 * 299.99606 * 3 2 1 6 6 H 1.48492 * 109.47253 * 59.99954 * 3 2 1 7 7 C 1.38814 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00521 * 152.54140 * 7 2 1 9 9 N 1.36945 * 119.99715 * 332.53967 * 7 2 1 10 10 C 1.46969 * 120.77135 * 324.88102 * 9 7 2 11 11 C 1.53097 * 108.61578 * 234.31411 * 10 9 7 12 12 C 1.53174 * 109.57769 * 304.65267 * 11 10 9 13 13 H 1.08998 * 110.65306 * 299.02975 * 12 11 10 14 14 C 1.53142 * 109.58686 * 60.58574 * 12 11 10 15 15 H 1.08996 * 109.25306 * 181.20588 * 14 12 11 16 16 C 1.52853 * 109.36762 * 61.66469 * 14 12 11 17 17 C 1.53113 * 109.34700 * 62.02002 * 16 14 12 18 18 C 1.53146 * 109.47847 * 299.35502 * 17 16 14 19 19 N 1.46941 * 109.10253 * 54.02604 * 18 17 16 20 20 C 1.34771 * 120.84998 * 125.99969 * 19 18 17 21 21 O 1.21620 * 120.00536 * 175.56274 * 20 19 18 22 22 C 1.47173 * 119.99984 * 355.56540 * 20 19 18 23 23 C 1.38253 * 128.47506 * 220.64339 * 22 20 19 24 24 N 1.31243 * 111.88510 * 179.97438 * 23 22 20 25 25 N 1.27335 * 120.03716 * 0.02562 * 24 23 22 26 26 S 1.56629 * 109.74319 * 359.69470 * 25 24 23 27 27 C 1.45161 * 121.15733 * 144.89898 * 9 7 2 28 28 H 0.97007 * 119.99658 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.60972 * 114.57574 * 10 9 7 30 30 H 1.08999 * 109.61314 * 354.05274 * 10 9 7 31 31 H 1.09001 * 109.45421 * 184.61900 * 11 10 9 32 32 H 1.08999 * 109.43870 * 64.66976 * 11 10 9 33 33 H 1.08997 * 109.49484 * 302.05440 * 16 14 12 34 34 H 1.09006 * 109.50972 * 181.98645 * 16 14 12 35 35 H 1.08998 * 109.47534 * 179.35113 * 17 16 14 36 36 H 1.09003 * 109.47288 * 59.35325 * 17 16 14 37 37 H 1.09001 * 109.54527 * 173.93582 * 18 17 16 38 38 H 1.08997 * 109.54769 * 294.11583 * 18 17 16 39 39 H 1.07994 * 124.05653 * 0.02562 * 23 22 20 40 40 H 1.08997 * 108.47853 * 6.39118 * 27 9 7 41 41 H 1.09001 * 109.61893 * 246.79079 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 2.9989 -1.2551 -0.4307 9 7 1.4412 -2.3211 0.5479 10 6 0.5747 -2.2219 1.7309 11 6 1.1134 -3.1633 2.8115 12 6 1.2220 -4.5832 2.2475 13 1 0.2434 -4.9498 1.9378 14 6 2.1866 -4.5908 1.0580 15 1 2.2433 -5.5989 0.6477 16 6 3.5753 -4.1592 1.5287 17 6 4.0947 -5.1617 2.5628 18 6 3.1474 -5.1916 3.7658 19 7 1.7806 -5.4556 3.2951 20 6 1.0577 -6.4715 3.8067 21 8 -0.0991 -6.6271 3.4652 22 6 1.6681 -7.3925 4.7788 23 6 1.5315 -8.7655 4.8660 24 7 2.2244 -9.2638 5.8629 25 7 2.9118 -8.4942 6.6089 26 16 2.7646 -7.0135 6.1199 27 6 1.6744 -3.6366 -0.0196 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4416 -2.5131 1.4654 30 1 0.5792 -1.1974 2.1029 31 1 0.4350 -3.1625 3.6647 32 1 2.0985 -2.8232 3.1306 33 1 3.5148 -3.1690 1.9804 34 1 4.2554 -4.1297 0.6773 35 1 5.0898 -4.8622 2.8914 36 1 4.1436 -6.1540 2.1143 37 1 3.4551 -5.9798 4.4528 38 1 3.1774 -4.2296 4.2775 39 1 0.9277 -9.3571 4.1938 40 1 2.4202 -3.5449 -0.8092 41 1 0.7457 -4.0245 -0.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021533254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:37 Heat of formation + Delta-G solvation = 66.839848 kcal Electronic energy + Delta-G solvation = -25882.861402 eV Core-core repulsion = 22312.170640 eV Total energy + Delta-G solvation = -3570.690762 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.11550 -40.44872 -38.25167 -35.80811 -33.18321 -32.59998 -32.11076 -30.25221 -29.98665 -27.81749 -25.81706 -25.10985 -23.35468 -22.45366 -22.06331 -21.47375 -19.95369 -19.22808 -18.01827 -17.37922 -16.79864 -16.46119 -15.94259 -15.40285 -14.95071 -14.85725 -14.72677 -14.26203 -13.88257 -13.75787 -13.29991 -13.12595 -12.83300 -12.75628 -12.55639 -12.41223 -12.20374 -11.56710 -11.50117 -11.11471 -10.89518 -10.75556 -10.66612 -10.50132 -10.45836 -10.32912 -10.20307 -10.13039 -10.10967 -9.86945 -9.73360 -9.51977 -8.60860 -8.45210 -6.71542 -5.90685 -3.34202 -0.47184 0.46601 1.20616 1.76780 2.58240 2.84945 3.30891 3.41252 3.43056 3.74615 4.17839 4.43417 4.47835 4.60150 4.88031 4.96908 5.20733 5.22140 5.26480 5.30548 5.38241 5.49845 5.53690 5.77088 5.85851 5.91728 5.99878 6.18000 6.21144 6.32308 6.34464 6.48571 6.65894 6.73277 6.77875 6.84813 7.08799 7.21685 7.35787 7.38732 7.78752 7.88676 8.40306 9.09532 9.75362 10.37213 11.15317 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.027234 B = 0.003411 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.871602 B = 8206.513121 C = 8412.705009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.019 3.981 3 Si 0.889 3.111 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.269 4.269 8 H 0.063 0.937 9 N -0.580 5.580 10 C 0.173 3.827 11 C -0.148 4.148 12 C 0.157 3.843 13 H 0.100 0.900 14 C -0.110 4.110 15 H 0.061 0.939 16 C -0.108 4.108 17 C -0.132 4.132 18 C 0.099 3.901 19 N -0.592 5.592 20 C 0.595 3.405 21 O -0.517 6.517 22 C -0.275 4.275 23 C 0.061 3.939 24 N -0.249 5.249 25 N -0.274 5.274 26 S 0.431 5.569 27 C 0.154 3.846 28 H 0.254 0.746 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.213 0.787 40 H 0.058 0.942 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.262 -12.329 9.790 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.183 4.183 3 Si 0.718 3.282 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.399 4.399 8 H 0.081 0.919 9 N -0.302 5.302 10 C 0.047 3.953 11 C -0.188 4.188 12 C 0.056 3.944 13 H 0.118 0.882 14 C -0.131 4.131 15 H 0.079 0.921 16 C -0.145 4.145 17 C -0.171 4.171 18 C -0.025 4.025 19 N -0.324 5.324 20 C 0.379 3.621 21 O -0.394 6.394 22 C -0.416 4.416 23 C -0.105 4.105 24 N -0.114 5.114 25 N -0.254 5.254 26 S 0.566 5.434 27 C 0.026 3.974 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.229 0.771 40 H 0.076 0.924 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 7.709 -12.360 11.161 18.351 hybrid contribution -0.536 0.560 -1.038 1.296 sum 7.173 -11.800 10.123 17.122 Atomic orbital electron populations 1.70196 1.05652 1.25852 1.50418 1.25111 0.94789 0.98895 0.99515 0.86477 0.80048 0.84360 0.77365 1.20003 1.21709 1.21433 1.18973 0.97009 0.86675 1.37197 0.91927 1.43544 1.56618 1.01517 1.28509 1.20657 0.92409 0.97120 0.85165 1.22577 1.01759 0.94471 0.99949 1.21550 0.97786 0.89363 0.85663 0.88198 1.21911 0.94943 0.99864 0.96416 0.92058 1.21491 0.95712 0.99305 0.98008 1.21939 0.98200 1.00811 0.96105 1.22030 0.81780 1.01545 0.97128 1.48491 1.14778 1.29629 1.39534 1.16587 0.85488 0.79959 0.80061 1.90864 1.15623 1.72425 1.60446 1.28164 1.08316 0.99071 1.06029 1.24394 0.98608 0.91088 0.96381 1.70714 1.07107 1.29540 1.04063 1.78764 1.20824 1.02505 1.23353 1.82797 1.29893 1.16361 1.14374 1.20491 0.97685 0.86404 0.92782 0.93590 0.95699 0.91158 0.92877 0.91594 0.89857 0.91836 0.90681 0.91966 0.91832 0.89786 0.77054 0.92365 0.96411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.60 12.47 55.49 0.69 -23.90 16 2 C 0.02 0.49 4.58 -17.43 -0.08 0.41 16 3 Si 0.89 20.43 29.63 -169.99 -5.04 15.40 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.27 -6.86 9.39 -15.05 -0.14 -7.00 16 8 H 0.06 1.59 7.96 -52.49 -0.42 1.17 16 9 N -0.58 -13.18 2.56 -173.99 -0.45 -13.63 16 10 C 0.17 3.75 5.45 -3.74 -0.02 3.73 16 11 C -0.15 -2.51 5.02 -26.59 -0.13 -2.64 16 12 C 0.16 2.48 2.64 -67.31 -0.18 2.31 16 13 H 0.10 1.79 7.08 -51.93 -0.37 1.42 16 14 C -0.11 -1.71 2.51 -90.74 -0.23 -1.93 16 15 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.11 -1.48 4.86 -26.75 -0.13 -1.61 16 17 C -0.13 -1.39 6.08 -26.60 -0.16 -1.55 16 18 C 0.10 1.04 5.56 -3.73 -0.02 1.02 16 19 N -0.59 -7.85 2.66 -166.22 -0.44 -8.29 16 20 C 0.60 8.28 7.67 -12.64 -0.10 8.18 16 21 O -0.52 -8.96 16.58 5.26 0.09 -8.87 16 22 C -0.27 -3.09 5.95 -35.95 -0.21 -3.30 16 23 C 0.06 0.65 11.69 -17.80 -0.21 0.44 16 24 N -0.25 -2.95 11.54 30.36 0.35 -2.60 16 25 N -0.27 -3.14 12.51 60.35 0.75 -2.39 16 26 S 0.43 3.94 20.45 -107.50 -2.20 1.75 16 27 C 0.15 2.98 5.79 -4.88 -0.03 2.95 16 28 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.69 6.90 -51.93 -0.36 1.33 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 1.08 5.33 -51.93 -0.28 0.80 16 33 H 0.08 1.32 6.15 -51.93 -0.32 1.00 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.56 3.76 -28.42 -0.11 0.45 16 38 H 0.08 0.83 7.26 -51.93 -0.38 0.45 16 39 H 0.21 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.06 1.12 7.87 -51.93 -0.41 0.71 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -29.85 332.58 -8.02 -37.86 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.15 Total: -1.34 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.64 Total: 1.00 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.91 Total: -50.81 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.04 Total: 15.40 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.20 Total: 1.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.85 -8.02 -37.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021533254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.704 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds