Wall clock time and date at job start Fri Apr 10 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99804 * 2 1 4 4 H 1.48499 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47216 * 300.00483 * 3 2 1 6 6 H 1.48498 * 109.46993 * 60.00637 * 3 2 1 7 7 C 1.38813 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00037 * 163.60753 * 7 2 1 9 9 N 1.36939 * 119.99933 * 343.60799 * 7 2 1 10 10 C 1.46967 * 120.76713 * 152.75595 * 9 7 2 11 11 C 1.53099 * 108.62290 * 125.68061 * 10 9 7 12 12 C 1.53159 * 109.57821 * 55.33885 * 11 10 9 13 13 H 1.08999 * 110.06772 * 61.32664 * 12 11 10 14 14 C 1.53157 * 109.57820 * 300.15564 * 12 11 10 15 15 H 1.08996 * 109.25289 * 178.88240 * 14 12 11 16 16 C 1.52853 * 109.35306 * 297.62858 * 14 12 11 17 17 C 1.53119 * 109.34442 * 297.96010 * 16 14 12 18 18 C 1.53145 * 109.47923 * 60.64989 * 17 16 14 19 19 N 1.47103 * 109.62578 * 306.36403 * 18 17 16 20 20 C 1.34772 * 120.94111 * 233.61621 * 19 18 17 21 21 O 1.21627 * 119.99946 * 185.07562 * 20 19 18 22 22 C 1.47166 * 120.00065 * 5.07028 * 20 19 18 23 23 C 1.38248 * 128.47725 * 212.35339 * 22 20 19 24 24 N 1.31238 * 111.89225 * 179.85287 * 23 22 20 25 25 N 1.27334 * 120.03485 * 0.48892 * 24 23 22 26 26 S 1.56641 * 109.74281 * 359.72040 * 25 24 23 27 27 C 1.46884 * 120.76897 * 332.72681 * 9 7 2 28 28 H 0.96997 * 120.00004 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.61500 * 5.93289 * 10 9 7 30 30 H 1.09003 * 109.75204 * 245.50176 * 10 9 7 31 31 H 1.08996 * 109.45474 * 295.29937 * 11 10 9 32 32 H 1.09007 * 109.44973 * 175.36573 * 11 10 9 33 33 H 1.09004 * 109.49599 * 57.92445 * 16 14 12 34 34 H 1.09002 * 109.49220 * 178.00451 * 16 14 12 35 35 H 1.08993 * 109.47235 * 180.64993 * 17 16 14 36 36 H 1.08994 * 109.46794 * 300.64885 * 17 16 14 37 37 H 1.08991 * 109.54626 * 65.80365 * 18 17 16 38 38 H 1.09006 * 109.54273 * 186.07711 * 18 17 16 39 39 H 1.08006 * 124.05143 * 0.02562 * 23 22 20 40 40 H 1.08998 * 109.52292 * 353.27520 * 27 9 7 41 41 H 1.09004 * 109.51366 * 113.39029 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0574 -1.2210 -0.2645 9 7 1.3673 -2.3641 0.3336 10 6 1.8256 -3.6561 -0.1962 11 6 2.0723 -4.6065 0.9784 12 6 0.8044 -4.7078 1.8316 13 1 -0.0151 -5.1116 1.2372 14 6 0.4328 -3.3212 2.3655 15 1 -0.4807 -3.3961 2.9552 16 6 1.5551 -2.8084 3.2677 17 6 1.7118 -3.7481 4.4663 18 6 2.0723 -5.1517 3.9711 19 7 1.0839 -5.5934 2.9752 20 6 0.4368 -6.7673 3.1145 21 8 -0.3077 -7.1593 2.2362 22 6 0.6312 -7.5751 4.3292 23 6 0.6112 -8.9513 4.4594 24 7 0.8266 -9.3288 5.6977 25 7 1.0120 -8.4567 6.6068 26 16 0.9406 -7.0208 5.9851 27 6 0.2041 -2.3481 1.2304 28 1 -0.4850 0.8400 0.0004 29 1 2.7516 -3.5152 -0.7537 30 1 1.0636 -4.0761 -0.8528 31 1 2.8909 -4.2247 1.5885 32 1 2.3336 -5.5939 0.5977 33 1 2.4884 -2.7773 2.7054 34 1 1.3091 -1.8068 3.6206 35 1 2.5039 -3.3780 5.1171 36 1 0.7746 -3.7883 5.0214 37 1 3.0578 -5.1323 3.5059 38 1 2.0784 -5.8449 4.8124 39 1 0.4415 -9.6339 3.6398 40 1 0.0650 -1.3431 1.6287 41 1 -0.6863 -2.6471 0.6772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021533260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:44 Heat of formation + Delta-G solvation = 70.619309 kcal Electronic energy + Delta-G solvation = -25968.247893 eV Core-core repulsion = 22397.721021 eV Total energy + Delta-G solvation = -3570.526872 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08496 -40.42390 -38.21058 -35.75678 -33.03341 -32.77720 -32.06692 -30.44253 -29.63466 -27.77620 -25.80545 -25.12326 -23.33473 -22.40962 -22.04766 -21.32842 -19.96486 -19.20368 -17.99859 -17.37413 -16.78758 -16.39069 -15.91091 -15.38207 -15.07345 -14.90728 -14.57013 -14.26556 -13.76157 -13.66325 -13.24020 -13.08924 -12.79060 -12.73868 -12.55068 -12.40138 -12.14927 -11.66978 -11.32990 -11.11539 -10.82993 -10.73055 -10.62808 -10.44706 -10.37409 -10.23339 -10.17043 -10.11990 -10.08831 -9.78575 -9.68416 -9.53326 -8.62756 -8.45795 -6.75552 -5.85263 -3.27551 -0.48520 0.49965 1.22157 1.76925 2.67878 2.82630 3.32126 3.40942 3.42155 3.76051 4.19154 4.43478 4.48951 4.63499 4.91514 5.02646 5.26243 5.28265 5.33218 5.35480 5.39551 5.51608 5.60108 5.75633 5.90936 5.93192 6.06685 6.20469 6.29685 6.33494 6.36847 6.59512 6.68575 6.75601 6.85058 6.92049 7.21499 7.26907 7.39509 7.57705 7.73440 7.90067 8.37347 9.14172 9.77175 10.33687 11.23337 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.003502 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.419227 B = 7994.243423 C = 8452.726389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.589 5.589 10 C 0.147 3.853 11 C -0.141 4.141 12 C 0.157 3.843 13 H 0.098 0.902 14 C -0.114 4.114 15 H 0.058 0.942 16 C -0.106 4.106 17 C -0.136 4.136 18 C 0.103 3.897 19 N -0.594 5.594 20 C 0.597 3.403 21 O -0.518 6.518 22 C -0.279 4.279 23 C 0.064 3.936 24 N -0.252 5.252 25 N -0.276 5.276 26 S 0.436 5.564 27 C 0.176 3.824 28 H 0.254 0.746 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.214 0.786 40 H 0.097 0.903 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.535 -11.411 11.220 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.181 4.181 12 C 0.056 3.944 13 H 0.116 0.884 14 C -0.135 4.135 15 H 0.076 0.924 16 C -0.143 4.143 17 C -0.174 4.174 18 C -0.021 4.021 19 N -0.326 5.326 20 C 0.381 3.619 21 O -0.395 6.395 22 C -0.420 4.420 23 C -0.102 4.102 24 N -0.116 5.116 25 N -0.256 5.256 26 S 0.571 5.429 27 C 0.050 3.950 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.230 0.770 40 H 0.115 0.885 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.383 -11.373 12.678 17.365 hybrid contribution 0.107 0.402 -1.310 1.375 sum 3.490 -10.971 11.368 16.179 Atomic orbital electron populations 1.70017 1.05218 1.25423 1.54025 1.25022 0.95262 0.98330 1.00922 0.86256 0.79346 0.84065 0.77302 1.20283 1.21773 1.21585 1.19195 0.92386 0.84508 1.41817 0.91561 1.44054 1.34049 1.01427 1.51598 1.20857 0.98038 0.86738 0.92399 1.22413 0.96999 0.99686 0.98992 1.21473 0.98967 0.88911 0.85006 0.88388 1.21794 0.97665 0.94614 0.99460 0.92367 1.21498 1.00548 0.97817 0.94467 1.22013 1.02040 0.94071 0.99303 1.22061 0.92906 0.96494 0.90686 1.48475 1.39864 1.18335 1.25919 1.16568 0.80819 0.80708 0.83855 1.90856 1.37722 1.70077 1.40806 1.28165 1.14214 0.98498 1.01154 1.24432 0.97876 0.92904 0.95002 1.70741 1.14726 1.27459 0.98691 1.78745 1.20145 1.01091 1.25651 1.82846 1.48427 1.16821 0.94765 1.20451 0.88619 0.98085 0.87851 0.93630 0.92359 0.96112 0.91544 0.92857 0.90283 0.91534 0.90533 0.91740 0.90097 0.92043 0.76996 0.88480 0.96336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.83 11.10 55.49 0.62 -24.21 16 2 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 3 Si 0.90 20.59 29.58 -169.99 -5.03 15.56 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.33 9.61 -15.06 -0.14 -6.47 16 8 H 0.07 1.66 7.88 -52.48 -0.41 1.25 16 9 N -0.59 -13.42 2.64 -173.53 -0.46 -13.88 16 10 C 0.15 2.84 6.51 -3.74 -0.02 2.82 16 11 C -0.14 -2.25 5.05 -26.60 -0.13 -2.38 16 12 C 0.16 2.52 2.62 -67.33 -0.18 2.34 16 13 H 0.10 1.77 7.09 -51.93 -0.37 1.40 16 14 C -0.11 -1.94 2.39 -91.49 -0.22 -2.16 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 16 C -0.11 -1.59 4.82 -26.74 -0.13 -1.71 16 17 C -0.14 -1.49 6.09 -26.59 -0.16 -1.65 16 18 C 0.10 1.10 5.65 -3.64 -0.02 1.08 16 19 N -0.59 -8.00 2.69 -166.10 -0.45 -8.45 16 20 C 0.60 8.39 7.67 -12.64 -0.10 8.30 16 21 O -0.52 -8.98 16.56 5.25 0.09 -8.89 16 22 C -0.28 -3.19 6.08 -35.95 -0.22 -3.41 16 23 C 0.06 0.69 11.67 -17.80 -0.21 0.48 16 24 N -0.25 -3.02 11.54 30.36 0.35 -2.67 16 25 N -0.28 -3.21 12.51 60.35 0.75 -2.46 16 26 S 0.44 4.11 20.26 -107.50 -2.18 1.93 16 27 C 0.18 3.84 4.62 -4.71 -0.02 3.82 16 28 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.06 1.11 7.94 -51.93 -0.41 0.69 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.03 5.42 -51.93 -0.28 0.75 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.08 1.31 6.19 -51.93 -0.32 0.99 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 0.83 7.30 -51.93 -0.38 0.46 16 38 H 0.06 0.55 3.45 -25.16 -0.09 0.47 16 39 H 0.21 1.78 8.06 -52.48 -0.42 1.36 16 40 H 0.10 2.38 5.97 -51.93 -0.31 2.07 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -29.46 330.54 -8.05 -37.52 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -5.09 Total: -0.49 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -1.64 Total: 1.04 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.82 Total: -51.66 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -2.18 Total: 1.93 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.46 -8.05 -37.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021533260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.135 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds