Wall clock time and date at job start Fri Apr 10 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99557 * 2 1 4 4 H 1.48493 * 109.47244 * 275.34274 * 3 2 1 5 5 H 1.48496 * 109.47161 * 35.34743 * 3 2 1 6 6 H 1.48506 * 109.46913 * 155.34307 * 3 2 1 7 7 C 1.38813 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99698 * 344.52789 * 7 2 1 9 9 N 1.36938 * 120.00018 * 164.53640 * 7 2 1 10 10 C 1.46856 * 120.46876 * 151.70813 * 9 7 2 11 11 C 1.53311 * 109.10490 * 127.38113 * 10 9 7 12 12 C 1.52841 * 108.95835 * 53.87429 * 11 10 9 13 13 H 1.08997 * 109.32500 * 57.87716 * 12 11 10 14 14 C 1.52838 * 109.41945 * 298.10366 * 12 11 10 15 15 H 1.09000 * 109.33798 * 303.40155 * 14 12 11 16 16 C 1.52824 * 109.23841 * 183.61849 * 14 12 11 17 17 C 1.53143 * 109.27118 * 61.67716 * 16 14 12 18 18 C 1.53134 * 109.61301 * 299.14123 * 17 16 14 19 19 N 1.46710 * 110.33135 * 178.38409 * 12 11 10 20 20 C 1.34777 * 120.84584 * 354.41879 * 19 12 11 21 21 O 1.21608 * 120.00060 * 6.15219 * 20 19 12 22 22 C 1.47448 * 120.00218 * 186.14945 * 20 19 12 23 23 C 1.37984 * 124.15634 * 187.49211 * 22 20 19 24 24 S 1.72103 * 104.03440 * 180.02562 * 23 22 20 25 25 N 1.56401 * 96.15370 * 0.02562 * 24 23 22 26 26 N 1.27417 * 109.87629 * 359.97438 * 25 24 23 27 27 C 1.47074 * 120.46113 * 331.72890 * 9 7 2 28 28 H 0.96997 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.53391 * 247.26900 * 10 9 7 30 30 H 1.09002 * 109.52911 * 7.49540 * 10 9 7 31 31 H 1.09003 * 109.56038 * 173.93365 * 11 10 9 32 32 H 1.08996 * 109.56487 * 294.15277 * 11 10 9 33 33 H 1.08997 * 109.50283 * 301.73110 * 16 14 12 34 34 H 1.09003 * 109.53504 * 181.63111 * 16 14 12 35 35 H 1.09004 * 109.44365 * 179.10163 * 17 16 14 36 36 H 1.08991 * 109.42650 * 59.17586 * 17 16 14 37 37 H 1.08996 * 109.54526 * 294.14600 * 18 17 16 38 38 H 1.09006 * 109.53871 * 173.88214 * 18 17 16 39 39 H 1.08004 * 127.97992 * 0.06117 * 23 22 20 40 40 H 1.08995 * 109.69005 * 113.58401 * 27 9 7 41 41 H 1.08995 * 109.72878 * 353.01458 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3847 2.1117 -1.3939 5 1 1.5086 2.6174 0.8100 6 1 3.5996 1.4103 0.5841 7 6 2.0103 -1.2021 -0.0005 8 1 1.4997 -2.1206 0.2486 9 7 3.3425 -1.2234 -0.3167 10 6 4.2230 -2.2599 0.2376 11 6 4.9809 -2.9401 -0.9084 12 6 5.6903 -1.8705 -1.7383 13 1 6.3628 -1.3024 -1.0956 14 6 4.6524 -0.9275 -2.3462 15 1 3.9414 -1.5056 -2.9365 16 6 5.3585 0.0850 -3.2472 17 6 6.0607 -0.6571 -4.3880 18 6 7.1053 -1.6167 -3.8108 19 7 6.4578 -2.4928 -2.8229 20 6 6.5621 -3.8333 -2.9147 21 8 5.9267 -4.5457 -2.1613 22 6 7.4465 -4.4363 -3.9288 23 6 7.5075 -5.7882 -4.1983 24 16 8.6867 -5.9123 -5.4457 25 7 8.9976 -4.3821 -5.5354 26 7 8.2832 -3.7449 -4.6945 27 6 3.9117 -0.2084 -1.2160 28 1 -0.4850 0.8400 0.0004 29 1 4.9351 -1.8035 0.9252 30 1 3.6248 -3.0001 0.7690 31 1 5.7143 -3.6349 -0.4992 32 1 4.2773 -3.4823 -1.5401 33 1 6.0952 0.6385 -2.6650 34 1 4.6258 0.7781 -3.6605 35 1 6.5521 0.0638 -5.0415 36 1 5.3250 -1.2226 -4.9597 37 1 7.8978 -1.0453 -3.3276 38 1 7.5275 -2.2216 -4.6134 39 1 6.9447 -6.5845 -3.7340 40 1 4.6081 0.4226 -0.6637 41 1 3.1121 0.4042 -1.6325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021643087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:24 Heat of formation + Delta-G solvation = 95.011152 kcal Electronic energy + Delta-G solvation = -26127.088015 eV Core-core repulsion = 22557.618853 eV Total energy + Delta-G solvation = -3569.469162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58013 -40.16151 -37.92669 -36.06434 -33.08443 -32.92836 -32.12831 -30.57502 -29.75538 -27.59010 -25.67950 -25.37714 -23.34187 -22.77040 -22.20057 -20.97770 -20.02318 -19.69502 -18.41552 -16.85639 -16.57287 -16.37536 -16.00331 -15.76536 -15.14075 -14.87400 -14.40407 -14.33616 -13.93967 -13.84628 -13.25127 -13.11075 -12.77668 -12.67349 -12.54713 -12.30051 -12.06671 -11.93621 -11.53555 -11.21110 -11.13256 -11.02237 -10.75582 -10.46619 -10.37212 -10.20030 -10.02903 -9.95552 -9.93472 -9.59044 -9.40146 -9.32692 -8.63109 -8.35945 -6.88885 -5.89099 -3.28096 -0.26687 0.58763 1.17582 1.18544 2.89651 3.02585 3.32639 3.49164 3.51005 3.54121 4.36400 4.47650 4.54931 4.84123 4.94610 5.00435 5.08013 5.17653 5.25254 5.38951 5.51081 5.55455 5.69618 5.87350 5.95860 5.98866 6.11400 6.13059 6.20296 6.22945 6.31261 6.40387 6.49850 6.62788 6.76858 6.80581 6.86670 7.10482 7.16270 7.42949 8.01985 8.07883 8.38513 8.98727 9.76212 10.13546 11.27181 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.003660 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.051760 B = 7647.928370 C = 8300.694315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.019 3.981 3 Si 0.887 3.113 4 H -0.290 1.290 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.256 4.256 8 H 0.086 0.914 9 N -0.608 5.608 10 C 0.144 3.856 11 C -0.121 4.121 12 C 0.157 3.843 13 H 0.070 0.930 14 C -0.114 4.114 15 H 0.077 0.923 16 C -0.119 4.119 17 C -0.131 4.131 18 C 0.080 3.920 19 N -0.584 5.584 20 C 0.596 3.404 21 O -0.512 6.512 22 C -0.016 4.016 23 C -0.236 4.236 24 S 0.458 5.542 25 N -0.297 5.297 26 N -0.209 5.209 27 C 0.135 3.865 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.128 0.872 39 H 0.209 0.791 40 H 0.030 0.970 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.869 -9.782 -12.265 25.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.179 4.179 3 Si 0.718 3.282 4 H -0.218 1.218 5 H -0.234 1.234 6 H -0.191 1.191 7 C -0.384 4.384 8 H 0.104 0.896 9 N -0.331 5.331 10 C 0.017 3.983 11 C -0.160 4.160 12 C 0.056 3.944 13 H 0.088 0.912 14 C -0.135 4.135 15 H 0.095 0.905 16 C -0.157 4.157 17 C -0.169 4.169 18 C -0.044 4.044 19 N -0.315 5.315 20 C 0.378 3.622 21 O -0.388 6.388 22 C -0.163 4.163 23 C -0.393 4.393 24 S 0.594 5.406 25 N -0.277 5.277 26 N -0.079 5.079 27 C 0.008 3.992 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.145 0.855 39 H 0.226 0.774 40 H 0.048 0.952 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.704 -9.752 -13.150 26.395 hybrid contribution -0.731 1.179 1.007 1.714 sum 19.973 -8.573 -12.143 24.897 Atomic orbital electron populations 1.69791 1.05655 1.26377 1.54034 1.25311 0.95303 0.97615 0.99644 0.86917 0.80045 0.84441 0.76786 1.21802 1.23375 1.19130 1.18985 0.82682 0.94402 1.42356 0.89614 1.44405 1.06410 1.31092 1.51204 1.21130 0.92565 0.91218 0.93356 1.22504 0.99695 0.95840 0.97951 1.21270 0.91959 0.94682 0.86531 0.91177 1.22023 0.96810 0.96738 0.97955 0.90467 1.21577 0.99556 0.97985 0.96559 1.21902 0.98449 0.98402 0.98169 1.22657 0.94814 0.93740 0.93150 1.48097 1.50637 1.04436 1.28364 1.16836 0.80791 0.82481 0.82069 1.90924 1.44497 1.61619 1.41723 1.23045 1.00851 0.90986 1.01384 1.28900 1.05505 1.00749 1.04153 1.81498 1.22967 1.12983 1.23179 1.78687 1.22840 1.04809 1.21373 1.71522 1.04642 1.28668 1.03103 1.21421 0.96135 0.91810 0.89791 0.92850 0.96225 0.91546 0.90536 0.90624 0.91923 0.91517 0.90859 0.91817 0.91435 0.85481 0.77386 0.95193 0.90921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.55 13.97 55.49 0.78 -27.78 16 2 C 0.02 0.57 5.32 -17.43 -0.09 0.48 16 3 Si 0.89 22.61 24.29 -169.99 -4.13 18.48 16 4 H -0.29 -7.12 6.76 56.52 0.38 -6.74 16 5 H -0.31 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.56 5.98 56.52 0.34 -6.22 16 7 C -0.26 -7.31 10.06 -15.06 -0.15 -7.46 16 8 H 0.09 2.63 8.05 -52.49 -0.42 2.21 16 9 N -0.61 -14.79 2.79 -172.26 -0.48 -15.27 16 10 C 0.14 2.98 6.51 -3.69 -0.02 2.96 16 11 C -0.12 -2.24 3.80 -26.65 -0.10 -2.34 16 12 C 0.16 2.65 2.60 -67.98 -0.18 2.47 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C -0.11 -2.06 2.20 -90.76 -0.20 -2.26 16 15 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 16 C -0.12 -1.73 5.24 -26.75 -0.14 -1.87 16 17 C -0.13 -1.61 6.07 -26.59 -0.16 -1.77 16 18 C 0.08 1.00 6.06 -3.66 -0.02 0.97 16 19 N -0.58 -8.66 2.98 -166.85 -0.50 -9.15 16 20 C 0.60 8.87 7.61 -12.51 -0.10 8.77 16 21 O -0.51 -8.73 12.36 5.27 0.07 -8.67 16 22 C -0.02 -0.19 6.64 -83.78 -0.56 -0.75 16 23 C -0.24 -2.02 11.22 30.64 0.34 -1.68 16 24 S 0.46 2.94 23.38 -107.50 -2.51 0.42 16 25 N -0.30 -3.01 12.49 60.35 0.75 -2.26 16 26 N -0.21 -2.44 7.93 32.74 0.26 -2.18 16 27 C 0.13 2.95 3.46 -3.69 -0.01 2.93 16 28 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 1.39 7.92 -51.93 -0.41 0.98 16 31 H 0.08 1.37 6.49 -51.93 -0.34 1.03 16 32 H 0.08 1.57 7.11 -51.93 -0.37 1.20 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.13 1.55 4.07 -97.54 -0.40 1.15 16 39 H 0.21 1.39 8.06 -52.48 -0.42 0.97 16 40 H 0.03 0.65 6.69 -51.93 -0.35 0.30 16 41 H 0.07 1.74 4.35 -51.93 -0.23 1.52 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -33.10 323.01 -7.82 -40.92 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.53 Total: 0.16 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.39 Total: 0.46 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.81 Total: -56.64 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.07 Total: -8.67 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.13 Total: 18.48 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -2.51 Total: 0.42 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.10 -7.82 -40.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021643087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.930 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds