Wall clock time and date at job start Fri Apr 10 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99557 * 2 1 4 4 H 1.48493 * 109.47244 * 275.34274 * 3 2 1 5 5 H 1.48496 * 109.47161 * 35.34743 * 3 2 1 6 6 H 1.48506 * 109.46913 * 155.34307 * 3 2 1 7 7 C 1.38813 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99698 * 344.52789 * 7 2 1 9 9 N 1.36938 * 120.00018 * 164.53640 * 7 2 1 10 10 C 1.46856 * 120.46876 * 151.70813 * 9 7 2 11 11 C 1.53311 * 109.10490 * 127.38113 * 10 9 7 12 12 C 1.52841 * 108.95835 * 53.87429 * 11 10 9 13 13 H 1.08997 * 109.32500 * 57.87716 * 12 11 10 14 14 C 1.52838 * 109.41945 * 298.10366 * 12 11 10 15 15 H 1.09000 * 109.33798 * 303.40155 * 14 12 11 16 16 C 1.52824 * 109.23841 * 183.61849 * 14 12 11 17 17 C 1.53143 * 109.27118 * 61.67716 * 16 14 12 18 18 C 1.53134 * 109.61301 * 299.14123 * 17 16 14 19 19 N 1.46710 * 110.33135 * 178.38409 * 12 11 10 20 20 C 1.34777 * 120.84584 * 354.41879 * 19 12 11 21 21 O 1.21608 * 120.00060 * 6.15219 * 20 19 12 22 22 C 1.47448 * 120.00218 * 186.14945 * 20 19 12 23 23 C 1.37984 * 124.15634 * 187.49211 * 22 20 19 24 24 S 1.72103 * 104.03440 * 180.02562 * 23 22 20 25 25 N 1.56401 * 96.15370 * 0.02562 * 24 23 22 26 26 N 1.27417 * 109.87629 * 359.97438 * 25 24 23 27 27 C 1.47074 * 120.46113 * 331.72890 * 9 7 2 28 28 H 0.96997 * 119.99858 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.53391 * 247.26900 * 10 9 7 30 30 H 1.09002 * 109.52911 * 7.49540 * 10 9 7 31 31 H 1.09003 * 109.56038 * 173.93365 * 11 10 9 32 32 H 1.08996 * 109.56487 * 294.15277 * 11 10 9 33 33 H 1.08997 * 109.50283 * 301.73110 * 16 14 12 34 34 H 1.09003 * 109.53504 * 181.63111 * 16 14 12 35 35 H 1.09004 * 109.44365 * 179.10163 * 17 16 14 36 36 H 1.08991 * 109.42650 * 59.17586 * 17 16 14 37 37 H 1.08996 * 109.54526 * 294.14600 * 18 17 16 38 38 H 1.09006 * 109.53871 * 173.88214 * 18 17 16 39 39 H 1.08004 * 127.97992 * 0.06117 * 23 22 20 40 40 H 1.08995 * 109.69005 * 113.58401 * 27 9 7 41 41 H 1.08995 * 109.72878 * 353.01458 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3847 2.1117 -1.3939 5 1 1.5086 2.6174 0.8100 6 1 3.5996 1.4103 0.5841 7 6 2.0103 -1.2021 -0.0005 8 1 1.4997 -2.1206 0.2486 9 7 3.3425 -1.2234 -0.3167 10 6 4.2230 -2.2599 0.2376 11 6 4.9809 -2.9401 -0.9084 12 6 5.6903 -1.8705 -1.7383 13 1 6.3628 -1.3024 -1.0956 14 6 4.6524 -0.9275 -2.3462 15 1 3.9414 -1.5056 -2.9365 16 6 5.3585 0.0850 -3.2472 17 6 6.0607 -0.6571 -4.3880 18 6 7.1053 -1.6167 -3.8108 19 7 6.4578 -2.4928 -2.8229 20 6 6.5621 -3.8333 -2.9147 21 8 5.9267 -4.5457 -2.1613 22 6 7.4465 -4.4363 -3.9288 23 6 7.5075 -5.7882 -4.1983 24 16 8.6867 -5.9123 -5.4457 25 7 8.9976 -4.3821 -5.5354 26 7 8.2832 -3.7449 -4.6945 27 6 3.9117 -0.2084 -1.2160 28 1 -0.4850 0.8400 0.0004 29 1 4.9351 -1.8035 0.9252 30 1 3.6248 -3.0001 0.7690 31 1 5.7143 -3.6349 -0.4992 32 1 4.2773 -3.4823 -1.5401 33 1 6.0952 0.6385 -2.6650 34 1 4.6258 0.7781 -3.6605 35 1 6.5521 0.0638 -5.0415 36 1 5.3250 -1.2226 -4.9597 37 1 7.8978 -1.0453 -3.3276 38 1 7.5275 -2.2216 -4.6134 39 1 6.9447 -6.5845 -3.7340 40 1 4.6081 0.4226 -0.6637 41 1 3.1121 0.4042 -1.6325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021643087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:24 Heat of formation + Delta-G solvation = 71.801721 kcal Electronic energy + Delta-G solvation = -26128.094451 eV Core-core repulsion = 22557.618853 eV Total energy + Delta-G solvation = -3570.475599 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.48719 -41.27511 -39.27577 -37.54032 -34.63479 -34.31499 -33.29997 -32.23462 -31.22415 -28.44177 -27.11084 -26.81076 -24.86224 -23.99743 -23.63923 -21.89667 -21.44973 -21.04385 -19.39318 -18.85130 -17.60792 -17.38159 -17.24104 -16.85421 -16.45078 -16.32711 -15.82560 -15.50241 -15.43887 -15.09244 -14.93519 -14.43920 -14.17014 -14.04069 -13.93712 -13.53066 -13.44714 -13.03933 -13.02171 -12.88158 -12.51679 -12.33136 -12.14981 -11.86523 -11.79915 -11.64064 -11.39334 -11.24295 -11.11071 -10.99764 -10.93632 -10.65233 -10.42293 -9.61945 -8.89547 -8.16169 -5.52725 -0.93053 -0.04633 0.29715 0.53211 1.28939 1.41037 1.50197 1.82857 1.99782 2.40923 2.69104 3.05193 3.29711 3.48710 3.64528 3.71746 3.83491 3.89913 4.06681 4.20966 4.27621 4.35182 4.38472 4.45308 4.56634 4.69896 4.72666 4.80086 4.81252 4.93174 4.99902 5.04693 5.14235 5.17401 5.27397 5.38083 5.48703 5.62520 5.85243 6.11274 6.24630 6.45662 6.89646 6.96662 7.59736 7.99253 9.03953 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.003660 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.051760 B = 7647.928370 C = 8300.694315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.041 4.041 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.312 1.312 6 H -0.248 1.248 7 C -0.251 4.251 8 H 0.045 0.955 9 N -0.622 5.622 10 C 0.140 3.860 11 C -0.102 4.102 12 C 0.162 3.838 13 H 0.085 0.915 14 C -0.105 4.105 15 H 0.047 0.953 16 C -0.116 4.116 17 C -0.124 4.124 18 C 0.079 3.921 19 N -0.587 5.587 20 C 0.591 3.409 21 O -0.546 6.546 22 C -0.041 4.041 23 C -0.242 4.242 24 S 0.572 5.428 25 N -0.332 5.332 26 N -0.226 5.226 27 C 0.131 3.869 28 H 0.262 0.738 29 H 0.040 0.960 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.224 0.776 40 H 0.046 0.954 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.742 -9.568 -14.105 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.235 4.235 3 Si 0.784 3.216 4 H -0.200 1.200 5 H -0.242 1.242 6 H -0.172 1.172 7 C -0.380 4.380 8 H 0.063 0.937 9 N -0.347 5.347 10 C 0.015 3.985 11 C -0.141 4.141 12 C 0.059 3.941 13 H 0.103 0.897 14 C -0.126 4.126 15 H 0.066 0.934 16 C -0.154 4.154 17 C -0.162 4.162 18 C -0.043 4.043 19 N -0.318 5.318 20 C 0.376 3.624 21 O -0.424 6.424 22 C -0.188 4.188 23 C -0.398 4.398 24 S 0.707 5.293 25 N -0.312 5.312 26 N -0.095 5.095 27 C 0.006 3.994 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.241 0.759 40 H 0.064 0.936 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 24.643 -9.543 -15.025 30.399 hybrid contribution -1.899 0.832 1.487 2.551 sum 22.744 -8.711 -13.538 27.865 Atomic orbital electron populations 1.69945 1.07547 1.27257 1.56340 1.26021 0.96013 1.01425 0.99992 0.85815 0.79118 0.79212 0.77494 1.20019 1.24180 1.17189 1.18878 0.84701 0.93090 1.41374 0.93708 1.44517 1.05317 1.32426 1.52414 1.21266 0.92360 0.90361 0.94507 1.22248 0.98980 0.96007 0.96877 1.21051 0.91962 0.93865 0.87171 0.89737 1.21828 0.96599 0.97347 0.96870 0.93419 1.21581 0.99808 0.97174 0.96801 1.21879 0.98139 0.98675 0.97525 1.22852 0.94888 0.93604 0.92950 1.48111 1.50379 1.04961 1.28315 1.17189 0.80683 0.82272 0.82278 1.90892 1.45956 1.62221 1.43292 1.22623 1.01907 0.92162 1.02133 1.29249 1.05904 1.00053 1.04602 1.81140 1.19359 1.09197 1.19590 1.78340 1.23578 1.07636 1.21661 1.71493 1.05032 1.29405 1.03540 1.21480 0.95873 0.91499 0.90573 0.92945 0.94227 0.93019 0.89670 0.93561 0.90039 0.91609 0.87762 0.93009 0.89900 0.84685 0.75947 0.93624 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.65 13.97 21.65 0.30 -62.35 16 2 C -0.04 -2.45 5.32 84.86 0.45 -2.00 16 3 Si 0.96 47.22 24.29 68.60 1.67 48.89 16 4 H -0.27 -12.68 6.76 99.48 0.67 -12.01 16 5 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 6 H -0.25 -11.39 5.98 99.48 0.60 -10.79 16 7 C -0.25 -14.97 10.06 84.03 0.85 -14.12 16 8 H 0.05 2.96 8.05 -2.91 -0.02 2.94 16 9 N -0.62 -30.80 2.79 -698.91 -1.95 -32.75 16 10 C 0.14 5.91 6.51 86.42 0.56 6.48 16 11 C -0.10 -3.82 3.80 30.65 0.12 -3.71 16 12 C 0.16 5.28 2.60 44.84 0.12 5.39 16 13 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 14 C -0.11 -3.72 2.20 -10.88 -0.02 -3.74 16 15 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 16 C -0.12 -3.08 5.24 30.58 0.16 -2.92 16 17 C -0.12 -2.71 6.07 30.69 0.19 -2.53 16 18 C 0.08 1.77 6.06 86.32 0.52 2.29 16 19 N -0.59 -16.59 2.98 -800.06 -2.38 -18.97 16 20 C 0.59 17.18 7.61 86.67 0.66 17.84 16 21 O -0.55 -18.74 12.36 -4.06 -0.05 -18.79 16 22 C -0.04 -0.92 6.64 41.36 0.27 -0.64 16 23 C -0.24 -3.55 11.22 67.76 0.76 -2.79 16 24 S 0.57 5.26 23.38 -56.49 -1.32 3.94 16 25 N -0.33 -5.76 12.49 37.02 0.46 -5.29 16 26 N -0.23 -4.76 7.93 -50.34 -0.40 -5.16 16 27 C 0.13 5.61 3.46 86.29 0.30 5.91 16 28 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 29 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 2.27 7.92 -2.39 -0.02 2.25 16 31 H 0.09 3.05 6.49 -2.39 -0.02 3.04 16 32 H 0.05 1.99 7.11 -2.39 -0.02 1.98 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.14 2.95 4.07 -61.34 -0.25 2.70 16 39 H 0.22 2.46 8.06 -2.91 -0.02 2.44 16 40 H 0.05 1.84 6.69 -2.39 -0.02 1.82 16 41 H 0.05 2.41 4.35 -2.39 -0.01 2.40 16 Total: -1.00 -75.79 323.01 1.93 -73.85 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.67 Total: 11.18 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.93 Total: 5.46 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -3.97 Total: -124.53 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.05 Total: -18.79 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.67 Total: 48.89 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.32 Total: 3.94 kcal Total: -75.79 1.93 -73.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021643087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.655 kcal (2) G-P(sol) polarization free energy of solvation -75.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds