Wall clock time and date at job start Fri Apr 10 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99905 * 2 1 4 4 H 1.48492 * 109.47163 * 275.19258 * 3 2 1 5 5 H 1.48496 * 109.47214 * 35.19703 * 3 2 1 6 6 H 1.48506 * 109.46998 * 155.19353 * 3 2 1 7 7 C 1.38816 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99616 * 343.17380 * 7 2 1 9 9 N 1.36927 * 120.00182 * 163.18284 * 7 2 1 10 10 C 1.46976 * 120.77478 * 331.61336 * 9 7 2 11 11 C 1.53097 * 108.62514 * 234.33689 * 10 9 7 12 12 C 1.53161 * 109.57899 * 304.65988 * 11 10 9 13 13 H 1.08998 * 110.06550 * 299.39622 * 12 11 10 14 14 C 1.53270 * 109.61587 * 60.57823 * 12 11 10 15 15 H 1.08998 * 109.33053 * 180.41958 * 14 12 11 16 16 C 1.52862 * 109.35699 * 61.63317 * 14 12 11 17 17 C 1.53121 * 109.33942 * 62.11778 * 16 14 12 18 18 C 1.53138 * 109.48252 * 299.34784 * 17 16 14 19 19 N 1.47026 * 109.11068 * 53.94762 * 18 17 16 20 20 C 1.34776 * 120.80887 * 125.99957 * 19 18 17 21 21 O 1.21611 * 120.00014 * 186.88585 * 20 19 18 22 22 C 1.47447 * 120.00476 * 6.87741 * 20 19 18 23 23 C 1.37980 * 124.15888 * 187.26239 * 22 20 19 24 24 S 1.72103 * 104.03288 * 180.02562 * 23 22 20 25 25 N 1.56400 * 96.15690 * 359.97438 * 24 23 22 26 26 N 1.27417 * 109.87463 * 359.72644 * 25 24 23 27 27 C 1.46889 * 120.77745 * 151.63863 * 9 7 2 28 28 H 0.96999 * 120.00312 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.61394 * 354.07760 * 10 9 7 30 30 H 1.09000 * 109.61265 * 114.42155 * 10 9 7 31 31 H 1.09001 * 109.44677 * 64.69241 * 11 10 9 32 32 H 1.08998 * 109.44988 * 184.62675 * 11 10 9 33 33 H 1.08996 * 109.49075 * 182.07302 * 16 14 12 34 34 H 1.08990 * 109.49607 * 302.13186 * 16 14 12 35 35 H 1.09002 * 109.47231 * 59.35348 * 17 16 14 36 36 H 1.09001 * 109.46949 * 179.34107 * 17 16 14 37 37 H 1.08999 * 109.54383 * 173.93315 * 18 17 16 38 38 H 1.08998 * 109.54325 * 294.20833 * 18 17 16 39 39 H 1.07999 * 127.98137 * 359.96290 * 23 22 20 40 40 H 1.09003 * 109.52273 * 246.54118 * 27 9 7 41 41 H 1.09003 * 109.51929 * 6.65406 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3879 2.1098 -1.3942 5 1 1.5068 2.6185 0.8070 6 1 3.5983 1.4110 0.5874 7 6 2.0102 -1.2022 -0.0005 8 1 1.5049 -2.1176 0.2698 9 7 3.3356 -1.2274 -0.3436 10 6 3.8925 -0.2287 -1.2670 11 6 4.5904 -0.9608 -2.4163 12 6 5.6375 -1.9246 -1.8502 13 1 6.3868 -1.3719 -1.2835 14 6 4.9522 -2.9570 -0.9481 15 1 5.7022 -3.6357 -0.5420 16 6 3.9556 -3.7698 -1.7745 17 6 4.7070 -4.5297 -2.8711 18 6 5.4184 -3.5313 -3.7888 19 7 6.2614 -2.6445 -2.9737 20 6 7.5731 -2.4967 -3.2460 21 8 8.2829 -1.8604 -2.4909 22 6 8.1475 -3.1065 -4.4594 23 6 9.4964 -3.1333 -4.7488 24 16 9.5828 -3.9533 -6.2595 25 7 8.0440 -4.1878 -6.4114 26 7 7.4305 -3.7029 -5.4053 27 6 4.2339 -2.2535 0.2021 28 1 -0.4850 0.8400 0.0004 29 1 3.0887 0.3918 -1.6631 30 1 4.6114 0.3974 -0.7386 31 1 3.8528 -1.5221 -2.9899 32 1 5.0790 -0.2345 -3.0658 33 1 3.4404 -4.4798 -1.1277 34 1 3.2279 -3.0984 -2.2301 35 1 5.4428 -5.1922 -2.4152 36 1 3.9997 -5.1193 -3.4545 37 1 6.0396 -4.0714 -4.5033 38 1 4.6782 -2.9363 -4.3237 39 1 10.3099 -2.7315 -4.1631 40 1 4.9679 -1.7840 0.8570 41 1 3.6534 -2.9817 0.7687 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021643085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:22 Heat of formation + Delta-G solvation = 83.028610 kcal Electronic energy + Delta-G solvation = -26090.631973 eV Core-core repulsion = 22520.643209 eV Total energy + Delta-G solvation = -3569.988764 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56341 -40.09166 -38.21289 -35.81582 -33.06616 -32.54059 -32.16853 -30.50922 -30.13926 -27.59339 -25.72904 -25.43720 -23.30416 -22.60311 -22.19482 -21.45363 -20.66088 -18.82709 -17.98227 -16.81979 -16.67089 -16.43057 -16.22513 -15.70089 -15.18655 -14.75740 -14.69192 -14.11635 -13.96540 -13.74679 -13.25850 -13.09360 -13.02663 -12.50970 -12.41313 -12.39192 -12.19904 -11.96628 -11.64371 -11.30188 -10.91040 -10.74684 -10.46582 -10.41389 -10.38508 -10.31392 -10.28081 -10.04944 -9.95402 -9.81440 -9.52776 -9.43090 -8.65462 -8.44865 -6.95948 -5.92964 -3.31859 -0.28870 0.56569 1.14828 1.17415 2.88998 2.97514 3.33190 3.49997 3.51752 3.52963 4.34451 4.45229 4.53421 4.86768 4.93562 5.05877 5.18120 5.20294 5.24405 5.39191 5.46939 5.66073 5.73286 5.81823 6.02466 6.03742 6.09266 6.15173 6.20644 6.29605 6.34655 6.39170 6.57867 6.63016 6.67556 6.70687 6.77842 6.96701 7.13279 7.43121 7.96855 7.99354 8.33975 8.93718 9.72427 10.10346 11.22988 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.025954 B = 0.003533 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.574737 B = 7924.375377 C = 8258.397213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.022 3.978 3 Si 0.884 3.116 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.267 1.267 7 C -0.256 4.256 8 H 0.087 0.913 9 N -0.603 5.603 10 C 0.128 3.872 11 C -0.143 4.143 12 C 0.154 3.846 13 H 0.098 0.902 14 C -0.109 4.109 15 H 0.063 0.937 16 C -0.110 4.110 17 C -0.132 4.132 18 C 0.078 3.922 19 N -0.581 5.581 20 C 0.597 3.403 21 O -0.533 6.533 22 C -0.014 4.014 23 C -0.238 4.238 24 S 0.459 5.541 25 N -0.295 5.295 26 N -0.206 5.206 27 C 0.156 3.844 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.071 0.929 39 H 0.208 0.792 40 H 0.025 0.975 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.928 -9.657 -12.157 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.716 3.284 4 H -0.218 1.218 5 H -0.233 1.233 6 H -0.192 1.192 7 C -0.384 4.384 8 H 0.104 0.896 9 N -0.327 5.327 10 C 0.002 3.998 11 C -0.183 4.183 12 C 0.052 3.948 13 H 0.116 0.884 14 C -0.129 4.129 15 H 0.082 0.918 16 C -0.148 4.148 17 C -0.170 4.170 18 C -0.045 4.045 19 N -0.311 5.311 20 C 0.380 3.620 21 O -0.409 6.409 22 C -0.160 4.160 23 C -0.395 4.395 24 S 0.595 5.405 25 N -0.274 5.274 26 N -0.076 5.076 27 C 0.029 3.971 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.089 0.911 39 H 0.225 0.775 40 H 0.043 0.957 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 19.751 -10.167 -13.368 25.927 hybrid contribution 0.346 1.768 1.291 2.216 sum 20.097 -8.399 -12.077 24.906 Atomic orbital electron populations 1.69789 1.05681 1.26477 1.53607 1.25291 0.95251 0.97599 0.99477 0.86939 0.80122 0.84542 0.76840 1.21821 1.23320 1.19180 1.18904 0.82976 0.94402 1.42122 0.89586 1.44325 1.06770 1.31932 1.49638 1.21350 0.96572 0.92021 0.89853 1.22444 0.97880 0.98280 0.99703 1.21444 0.94629 0.92663 0.86023 0.88394 1.21859 0.97521 0.96532 0.97031 0.91848 1.21527 0.97885 0.98687 0.96681 1.21939 0.99404 0.97717 0.97922 1.22679 0.95533 0.92390 0.93918 1.48364 1.07237 1.43997 1.31544 1.16764 0.82292 0.80371 0.82617 1.90825 1.59574 1.42293 1.48228 1.22869 0.90658 1.03879 0.98631 1.28887 1.00954 1.05549 1.04118 1.81495 1.12397 1.36600 1.10056 1.78719 1.05137 1.23311 1.20264 1.71554 1.28939 1.09409 0.97654 1.20827 0.92496 0.91481 0.92265 0.92799 0.90855 0.95185 0.90746 0.92693 0.91975 0.89956 0.92450 0.90907 0.85637 0.91084 0.77471 0.95684 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.79 13.97 55.49 0.78 -27.02 16 2 C 0.02 0.64 5.31 -17.43 -0.09 0.55 16 3 Si 0.88 22.39 24.33 -169.99 -4.13 18.26 16 4 H -0.29 -7.15 6.74 56.52 0.38 -6.77 16 5 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.27 -6.60 6.16 56.52 0.35 -6.25 16 7 C -0.26 -6.95 10.07 -15.06 -0.15 -7.10 16 8 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 9 N -0.60 -13.87 2.42 -172.62 -0.42 -14.29 16 10 C 0.13 2.77 4.15 -3.73 -0.02 2.76 16 11 C -0.14 -2.59 5.02 -26.60 -0.13 -2.73 16 12 C 0.15 2.58 2.64 -67.27 -0.18 2.41 16 13 H 0.10 1.77 7.10 -51.93 -0.37 1.40 16 14 C -0.11 -1.78 2.46 -90.67 -0.22 -2.01 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 16 C -0.11 -1.73 4.86 -26.74 -0.13 -1.86 16 17 C -0.13 -1.71 6.08 -26.60 -0.16 -1.87 16 18 C 0.08 1.05 5.58 -3.68 -0.02 1.03 16 19 N -0.58 -8.73 2.66 -166.00 -0.44 -9.17 16 20 C 0.60 8.95 7.68 -12.51 -0.10 8.85 16 21 O -0.53 -9.22 16.29 5.27 0.09 -9.13 16 22 C -0.01 -0.17 6.64 -83.78 -0.56 -0.72 16 23 C -0.24 -2.01 11.22 30.64 0.34 -1.66 16 24 S 0.46 2.92 23.38 -107.50 -2.51 0.41 16 25 N -0.29 -3.05 12.49 60.35 0.75 -2.30 16 26 N -0.21 -2.47 7.92 32.74 0.26 -2.21 16 27 C 0.16 3.00 5.90 -3.95 -0.02 2.98 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.07 1.74 4.38 -51.93 -0.23 1.51 16 30 H 0.03 0.66 6.85 -51.93 -0.36 0.30 16 31 H 0.07 1.37 5.33 -51.93 -0.28 1.09 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.50 6.15 -51.93 -0.32 1.18 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.13 1.61 4.04 -100.13 -0.40 1.20 16 38 H 0.07 0.98 7.26 -51.93 -0.38 0.61 16 39 H 0.21 1.32 8.06 -52.49 -0.42 0.89 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -32.13 323.41 -7.53 -39.66 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -5.33 Total: 0.29 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.44 Total: 0.63 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.93 Total: -54.99 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.13 Total: 18.26 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.51 Total: 0.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.13 -7.53 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021643085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.692 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds