Wall clock time and date at job start Fri Apr 10 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00051 * 2 1 4 4 H 1.48503 * 109.47125 * 269.99807 * 3 2 1 5 5 H 1.48507 * 109.47195 * 29.99800 * 3 2 1 6 6 H 1.48495 * 109.47108 * 149.99697 * 3 2 1 7 7 C 1.38803 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00111 * 359.97438 * 7 2 1 9 9 N 1.36930 * 120.00297 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00287 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47290 * 179.97438 * 10 9 7 12 12 C 1.54167 * 111.82371 * 298.98779 * 11 10 9 13 13 C 1.54843 * 104.32378 * 261.24250 * 12 11 10 14 14 C 1.54834 * 102.73941 * 321.81367 * 13 12 11 15 15 C 1.54167 * 104.32646 * 38.18515 * 14 13 12 16 16 H 1.08998 * 111.82064 * 98.75670 * 15 14 13 17 17 C 1.54334 * 108.85838 * 223.79170 * 15 14 13 18 18 N 1.48118 * 104.68895 * 137.44843 * 17 15 14 19 19 C 1.34781 * 127.84293 * 140.22555 * 18 17 15 20 20 O 1.21604 * 120.00244 * 180.02562 * 19 18 17 21 21 C 1.47444 * 119.99496 * 0.02562 * 19 18 17 22 22 C 1.37986 * 124.15404 * 179.97438 * 21 19 18 23 23 S 1.72096 * 104.03505 * 179.97438 * 22 21 19 24 24 N 1.56409 * 96.15609 * 0.02562 * 23 22 21 25 25 N 1.27418 * 109.86970 * 359.74683 * 24 23 22 26 26 C 1.48122 * 104.31618 * 320.25809 * 18 17 15 27 27 H 0.97003 * 119.99897 * 0.02562 * 1 2 3 28 28 H 0.97001 * 120.00479 * 0.02562 * 9 7 2 29 29 H 1.09002 * 109.47158 * 59.99961 * 10 9 7 30 30 H 1.09000 * 109.47178 * 299.99974 * 10 9 7 31 31 H 1.09004 * 110.45695 * 19.95393 * 12 11 10 32 32 H 1.08994 * 110.46094 * 142.52846 * 12 11 10 33 33 H 1.09007 * 110.75867 * 80.12693 * 13 12 11 34 34 H 1.08995 * 110.75391 * 203.49675 * 13 12 11 35 35 H 1.08998 * 110.46451 * 156.89768 * 14 13 12 36 36 H 1.09002 * 110.46113 * 279.34934 * 14 13 12 37 37 H 1.08997 * 110.39306 * 256.24968 * 17 15 14 38 38 H 1.08995 * 110.38933 * 18.53323 * 17 15 14 39 39 H 1.08004 * 127.97902 * 0.02562 * 22 21 19 40 40 H 1.08999 * 110.39070 * 280.93929 * 26 18 17 41 41 H 1.09001 * 110.38834 * 158.55142 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 7 3.3795 -1.2021 0.0011 10 6 4.1120 -2.4709 0.0011 11 6 5.6163 -2.1914 0.0011 12 6 6.0531 -1.4048 -1.2508 13 6 6.6146 -2.4862 -2.2062 14 6 7.3511 -3.4462 -1.2401 15 6 6.4476 -3.4986 0.0080 16 1 5.8127 -4.3846 0.0115 17 6 7.3320 -3.3979 1.2687 18 7 6.6044 -2.4696 2.1647 19 6 6.4556 -2.5572 3.5014 20 8 5.8234 -1.7081 4.0998 21 6 7.0596 -3.6825 4.2382 22 6 6.9618 -3.8560 5.6036 23 16 7.8382 -5.3064 5.9039 24 7 8.2358 -5.5733 4.4149 25 7 7.7605 -4.6564 3.6686 26 6 6.0767 -1.4238 1.2583 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3621 0.0014 29 1 3.8491 -3.0423 -0.8892 30 1 3.8484 -3.0427 0.8908 31 1 5.1975 -0.9034 -1.7034 32 1 6.8281 -0.6822 -0.9956 33 1 5.8057 -3.0033 -2.7225 34 1 7.3113 -2.0469 -2.9200 35 1 7.4444 -4.4369 -1.6849 36 1 8.3339 -3.0499 -0.9849 37 1 7.4363 -4.3758 1.7386 38 1 8.3115 -2.9932 1.0141 39 1 6.4521 -3.2273 6.3187 40 1 6.8614 -0.7117 1.0025 41 1 5.2332 -0.9110 1.7204 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112498277.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:26 Heat of formation + Delta-G solvation = 40.309642 kcal Electronic energy + Delta-G solvation = -25567.487283 eV Core-core repulsion = 21995.646086 eV Total energy + Delta-G solvation = -3571.841198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.33511 -41.38947 -39.69262 -36.68726 -35.80256 -33.71700 -33.25296 -31.39360 -30.65107 -28.55316 -27.53636 -26.56722 -25.46361 -24.20248 -23.06731 -21.56782 -21.33532 -20.28267 -19.79532 -19.12173 -17.57459 -17.35791 -17.26186 -16.64299 -16.53176 -16.42104 -16.21983 -15.67551 -15.29777 -15.04525 -14.63893 -14.53392 -14.31000 -13.83659 -13.61278 -13.51570 -13.21662 -13.07849 -12.95590 -12.72682 -12.27461 -12.12082 -11.93351 -11.89652 -11.78582 -11.59755 -11.47954 -11.40706 -11.26040 -11.20489 -11.04338 -10.99063 -10.90402 -9.88395 -9.32964 -8.06333 -5.39443 -0.97708 -0.09878 0.26153 0.50250 1.33073 1.37704 1.44069 1.75370 1.93788 2.44781 2.64503 3.22295 3.26509 3.41144 3.58274 3.59301 3.71110 3.89766 4.12630 4.21308 4.28570 4.29582 4.40160 4.43910 4.53010 4.67481 4.77595 4.83928 4.85597 4.96506 5.02397 5.06832 5.18967 5.22116 5.29584 5.40619 5.43167 5.56891 5.70990 6.17492 6.27368 6.41062 6.83514 7.04026 7.79270 7.99796 9.15591 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.004043 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.581982 B = 6924.739706 C = 8197.665137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.060 4.060 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.257 1.257 7 C -0.236 4.236 8 H 0.052 0.948 9 N -0.751 5.751 10 C 0.181 3.819 11 C -0.075 4.075 12 C -0.117 4.117 13 C -0.116 4.116 14 C -0.103 4.103 15 C -0.092 4.092 16 H 0.084 0.916 17 C 0.100 3.900 18 N -0.603 5.603 19 C 0.609 3.391 20 O -0.569 6.569 21 C -0.039 4.039 22 C -0.244 4.244 23 S 0.577 5.423 24 N -0.328 5.328 25 N -0.224 5.224 26 C 0.112 3.888 27 H 0.259 0.741 28 H 0.366 0.634 29 H 0.032 0.968 30 H 0.001 0.999 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.098 0.902 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.589 -11.494 7.587 29.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.251 4.251 3 Si 0.777 3.223 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.182 1.182 7 C -0.367 4.367 8 H 0.070 0.930 9 N -0.397 5.397 10 C 0.054 3.946 11 C -0.077 4.077 12 C -0.155 4.155 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.112 4.112 16 H 0.102 0.898 17 C -0.021 4.021 18 N -0.334 5.334 19 C 0.394 3.606 20 O -0.448 6.448 21 C -0.186 4.186 22 C -0.401 4.401 23 S 0.713 5.287 24 N -0.308 5.308 25 N -0.093 5.093 26 C -0.011 4.011 27 H 0.067 0.933 28 H 0.200 0.800 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.239 0.761 40 H 0.116 0.884 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 26.100 -12.769 7.863 30.101 hybrid contribution -1.614 2.580 -0.011 3.043 sum 24.486 -10.189 7.852 27.659 Atomic orbital electron populations 1.69883 1.07109 1.26720 1.59675 1.25466 0.96098 1.01136 1.02449 0.85473 0.78555 0.79710 0.78528 1.19348 1.22157 1.18227 1.19010 0.82780 0.93403 1.41488 0.92958 1.42662 1.02360 1.03963 1.90721 1.20552 0.89597 0.87269 0.97150 1.22235 0.93709 0.96739 0.94995 1.22515 1.00613 0.98219 0.94112 1.22462 0.99673 0.95905 0.97289 1.22412 0.98001 1.00661 0.92990 1.22751 0.96262 0.96249 0.95941 0.89756 1.23174 0.94859 0.95470 0.88608 1.48865 1.52059 1.27564 1.04885 1.16681 0.79477 0.83607 0.80803 1.90844 1.43293 1.42328 1.68302 1.22337 1.04914 0.98493 0.92883 1.29260 1.05684 1.06365 0.98771 1.81095 1.28495 1.07400 1.11758 1.78321 1.24561 1.22712 1.05239 1.71617 1.09524 0.99246 1.28932 1.22687 0.98824 0.90514 0.89030 0.93263 0.79970 0.95047 0.98057 0.92765 0.89604 0.92283 0.89432 0.89777 0.89277 0.87231 0.88476 0.76095 0.88409 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.27 13.97 21.65 0.30 -64.97 16 2 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 3 Si 0.95 47.38 27.74 68.60 1.90 49.28 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 6 H -0.26 -11.88 6.52 99.48 0.65 -11.24 16 7 C -0.24 -14.20 10.47 84.03 0.88 -13.32 16 8 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 9 N -0.75 -37.03 4.44 -343.44 -1.52 -38.55 16 10 C 0.18 7.36 5.22 86.38 0.45 7.81 16 11 C -0.08 -2.25 0.62 -50.68 -0.03 -2.28 16 12 C -0.12 -2.99 5.69 31.62 0.18 -2.81 16 13 C -0.12 -2.26 6.90 31.85 0.22 -2.04 16 14 C -0.10 -1.69 6.36 31.62 0.20 -1.48 16 15 C -0.09 -2.11 3.57 -9.29 -0.03 -2.14 16 16 H 0.08 2.06 7.88 -2.39 -0.02 2.04 16 17 C 0.10 2.25 6.18 86.52 0.53 2.78 16 18 N -0.60 -18.04 3.31 -812.16 -2.69 -20.73 16 19 C 0.61 19.96 7.91 86.67 0.69 20.64 16 20 O -0.57 -22.95 17.06 -4.04 -0.07 -23.02 16 21 C -0.04 -0.98 6.79 41.36 0.28 -0.69 16 22 C -0.24 -4.23 11.21 67.76 0.76 -3.47 16 23 S 0.58 6.30 23.38 -56.49 -1.32 4.98 16 24 N -0.33 -6.23 12.49 37.02 0.46 -5.77 16 25 N -0.22 -5.19 8.49 -50.35 -0.43 -5.62 16 26 C 0.11 3.56 5.96 86.52 0.52 4.07 16 27 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 28 H 0.37 17.21 4.54 -92.71 -0.42 16.79 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.05 1.69 7.16 -2.39 -0.02 1.68 16 32 H 0.09 1.84 7.18 -2.39 -0.02 1.82 16 33 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.14 7.18 -2.39 -0.02 1.13 16 37 H 0.11 2.49 5.36 -2.39 -0.01 2.48 16 38 H 0.10 1.73 7.18 -2.39 -0.02 1.72 16 39 H 0.22 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.10 2.59 7.18 -2.39 -0.02 2.57 16 41 H 0.05 2.15 7.02 -2.39 -0.02 2.13 16 Total: -1.00 -80.82 339.79 2.34 -78.48 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.59 Total: 22.08 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 5.11 Total: 3.84 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -3.88 Total: -135.64 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.07 Total: -23.02 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.90 Total: 49.28 kcal Atomic # 16 Polarization: 6.30 SS G_CDS: -1.32 Total: 4.98 kcal Total: -80.82 2.34 -78.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112498277.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.790 kcal (2) G-P(sol) polarization free energy of solvation -80.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds