Wall clock time and date at job start Fri Apr 10 2020 14:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47583 * 275.04924 * 3 2 1 5 5 H 1.48505 * 109.47112 * 35.04849 * 3 2 1 6 6 H 1.48500 * 109.46969 * 155.04568 * 3 2 1 7 7 C 1.38817 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00143 * 340.30932 * 7 2 1 9 9 N 1.36936 * 119.99858 * 160.32062 * 7 2 1 10 10 C 1.47011 * 120.66468 * 153.60292 * 9 7 2 11 11 C 1.53194 * 108.84979 * 125.97197 * 10 9 7 12 12 C 1.53126 * 109.32115 * 55.05046 * 11 10 9 13 13 C 1.52492 * 109.60166 * 299.47056 * 12 11 10 14 14 C 1.54156 * 110.05887 * 181.75223 * 13 12 11 15 15 C 1.55041 * 102.73551 * 97.48452 * 14 13 12 16 16 N 1.48161 * 103.31829 * 36.98582 * 15 14 13 17 17 C 1.34777 * 127.03019 * 140.99452 * 16 15 14 18 18 O 1.21624 * 119.99537 * 354.66316 * 17 16 15 19 19 C 1.47165 * 119.99995 * 174.66079 * 17 16 15 20 20 C 1.38246 * 128.47235 * 173.92708 * 19 17 16 21 21 N 1.31248 * 111.88682 * 179.84974 * 20 19 17 22 22 N 1.27327 * 120.03737 * 0.48478 * 21 20 19 23 23 S 1.56636 * 109.74420 * 359.72240 * 22 21 20 24 24 C 1.47615 * 105.94432 * 320.97952 * 16 15 14 25 25 C 1.47031 * 120.67968 * 333.57344 * 9 7 2 26 26 H 0.96999 * 119.99840 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.61474 * 6.14391 * 10 9 7 28 28 H 1.08994 * 109.56393 * 245.76319 * 10 9 7 29 29 H 1.09008 * 109.49985 * 295.08658 * 11 10 9 30 30 H 1.08996 * 109.50059 * 175.02123 * 11 10 9 31 31 H 1.09000 * 109.44817 * 59.51415 * 12 11 10 32 32 H 1.09004 * 109.44752 * 179.45483 * 12 11 10 33 33 H 1.09003 * 110.75695 * 215.79366 * 14 13 12 34 34 H 1.09000 * 110.75970 * 339.16961 * 14 13 12 35 35 H 1.09006 * 110.65163 * 278.53293 * 15 14 13 36 36 H 1.09003 * 110.79329 * 155.51176 * 15 14 13 37 37 H 1.07992 * 124.05984 * 359.97438 * 20 19 17 38 38 H 1.09007 * 109.96973 * 266.00561 * 24 16 15 39 39 H 1.08996 * 109.97462 * 144.73443 * 24 16 15 40 40 H 1.09003 * 109.58030 * 113.03726 * 25 9 7 41 41 H 1.09001 * 109.70339 * 352.68884 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3911 2.1080 -1.3946 5 1 1.5051 2.6195 0.8040 6 1 3.5970 1.4116 0.5907 7 6 2.0102 -1.2022 -0.0005 8 1 1.5176 -2.1103 0.3142 9 7 3.3196 -1.2367 -0.3999 10 6 4.2291 -2.2774 0.1010 11 6 4.8763 -2.9858 -1.0932 12 6 5.5564 -1.9479 -1.9903 13 6 4.5179 -0.9559 -2.5031 14 6 5.1841 0.0684 -3.4430 15 6 4.8815 -0.5105 -4.8490 16 7 3.5155 -1.0654 -4.7029 17 6 2.5200 -1.0209 -5.6103 18 8 2.6671 -0.3975 -6.6442 19 6 1.2551 -1.7265 -5.3501 20 6 0.0900 -1.7061 -6.0940 21 7 -0.8428 -2.4616 -5.5632 22 7 -0.6124 -3.0936 -4.4821 23 16 0.8502 -2.8047 -4.0016 24 6 3.4679 -1.6774 -3.3604 25 6 3.8442 -0.2342 -1.3388 26 1 -0.4850 0.8400 0.0004 27 1 3.6677 -2.9997 0.6936 28 1 5.0031 -1.8200 0.7173 29 1 4.1104 -3.5128 -1.6624 30 1 5.6183 -3.6991 -0.7347 31 1 6.3156 -1.4151 -1.4177 32 1 6.0259 -2.4508 -2.8357 33 1 4.7311 1.0528 -3.3248 34 1 6.2588 0.1129 -3.2665 35 1 5.5914 -1.2983 -5.1013 36 1 4.8982 0.2763 -5.6033 37 1 -0.0367 -1.1384 -7.0039 38 1 3.7067 -2.7389 -3.4265 39 1 2.4772 -1.5447 -2.9257 40 1 4.5725 0.3972 -0.8298 41 1 3.0265 0.3810 -1.7143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040095039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:26 Heat of formation + Delta-G solvation = 74.651628 kcal Electronic energy + Delta-G solvation = -26548.351693 eV Core-core repulsion = 22977.999675 eV Total energy + Delta-G solvation = -3570.352018 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67962 -40.33175 -38.55085 -36.05730 -33.26821 -32.30653 -31.51689 -30.83485 -29.44698 -27.46255 -25.95042 -25.49058 -23.83999 -22.73341 -22.07484 -20.40671 -19.84540 -18.96750 -18.68206 -17.03161 -16.84121 -16.17803 -16.06956 -15.42236 -15.23646 -14.63968 -14.44217 -14.18482 -13.92266 -13.73287 -13.43803 -13.14123 -12.73750 -12.58754 -12.36798 -12.26485 -12.03154 -11.78426 -11.67012 -11.48582 -11.24147 -11.09784 -10.68995 -10.52805 -10.32193 -10.13774 -9.95508 -9.91124 -9.87838 -9.77328 -9.55166 -9.50036 -8.75894 -8.72252 -7.11600 -6.05839 -3.42886 -0.07637 1.02069 1.70760 2.11301 2.80216 3.02088 3.21219 3.38531 3.40796 4.13515 4.38574 4.41774 4.54198 4.77352 4.84224 4.86567 4.97181 5.18699 5.25688 5.29538 5.39210 5.49127 5.61141 5.66133 5.68941 5.76307 5.80631 5.96665 6.03617 6.04360 6.14889 6.18010 6.27245 6.38520 6.43690 6.52754 6.60115 6.78577 7.38377 7.81831 7.82059 7.96943 8.21135 8.81132 9.59695 9.96626 11.09178 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.006848 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.033959 B = 4088.091934 C = 4973.682467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.025 3.975 3 Si 0.873 3.127 4 H -0.290 1.290 5 H -0.302 1.302 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.090 0.910 9 N -0.605 5.605 10 C 0.147 3.853 11 C -0.141 4.141 12 C -0.096 4.096 13 C -0.082 4.082 14 C -0.130 4.130 15 C 0.111 3.889 16 N -0.615 5.615 17 C 0.624 3.376 18 O -0.531 6.531 19 C -0.307 4.307 20 C 0.070 3.930 21 N -0.263 5.263 22 N -0.273 5.273 23 S 0.488 5.512 24 C 0.101 3.899 25 C 0.138 3.862 26 H 0.263 0.737 27 H 0.064 0.936 28 H 0.023 0.977 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.211 0.789 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.033 0.967 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.332 -4.870 -7.848 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.174 4.174 3 Si 0.704 3.296 4 H -0.218 1.218 5 H -0.231 1.231 6 H -0.192 1.192 7 C -0.390 4.390 8 H 0.107 0.893 9 N -0.329 5.329 10 C 0.021 3.979 11 C -0.180 4.180 12 C -0.134 4.134 13 C -0.085 4.085 14 C -0.168 4.168 15 C -0.011 4.011 16 N -0.348 5.348 17 C 0.411 3.589 18 O -0.409 6.409 19 C -0.448 4.448 20 C -0.099 4.099 21 N -0.126 5.126 22 N -0.254 5.254 23 S 0.625 5.375 24 C -0.023 4.023 25 C 0.012 3.988 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.227 0.773 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.219 -5.710 -7.160 13.722 hybrid contribution 0.715 2.104 -0.950 2.417 sum 10.934 -3.605 -8.110 14.083 Atomic orbital electron populations 1.69805 1.05601 1.26610 1.52597 1.25268 0.95198 0.97378 0.99570 0.87114 0.80367 0.85186 0.76953 1.21816 1.23073 1.19200 1.18921 0.84301 0.94729 1.41073 0.89272 1.44421 1.08401 1.31248 1.48806 1.20960 0.92583 0.91125 0.93221 1.22095 0.99566 0.97567 0.98753 1.21414 0.96615 0.96490 0.98835 1.21597 0.94944 0.95879 0.96036 1.22818 1.01294 0.99268 0.93448 1.22505 0.81756 0.98496 0.98360 1.48716 1.12543 1.57216 1.16348 1.15984 0.80447 0.79702 0.82769 1.90806 1.80725 1.43076 1.26315 1.27938 1.01532 1.11615 1.03677 1.24358 0.86418 0.97462 1.01629 1.70772 1.29119 1.08367 1.04295 1.78626 1.15508 1.21375 1.09911 1.83293 1.07392 1.27221 1.19609 1.22552 1.02159 0.97007 0.80570 1.21385 0.96866 0.91646 0.88885 0.92675 0.91728 0.95874 0.91826 0.92326 0.91759 0.92585 0.90562 0.89586 0.90612 0.89605 0.77290 0.90670 0.88612 0.94894 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.97 55.49 0.78 -25.51 16 2 C 0.03 0.68 5.26 -17.43 -0.09 0.59 16 3 Si 0.87 21.19 24.32 -169.99 -4.13 17.06 16 4 H -0.29 -6.91 6.70 56.52 0.38 -6.53 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.25 6.33 56.52 0.36 -5.89 16 7 C -0.26 -6.55 10.06 -15.06 -0.15 -6.70 16 8 H 0.09 2.39 8.05 -52.49 -0.42 1.97 16 9 N -0.61 -12.43 2.56 -172.49 -0.44 -12.87 16 10 C 0.15 2.44 6.50 -3.66 -0.02 2.42 16 11 C -0.14 -1.82 5.87 -26.57 -0.16 -1.98 16 12 C -0.10 -1.15 4.40 -26.93 -0.12 -1.27 16 13 C -0.08 -1.18 0.62 -154.05 -0.09 -1.28 16 14 C -0.13 -1.59 6.15 -25.05 -0.15 -1.74 16 15 C 0.11 1.34 7.11 -2.05 -0.01 1.32 16 16 N -0.61 -9.13 3.30 -171.19 -0.56 -9.69 16 17 C 0.62 10.25 7.87 -12.64 -0.10 10.15 16 18 O -0.53 -9.67 17.18 5.26 0.09 -9.58 16 19 C -0.31 -4.87 6.64 -35.96 -0.24 -5.11 16 20 C 0.07 1.06 11.56 -17.80 -0.21 0.85 16 21 N -0.26 -4.46 11.54 30.36 0.35 -4.11 16 22 N -0.27 -4.83 12.51 60.35 0.75 -4.07 16 23 S 0.49 7.78 19.98 -107.50 -2.15 5.63 16 24 C 0.10 1.50 4.17 -3.14 -0.01 1.49 16 25 C 0.14 2.62 2.48 -3.93 -0.01 2.62 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.84 6.65 -51.92 -0.35 0.50 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.04 7.84 -51.93 -0.41 0.63 16 34 H 0.09 0.83 7.83 -51.93 -0.41 0.42 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.05 7.81 -51.93 -0.41 0.64 16 37 H 0.21 2.54 8.06 -52.49 -0.42 2.11 16 38 H 0.08 0.98 6.54 -51.92 -0.34 0.64 16 39 H 0.10 1.72 5.34 -47.70 -0.25 1.46 16 40 H 0.03 0.63 6.89 -51.93 -0.36 0.28 16 41 H 0.07 1.57 4.42 -51.93 -0.23 1.34 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -30.73 330.57 -7.03 -37.76 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -5.32 Total: -0.95 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -1.37 Total: 1.36 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.87 Total: -56.25 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.13 Total: 17.06 kcal Atomic # 16 Polarization: 7.78 SS G_CDS: -2.15 Total: 5.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.73 -7.03 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040095039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.410 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds