Wall clock time and date at job start Fri Apr 10 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47583 * 275.04924 * 3 2 1 5 5 H 1.48505 * 109.47112 * 35.04849 * 3 2 1 6 6 H 1.48500 * 109.46969 * 155.04568 * 3 2 1 7 7 C 1.38817 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00143 * 340.30932 * 7 2 1 9 9 N 1.36936 * 119.99858 * 160.32062 * 7 2 1 10 10 C 1.47011 * 120.66468 * 153.60292 * 9 7 2 11 11 C 1.53194 * 108.84979 * 125.97197 * 10 9 7 12 12 C 1.53126 * 109.32115 * 55.05046 * 11 10 9 13 13 C 1.52492 * 109.60166 * 299.47056 * 12 11 10 14 14 C 1.54156 * 110.05887 * 181.75223 * 13 12 11 15 15 C 1.55041 * 102.73551 * 97.48452 * 14 13 12 16 16 N 1.48161 * 103.31829 * 36.98582 * 15 14 13 17 17 C 1.34777 * 127.03019 * 140.99452 * 16 15 14 18 18 O 1.21624 * 119.99537 * 354.66316 * 17 16 15 19 19 C 1.47165 * 119.99995 * 174.66079 * 17 16 15 20 20 C 1.38246 * 128.47235 * 173.92708 * 19 17 16 21 21 N 1.31248 * 111.88682 * 179.84974 * 20 19 17 22 22 N 1.27327 * 120.03737 * 0.48478 * 21 20 19 23 23 S 1.56636 * 109.74420 * 359.72240 * 22 21 20 24 24 C 1.47615 * 105.94432 * 320.97952 * 16 15 14 25 25 C 1.47031 * 120.67968 * 333.57344 * 9 7 2 26 26 H 0.96999 * 119.99840 * 359.97438 * 1 2 3 27 27 H 1.09003 * 109.61474 * 6.14391 * 10 9 7 28 28 H 1.08994 * 109.56393 * 245.76319 * 10 9 7 29 29 H 1.09008 * 109.49985 * 295.08658 * 11 10 9 30 30 H 1.08996 * 109.50059 * 175.02123 * 11 10 9 31 31 H 1.09000 * 109.44817 * 59.51415 * 12 11 10 32 32 H 1.09004 * 109.44752 * 179.45483 * 12 11 10 33 33 H 1.09003 * 110.75695 * 215.79366 * 14 13 12 34 34 H 1.09000 * 110.75970 * 339.16961 * 14 13 12 35 35 H 1.09006 * 110.65163 * 278.53293 * 15 14 13 36 36 H 1.09003 * 110.79329 * 155.51176 * 15 14 13 37 37 H 1.07992 * 124.05984 * 359.97438 * 20 19 17 38 38 H 1.09007 * 109.96973 * 266.00561 * 24 16 15 39 39 H 1.08996 * 109.97462 * 144.73443 * 24 16 15 40 40 H 1.09003 * 109.58030 * 113.03726 * 25 9 7 41 41 H 1.09001 * 109.70339 * 352.68884 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3911 2.1080 -1.3946 5 1 1.5051 2.6195 0.8040 6 1 3.5970 1.4116 0.5907 7 6 2.0102 -1.2022 -0.0005 8 1 1.5176 -2.1103 0.3142 9 7 3.3196 -1.2367 -0.3999 10 6 4.2291 -2.2774 0.1010 11 6 4.8763 -2.9858 -1.0932 12 6 5.5564 -1.9479 -1.9903 13 6 4.5179 -0.9559 -2.5031 14 6 5.1841 0.0684 -3.4430 15 6 4.8815 -0.5105 -4.8490 16 7 3.5155 -1.0654 -4.7029 17 6 2.5200 -1.0209 -5.6103 18 8 2.6671 -0.3975 -6.6442 19 6 1.2551 -1.7265 -5.3501 20 6 0.0900 -1.7061 -6.0940 21 7 -0.8428 -2.4616 -5.5632 22 7 -0.6124 -3.0936 -4.4821 23 16 0.8502 -2.8047 -4.0016 24 6 3.4679 -1.6774 -3.3604 25 6 3.8442 -0.2342 -1.3388 26 1 -0.4850 0.8400 0.0004 27 1 3.6677 -2.9997 0.6936 28 1 5.0031 -1.8200 0.7173 29 1 4.1104 -3.5128 -1.6624 30 1 5.6183 -3.6991 -0.7347 31 1 6.3156 -1.4151 -1.4177 32 1 6.0259 -2.4508 -2.8357 33 1 4.7311 1.0528 -3.3248 34 1 6.2588 0.1129 -3.2665 35 1 5.5914 -1.2983 -5.1013 36 1 4.8982 0.2763 -5.6033 37 1 -0.0367 -1.1384 -7.0039 38 1 3.7067 -2.7389 -3.4265 39 1 2.4772 -1.5447 -2.9257 40 1 4.5725 0.3972 -0.8298 41 1 3.0265 0.3810 -1.7143 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040095039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:25 Heat of formation + Delta-G solvation = 53.479208 kcal Electronic energy + Delta-G solvation = -26549.269798 eV Core-core repulsion = 22977.999675 eV Total energy + Delta-G solvation = -3571.270123 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93198 -41.54119 -39.84550 -37.42292 -34.85265 -33.60915 -32.87981 -32.37936 -30.57741 -28.72240 -27.35801 -26.99648 -25.02324 -24.17399 -23.30463 -21.69568 -21.06580 -20.20261 -19.97746 -18.60049 -18.24524 -17.48199 -17.32912 -16.90568 -16.57594 -15.96080 -15.78577 -15.47761 -15.32498 -15.10572 -14.72641 -14.55797 -14.11251 -13.82927 -13.81113 -13.54226 -13.31202 -13.10938 -12.90944 -12.85602 -12.64484 -12.40246 -12.06154 -11.95159 -11.72635 -11.56428 -11.39226 -11.25011 -11.21749 -11.08474 -11.03143 -10.79538 -10.62796 -9.88465 -8.87523 -8.13842 -5.42872 -1.35993 -0.23307 0.42491 0.85044 1.24878 1.37652 1.44052 1.62652 1.78830 2.40334 2.91215 3.07806 3.23123 3.36701 3.52763 3.63004 3.75855 3.81941 4.20910 4.26951 4.30085 4.43044 4.46993 4.52191 4.61262 4.71830 4.75665 4.78014 4.82864 4.96289 5.00149 5.07124 5.19790 5.24331 5.26844 5.37618 5.48014 5.66357 5.90511 6.16520 6.17873 6.54549 6.73714 6.95559 7.67508 8.07302 9.05003 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011157 B = 0.006848 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.033959 B = 4088.091934 C = 4973.682467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.927 3.073 4 H -0.289 1.289 5 H -0.322 1.322 6 H -0.250 1.250 7 C -0.226 4.226 8 H 0.062 0.938 9 N -0.617 5.617 10 C 0.139 3.861 11 C -0.134 4.134 12 C -0.090 4.090 13 C -0.077 4.077 14 C -0.123 4.123 15 C 0.109 3.891 16 N -0.614 5.614 17 C 0.621 3.379 18 O -0.553 6.553 19 C -0.312 4.312 20 C 0.073 3.927 21 N -0.277 5.277 22 N -0.304 5.304 23 S 0.504 5.496 24 C 0.100 3.900 25 C 0.136 3.864 26 H 0.255 0.745 27 H 0.053 0.947 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.237 0.763 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.037 0.963 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.424 -5.579 -8.839 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.228 4.228 3 Si 0.758 3.242 4 H -0.217 1.217 5 H -0.252 1.252 6 H -0.174 1.174 7 C -0.356 4.356 8 H 0.079 0.921 9 N -0.341 5.341 10 C 0.015 3.985 11 C -0.172 4.172 12 C -0.128 4.128 13 C -0.080 4.080 14 C -0.161 4.161 15 C -0.012 4.012 16 N -0.347 5.347 17 C 0.408 3.592 18 O -0.433 6.433 19 C -0.453 4.453 20 C -0.095 4.095 21 N -0.139 5.139 22 N -0.284 5.284 23 S 0.640 5.360 24 C -0.023 4.023 25 C 0.010 3.990 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.253 0.747 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.395 -6.445 -8.142 17.749 hybrid contribution -0.495 2.248 -0.586 2.375 sum 13.900 -4.197 -8.727 16.941 Atomic orbital electron populations 1.69943 1.07198 1.26498 1.56628 1.25759 0.95564 1.00131 1.01360 0.86245 0.79651 0.81748 0.76587 1.21688 1.25198 1.17357 1.18854 0.86132 0.93148 1.37491 0.92063 1.44552 1.07408 1.32490 1.49660 1.21195 0.92051 0.90084 0.95209 1.22020 1.00075 0.98031 0.97098 1.21450 0.95747 0.95599 0.99972 1.21517 0.95299 0.96816 0.94363 1.22838 1.03201 0.97425 0.92683 1.22789 0.80633 0.99565 0.98169 1.48834 1.13360 1.56673 1.15798 1.16019 0.80705 0.79616 0.82866 1.90790 1.81126 1.44177 1.27247 1.28077 1.01935 1.11719 1.03598 1.24792 0.85758 0.96854 1.02130 1.70775 1.29967 1.08861 1.04327 1.78534 1.16794 1.22504 1.10615 1.83149 1.06589 1.26936 1.19331 1.22568 1.00686 0.98497 0.80586 1.21356 0.95923 0.91468 0.90220 0.93589 0.92802 0.94778 0.92304 0.89056 0.90293 0.88992 0.92534 0.85748 0.87085 0.89802 0.74653 0.88284 0.92058 0.94527 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.31 13.97 21.65 0.30 -58.00 16 2 C -0.03 -1.87 5.26 84.86 0.45 -1.42 16 3 Si 0.93 44.94 24.32 68.60 1.67 46.61 16 4 H -0.29 -13.72 6.70 99.48 0.67 -13.06 16 5 H -0.32 -16.48 7.11 99.48 0.71 -15.77 16 6 H -0.25 -11.17 6.33 99.48 0.63 -10.54 16 7 C -0.23 -11.52 10.06 84.03 0.85 -10.68 16 8 H 0.06 3.42 8.05 -2.91 -0.02 3.39 16 9 N -0.62 -24.61 2.56 -699.64 -1.79 -26.40 16 10 C 0.14 4.25 6.50 86.35 0.56 4.82 16 11 C -0.13 -2.84 5.87 30.70 0.18 -2.66 16 12 C -0.09 -1.64 4.40 30.47 0.13 -1.51 16 13 C -0.08 -1.95 0.62 -51.88 -0.03 -1.98 16 14 C -0.12 -2.49 6.15 31.68 0.19 -2.29 16 15 C 0.11 2.18 7.11 86.76 0.62 2.80 16 16 N -0.61 -16.75 3.30 -813.76 -2.68 -19.43 16 17 C 0.62 19.60 7.87 86.59 0.68 20.28 16 18 O -0.55 -19.43 17.18 -4.11 -0.07 -19.50 16 19 C -0.31 -9.78 6.64 24.62 0.16 -9.61 16 20 C 0.07 2.19 11.56 84.78 0.98 3.17 16 21 N -0.28 -9.50 11.54 -57.87 -0.67 -10.17 16 22 N -0.30 -10.97 12.51 37.02 0.46 -10.51 16 23 S 0.50 16.18 19.98 -56.49 -1.13 15.05 16 24 C 0.10 2.74 4.17 86.36 0.36 3.10 16 25 C 0.14 4.89 2.48 86.16 0.21 5.10 16 26 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 27 H 0.05 1.74 7.93 -2.39 -0.02 1.72 16 28 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.33 6.65 -2.38 -0.02 1.31 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 1.39 7.84 -2.39 -0.02 1.37 16 34 H 0.12 1.61 7.83 -2.39 -0.02 1.59 16 35 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.08 1.76 7.81 -2.39 -0.02 1.75 16 37 H 0.24 5.48 8.06 -2.91 -0.02 5.46 16 38 H 0.10 2.24 6.54 -2.38 -0.02 2.23 16 39 H 0.06 2.17 5.34 -5.08 -0.03 2.14 16 40 H 0.04 1.30 6.89 -2.39 -0.02 1.29 16 41 H 0.04 1.58 4.42 -2.39 -0.01 1.57 16 Total: -1.00 -70.41 330.57 2.37 -68.04 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: 0.93 Total: 5.20 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.35 Total: 9.11 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -4.38 Total: -124.51 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.07 Total: -19.50 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.67 Total: 46.61 kcal Atomic # 16 Polarization: 16.18 SS G_CDS: -1.13 Total: 15.05 kcal Total: -70.41 2.37 -68.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040095039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.517 kcal (2) G-P(sol) polarization free energy of solvation -70.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds