Wall clock time and date at job start Fri Apr 10 2020 14:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48505 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.46705 * 299.99606 * 3 2 1 6 6 H 1.48492 * 109.47253 * 59.99954 * 3 2 1 7 7 C 1.38814 * 120.00068 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00521 * 152.54140 * 7 2 1 9 9 N 1.36945 * 119.99715 * 332.53967 * 7 2 1 10 10 C 1.46969 * 120.77135 * 324.88102 * 9 7 2 11 11 C 1.53097 * 108.61578 * 234.31411 * 10 9 7 12 12 C 1.53174 * 109.57769 * 304.65267 * 11 10 9 13 13 H 1.08998 * 110.65306 * 299.02975 * 12 11 10 14 14 C 1.53142 * 109.58686 * 60.58574 * 12 11 10 15 15 H 1.08996 * 109.25306 * 181.20588 * 14 12 11 16 16 C 1.52853 * 109.36762 * 61.66469 * 14 12 11 17 17 C 1.53113 * 109.34700 * 62.02002 * 16 14 12 18 18 C 1.53146 * 109.47847 * 299.35502 * 17 16 14 19 19 N 1.46941 * 109.10253 * 54.02604 * 18 17 16 20 20 C 1.34771 * 120.84998 * 125.99969 * 19 18 17 21 21 O 1.21620 * 120.00536 * 175.56274 * 20 19 18 22 22 C 1.47173 * 119.99984 * 355.56540 * 20 19 18 23 23 C 1.38253 * 128.47506 * 220.64339 * 22 20 19 24 24 N 1.31243 * 111.88510 * 179.97438 * 23 22 20 25 25 N 1.27335 * 120.03716 * 0.02562 * 24 23 22 26 26 S 1.56629 * 109.74319 * 359.69470 * 25 24 23 27 27 C 1.45161 * 121.15733 * 144.89898 * 9 7 2 28 28 H 0.97007 * 119.99658 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.60972 * 114.57574 * 10 9 7 30 30 H 1.08999 * 109.61314 * 354.05274 * 10 9 7 31 31 H 1.09001 * 109.45421 * 184.61900 * 11 10 9 32 32 H 1.08999 * 109.43870 * 64.66976 * 11 10 9 33 33 H 1.08997 * 109.49484 * 302.05440 * 16 14 12 34 34 H 1.09006 * 109.50972 * 181.98645 * 16 14 12 35 35 H 1.08998 * 109.47534 * 179.35113 * 17 16 14 36 36 H 1.09003 * 109.47288 * 59.35325 * 17 16 14 37 37 H 1.09001 * 109.54527 * 173.93582 * 18 17 16 38 38 H 1.08997 * 109.54769 * 294.11583 * 18 17 16 39 39 H 1.07994 * 124.05653 * 0.02562 * 23 22 20 40 40 H 1.08997 * 108.47853 * 6.39118 * 27 9 7 41 41 H 1.09001 * 109.61893 * 246.79079 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 2.9989 -1.2551 -0.4307 9 7 1.4412 -2.3211 0.5479 10 6 0.5747 -2.2219 1.7309 11 6 1.1134 -3.1633 2.8115 12 6 1.2220 -4.5832 2.2475 13 1 0.2434 -4.9498 1.9378 14 6 2.1866 -4.5908 1.0580 15 1 2.2433 -5.5989 0.6477 16 6 3.5753 -4.1592 1.5287 17 6 4.0947 -5.1617 2.5628 18 6 3.1474 -5.1916 3.7658 19 7 1.7806 -5.4556 3.2951 20 6 1.0577 -6.4715 3.8067 21 8 -0.0991 -6.6271 3.4652 22 6 1.6681 -7.3925 4.7788 23 6 1.5315 -8.7655 4.8660 24 7 2.2244 -9.2638 5.8629 25 7 2.9118 -8.4942 6.6089 26 16 2.7646 -7.0135 6.1199 27 6 1.6744 -3.6366 -0.0196 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4416 -2.5131 1.4654 30 1 0.5792 -1.1974 2.1029 31 1 0.4350 -3.1625 3.6647 32 1 2.0985 -2.8232 3.1306 33 1 3.5148 -3.1690 1.9804 34 1 4.2554 -4.1297 0.6773 35 1 5.0898 -4.8622 2.8914 36 1 4.1436 -6.1540 2.1143 37 1 3.4551 -5.9798 4.4528 38 1 3.1774 -4.2296 4.2775 39 1 0.9277 -9.3571 4.1938 40 1 2.4202 -3.5449 -0.8092 41 1 0.7457 -4.0245 -0.4381 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021533254.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:35 Heat of formation + Delta-G solvation = 48.377474 kcal Electronic energy + Delta-G solvation = -25883.661991 eV Core-core repulsion = 22312.170640 eV Total energy + Delta-G solvation = -3571.491350 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05148 -41.53227 -39.54222 -37.23260 -34.63395 -33.84408 -33.23811 -31.82941 -31.37854 -28.78192 -27.33495 -26.39411 -24.64930 -23.70565 -23.34037 -22.82471 -20.93140 -20.20754 -19.43021 -18.59132 -18.18751 -17.62636 -16.89297 -16.85170 -16.23517 -16.05077 -15.92797 -15.64411 -15.16286 -15.11256 -14.78533 -14.33389 -14.19098 -13.92214 -13.74421 -13.63455 -13.24641 -13.02832 -12.93789 -12.67459 -12.41376 -12.32653 -12.14313 -11.94047 -11.79244 -11.51269 -11.49078 -11.32748 -11.22866 -11.11629 -10.97956 -10.58904 -10.48940 -9.72370 -8.63530 -7.88621 -5.35574 -1.31810 -0.34555 0.39748 0.91691 1.47064 1.52098 1.53724 1.61814 1.80209 2.53333 2.91507 3.22439 3.26593 3.63195 3.68125 3.74509 3.83036 3.93251 4.01423 4.20210 4.33761 4.41852 4.46305 4.54220 4.59511 4.78645 4.83555 4.85304 4.93930 5.00606 5.08317 5.12883 5.24270 5.30615 5.37320 5.42864 5.52920 5.68550 5.74875 6.18112 6.43834 6.55858 6.80990 7.14838 7.85689 8.44313 9.15170 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.027234 B = 0.003411 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.871602 B = 8206.513121 C = 8412.705009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.034 4.034 3 Si 0.953 3.047 4 H -0.261 1.261 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.268 4.268 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.181 3.819 11 C -0.130 4.130 12 C 0.165 3.835 13 H 0.074 0.926 14 C -0.099 4.099 15 H 0.075 0.925 16 C -0.103 4.103 17 C -0.124 4.124 18 C 0.094 3.906 19 N -0.589 5.589 20 C 0.600 3.400 21 O -0.559 6.559 22 C -0.300 4.300 23 C 0.071 3.929 24 N -0.271 5.271 25 N -0.296 5.296 26 S 0.509 5.491 27 C 0.152 3.848 28 H 0.250 0.750 29 H -0.006 1.006 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.229 0.771 40 H 0.057 0.943 41 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.071 -13.266 11.388 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.232 4.232 3 Si 0.781 3.219 4 H -0.185 1.185 5 H -0.224 1.224 6 H -0.217 1.217 7 C -0.398 4.398 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.054 3.946 11 C -0.170 4.170 12 C 0.063 3.937 13 H 0.092 0.908 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.141 4.141 17 C -0.162 4.162 18 C -0.029 4.029 19 N -0.320 5.320 20 C 0.385 3.615 21 O -0.438 6.438 22 C -0.441 4.441 23 C -0.095 4.095 24 N -0.134 5.134 25 N -0.277 5.277 26 S 0.645 5.355 27 C 0.025 3.975 28 H 0.059 0.941 29 H 0.012 0.988 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.245 0.755 40 H 0.076 0.924 41 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 10.577 -13.329 12.784 21.283 hybrid contribution -1.410 0.833 -1.544 2.251 sum 9.167 -12.496 11.240 19.145 Atomic orbital electron populations 1.70314 1.07211 1.26159 1.52858 1.25836 0.95375 1.01865 1.00095 0.85459 0.79440 0.80370 0.76613 1.18508 1.22408 1.21717 1.19285 0.96941 0.87566 1.36007 0.91668 1.43727 1.56492 1.02159 1.29090 1.20437 0.91204 0.96645 0.86281 1.22316 1.02259 0.94158 0.98268 1.21157 0.97033 0.88931 0.86619 0.90759 1.21731 0.96014 0.99249 0.94958 0.90673 1.21419 0.94279 0.99303 0.99077 1.21904 0.99305 1.00120 0.94863 1.22306 0.79945 1.02949 0.97691 1.48371 1.15879 1.29056 1.38739 1.16789 0.84893 0.79902 0.79905 1.90848 1.17561 1.73479 1.61961 1.27865 1.10232 0.98960 1.07013 1.24681 0.97832 0.91095 0.95933 1.70787 1.07949 1.30053 1.04612 1.78573 1.21242 1.03954 1.23897 1.82463 1.27183 1.14129 1.11762 1.20587 0.96955 0.85738 0.94222 0.94097 0.98772 0.94005 0.92147 0.90108 0.91742 0.91556 0.87702 0.91164 0.89841 0.88511 0.75519 0.92418 0.98305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 12.47 21.65 0.27 -53.13 16 2 C -0.03 -1.80 4.58 84.86 0.39 -1.42 16 3 Si 0.95 42.54 29.63 68.60 2.03 44.58 16 4 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.27 -13.79 9.39 84.03 0.79 -13.00 16 8 H 0.07 3.28 7.96 -2.91 -0.02 3.25 16 9 N -0.59 -27.53 2.56 -704.40 -1.80 -29.33 16 10 C 0.18 8.14 5.45 86.32 0.47 8.61 16 11 C -0.13 -4.39 5.02 30.68 0.15 -4.23 16 12 C 0.16 5.13 2.64 44.94 0.12 5.24 16 13 H 0.07 2.73 7.08 -2.39 -0.02 2.71 16 14 C -0.10 -2.95 2.51 -10.87 -0.03 -2.98 16 15 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.10 -2.57 4.86 30.58 0.15 -2.42 16 17 C -0.12 -2.07 6.08 30.68 0.19 -1.89 16 18 C 0.09 1.60 5.56 86.34 0.48 2.08 16 19 N -0.59 -14.40 2.66 -798.04 -2.12 -16.53 16 20 C 0.60 15.74 7.67 86.59 0.66 16.41 16 21 O -0.56 -19.29 16.58 -4.10 -0.07 -19.36 16 22 C -0.30 -6.01 5.95 24.62 0.15 -5.86 16 23 C 0.07 1.36 11.69 84.78 0.99 2.35 16 24 N -0.27 -5.80 11.54 -57.86 -0.67 -6.47 16 25 N -0.30 -5.96 12.51 37.02 0.46 -5.49 16 26 S 0.51 7.55 20.45 -56.49 -1.16 6.40 16 27 C 0.15 5.96 5.79 86.56 0.50 6.46 16 28 H 0.25 14.02 8.31 -92.70 -0.77 13.25 16 29 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 30 H 0.04 2.09 6.90 -2.39 -0.02 2.07 16 31 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 2.50 5.33 -2.39 -0.01 2.49 16 33 H 0.06 1.88 6.15 -2.39 -0.01 1.87 16 34 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 1.08 3.76 -17.34 -0.07 1.02 16 38 H 0.10 1.48 7.26 -2.39 -0.02 1.46 16 39 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.06 2.23 7.87 -2.39 -0.02 2.21 16 41 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: -1.00 -66.97 332.58 2.97 -64.01 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.01 Total: 5.96 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: 5.01 Total: 9.36 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -3.86 Total: -110.94 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.07 Total: -19.36 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 7.55 SS G_CDS: -1.16 Total: 6.40 kcal Total: -66.97 2.97 -64.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021533254.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.385 kcal (2) G-P(sol) polarization free energy of solvation -66.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds