Wall clock time and date at job start Fri Apr 10 2020 14:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99804 * 2 1 4 4 H 1.48499 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47216 * 300.00483 * 3 2 1 6 6 H 1.48498 * 109.46993 * 60.00637 * 3 2 1 7 7 C 1.38813 * 120.00044 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00037 * 163.60753 * 7 2 1 9 9 N 1.36939 * 119.99933 * 343.60799 * 7 2 1 10 10 C 1.46967 * 120.76713 * 152.75595 * 9 7 2 11 11 C 1.53099 * 108.62290 * 125.68061 * 10 9 7 12 12 C 1.53159 * 109.57821 * 55.33885 * 11 10 9 13 13 H 1.08999 * 110.06772 * 61.32664 * 12 11 10 14 14 C 1.53157 * 109.57820 * 300.15564 * 12 11 10 15 15 H 1.08996 * 109.25289 * 178.88240 * 14 12 11 16 16 C 1.52853 * 109.35306 * 297.62858 * 14 12 11 17 17 C 1.53119 * 109.34442 * 297.96010 * 16 14 12 18 18 C 1.53145 * 109.47923 * 60.64989 * 17 16 14 19 19 N 1.47103 * 109.62578 * 306.36403 * 18 17 16 20 20 C 1.34772 * 120.94111 * 233.61621 * 19 18 17 21 21 O 1.21627 * 119.99946 * 185.07562 * 20 19 18 22 22 C 1.47166 * 120.00065 * 5.07028 * 20 19 18 23 23 C 1.38248 * 128.47725 * 212.35339 * 22 20 19 24 24 N 1.31238 * 111.89225 * 179.85287 * 23 22 20 25 25 N 1.27334 * 120.03485 * 0.48892 * 24 23 22 26 26 S 1.56641 * 109.74281 * 359.72040 * 25 24 23 27 27 C 1.46884 * 120.76897 * 332.72681 * 9 7 2 28 28 H 0.96997 * 120.00004 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.61500 * 5.93289 * 10 9 7 30 30 H 1.09003 * 109.75204 * 245.50176 * 10 9 7 31 31 H 1.08996 * 109.45474 * 295.29937 * 11 10 9 32 32 H 1.09007 * 109.44973 * 175.36573 * 11 10 9 33 33 H 1.09004 * 109.49599 * 57.92445 * 16 14 12 34 34 H 1.09002 * 109.49220 * 178.00451 * 16 14 12 35 35 H 1.08993 * 109.47235 * 180.64993 * 17 16 14 36 36 H 1.08994 * 109.46794 * 300.64885 * 17 16 14 37 37 H 1.08991 * 109.54626 * 65.80365 * 18 17 16 38 38 H 1.09006 * 109.54273 * 186.07711 * 18 17 16 39 39 H 1.08006 * 124.05143 * 0.02562 * 23 22 20 40 40 H 1.08998 * 109.52292 * 353.27520 * 27 9 7 41 41 H 1.09004 * 109.51366 * 113.39029 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0574 -1.2210 -0.2645 9 7 1.3673 -2.3641 0.3336 10 6 1.8256 -3.6561 -0.1962 11 6 2.0723 -4.6065 0.9784 12 6 0.8044 -4.7078 1.8316 13 1 -0.0151 -5.1116 1.2372 14 6 0.4328 -3.3212 2.3655 15 1 -0.4807 -3.3961 2.9552 16 6 1.5551 -2.8084 3.2677 17 6 1.7118 -3.7481 4.4663 18 6 2.0723 -5.1517 3.9711 19 7 1.0839 -5.5934 2.9752 20 6 0.4368 -6.7673 3.1145 21 8 -0.3077 -7.1593 2.2362 22 6 0.6312 -7.5751 4.3292 23 6 0.6112 -8.9513 4.4594 24 7 0.8266 -9.3288 5.6977 25 7 1.0120 -8.4567 6.6068 26 16 0.9406 -7.0208 5.9851 27 6 0.2041 -2.3481 1.2304 28 1 -0.4850 0.8400 0.0004 29 1 2.7516 -3.5152 -0.7537 30 1 1.0636 -4.0761 -0.8528 31 1 2.8909 -4.2247 1.5885 32 1 2.3336 -5.5939 0.5977 33 1 2.4884 -2.7773 2.7054 34 1 1.3091 -1.8068 3.6206 35 1 2.5039 -3.3780 5.1171 36 1 0.7746 -3.7883 5.0214 37 1 3.0578 -5.1323 3.5059 38 1 2.0784 -5.8449 4.8124 39 1 0.4415 -9.6339 3.6398 40 1 0.0650 -1.3431 1.6287 41 1 -0.6863 -2.6471 0.6772 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021533260.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:44 Heat of formation + Delta-G solvation = 52.494605 kcal Electronic energy + Delta-G solvation = -25969.033839 eV Core-core repulsion = 22397.721021 eV Total energy + Delta-G solvation = -3571.312818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.02981 -41.53817 -39.52204 -37.18645 -34.52782 -34.06400 -33.16285 -31.87629 -31.17037 -28.76860 -27.35943 -26.41206 -24.65648 -23.58936 -23.40107 -22.70682 -20.95036 -20.22525 -19.44587 -18.62200 -18.11739 -17.56339 -16.95433 -16.82174 -16.25009 -16.14182 -15.84721 -15.56929 -15.17699 -15.03519 -14.74598 -14.27935 -14.14962 -13.90308 -13.77428 -13.61878 -13.23101 -12.98438 -12.92550 -12.60547 -12.54801 -12.28125 -11.95974 -11.90456 -11.79250 -11.54483 -11.39580 -11.30194 -11.22617 -11.11782 -11.02365 -10.58190 -10.49681 -9.71679 -8.65999 -7.83191 -5.27748 -1.35068 -0.32838 0.39434 0.90175 1.49124 1.52563 1.61527 1.62163 1.76475 2.54741 2.91307 3.26238 3.33250 3.63457 3.65835 3.74372 3.84097 3.95372 3.99224 4.21550 4.36260 4.43702 4.48386 4.54817 4.59408 4.74436 4.82964 4.92104 5.00116 5.06781 5.10635 5.14953 5.24079 5.34024 5.42338 5.52765 5.65119 5.70506 5.75476 6.18646 6.42608 6.55877 6.80879 7.18563 7.88637 8.41288 9.23730 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.003502 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.419227 B = 7994.243423 C = 8452.726389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.049 4.049 3 Si 0.962 3.038 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.071 0.929 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.125 4.125 12 C 0.166 3.834 13 H 0.073 0.927 14 C -0.106 4.106 15 H 0.061 0.939 16 C -0.100 4.100 17 C -0.128 4.128 18 C 0.101 3.899 19 N -0.592 5.592 20 C 0.601 3.399 21 O -0.558 6.558 22 C -0.304 4.304 23 C 0.075 3.925 24 N -0.272 5.272 25 N -0.297 5.297 26 S 0.511 5.489 27 C 0.187 3.813 28 H 0.248 0.752 29 H 0.063 0.937 30 H 0.008 0.992 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.230 0.770 40 H 0.066 0.934 41 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 -12.288 13.447 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.244 4.244 3 Si 0.791 3.209 4 H -0.189 1.189 5 H -0.227 1.227 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.088 0.912 9 N -0.325 5.325 10 C 0.016 3.984 11 C -0.165 4.165 12 C 0.064 3.936 13 H 0.091 0.909 14 C -0.126 4.126 15 H 0.079 0.921 16 C -0.138 4.138 17 C -0.166 4.166 18 C -0.022 4.022 19 N -0.323 5.323 20 C 0.386 3.614 21 O -0.437 6.437 22 C -0.445 4.445 23 C -0.092 4.092 24 N -0.136 5.136 25 N -0.277 5.277 26 S 0.647 5.353 27 C 0.061 3.939 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.246 0.754 40 H 0.085 0.915 41 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges 5.456 -12.281 14.942 20.096 hybrid contribution -0.549 0.672 -2.019 2.197 sum 4.907 -11.609 12.924 18.052 Atomic orbital electron populations 1.70183 1.06664 1.25581 1.55920 1.25711 0.95876 1.01229 1.01567 0.85282 0.78823 0.80284 0.76511 1.18865 1.22693 1.21734 1.19509 0.92654 0.85460 1.40420 0.91178 1.44258 1.33967 1.02068 1.52192 1.20978 0.97603 0.85962 0.93808 1.22210 0.97201 0.99439 0.97623 1.21079 0.98212 0.88536 0.85802 0.90925 1.21557 0.99042 0.94133 0.97917 0.92101 1.21389 0.98545 0.98292 0.95527 1.21995 1.03941 0.92956 0.97745 1.22290 0.92571 0.96659 0.90702 1.48369 1.40322 1.17916 1.25685 1.16769 0.79881 0.80595 0.84123 1.90839 1.39341 1.71042 1.42499 1.27873 1.16392 0.98729 1.01481 1.24721 0.96377 0.93046 0.95072 1.70811 1.15884 1.27904 0.98954 1.78567 1.20500 1.02336 1.26334 1.82496 1.45854 1.14732 0.92241 1.20184 0.87268 0.97681 0.88808 0.94281 0.91873 0.97416 0.90255 0.91204 0.91548 0.92839 0.87247 0.90723 0.88736 0.90020 0.75422 0.91525 0.99914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.53 11.10 21.65 0.24 -53.29 16 2 C -0.05 -2.59 4.94 84.86 0.42 -2.17 16 3 Si 0.96 42.83 29.58 68.60 2.03 44.86 16 4 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 5 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.25 -12.82 9.61 84.03 0.81 -12.02 16 8 H 0.07 3.49 7.88 -2.91 -0.02 3.46 16 9 N -0.60 -28.03 2.64 -702.94 -1.86 -29.89 16 10 C 0.14 5.56 6.51 86.32 0.56 6.12 16 11 C -0.13 -3.83 5.05 30.68 0.15 -3.68 16 12 C 0.17 5.23 2.62 44.94 0.12 5.35 16 13 H 0.07 2.69 7.09 -2.39 -0.02 2.67 16 14 C -0.11 -3.59 2.39 -11.36 -0.03 -3.62 16 15 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 16 C -0.10 -2.84 4.82 30.59 0.15 -2.69 16 17 C -0.13 -2.32 6.09 30.68 0.19 -2.13 16 18 C 0.10 1.77 5.65 86.31 0.49 2.26 16 19 N -0.59 -14.70 2.69 -797.68 -2.14 -16.84 16 20 C 0.60 15.90 7.67 86.59 0.66 16.57 16 21 O -0.56 -19.13 16.56 -4.12 -0.07 -19.20 16 22 C -0.30 -6.19 6.08 24.62 0.15 -6.04 16 23 C 0.07 1.44 11.67 84.78 0.99 2.43 16 24 N -0.27 -5.90 11.54 -57.86 -0.67 -6.57 16 25 N -0.30 -6.07 12.51 37.02 0.46 -5.61 16 26 S 0.51 7.82 20.26 -56.49 -1.14 6.68 16 27 C 0.19 8.50 4.62 85.74 0.40 8.90 16 28 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.06 2.37 7.94 -2.39 -0.02 2.35 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.31 16 31 H 0.08 2.26 5.42 -2.39 -0.01 2.25 16 32 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.07 2.07 6.19 -2.38 -0.01 2.05 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.51 7.30 -2.39 -0.02 1.49 16 38 H 0.08 1.10 3.45 -19.40 -0.07 1.03 16 39 H 0.23 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.07 3.44 5.97 -2.39 -0.01 3.42 16 41 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 Total: -1.00 -66.27 330.54 2.91 -63.36 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 1.01 Total: 7.23 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.06 Total: 9.28 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -3.97 Total: -112.21 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.07 Total: -19.20 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 7.82 SS G_CDS: -1.14 Total: 6.68 kcal Total: -66.27 2.91 -63.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021533260.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.856 kcal (2) G-P(sol) polarization free energy of solvation -66.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds