Wall clock time and date at job start Fri Apr 10 2020 14:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39943 * 126.05903 * 2 1 4 4 C 1.31422 * 108.37279 * 180.37267 * 3 2 1 5 5 C 1.39521 * 107.81579 * 359.62463 * 4 3 2 6 6 C 1.34864 * 126.06270 * 179.82594 * 2 1 3 7 7 C 1.50701 * 126.15858 * 359.96272 * 6 2 1 8 8 N 1.46900 * 109.47460 * 89.69071 * 7 6 2 9 9 C 1.46891 * 111.00538 * 189.99759 * 8 7 6 10 10 C 1.53236 * 109.34490 * 187.25409 * 9 8 7 11 11 N 1.47086 * 108.51747 * 306.17144 * 10 9 8 12 12 C 1.36936 * 120.87786 * 231.18160 * 11 10 9 13 13 H 1.07993 * 120.00304 * 27.13527 * 12 11 10 14 14 C 1.38813 * 119.99575 * 206.85386 * 12 11 10 15 15 N 1.31614 * 120.00290 * 17.16731 * 14 12 11 16 16 Si 1.86810 * 119.99564 * 197.16760 * 14 12 11 17 17 H 1.48494 * 109.47108 * 60.00166 * 16 14 12 18 18 H 1.48503 * 109.46632 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47043 * 300.00011 * 16 14 12 20 20 C 1.47083 * 118.23837 * 51.45711 * 11 10 9 21 21 C 1.46900 * 110.99950 * 314.30370 * 8 7 6 22 22 C 1.51156 * 126.66933 * 180.25857 * 5 4 3 23 23 S 1.81819 * 108.33002 * 342.42408 * 22 5 4 24 24 C 1.81798 * 101.80542 * 45.32537 * 23 22 5 25 25 C 1.50631 * 124.30975 * 179.49436 * 4 3 2 26 26 H 1.08995 * 109.46997 * 270.17417 * 1 2 3 27 27 H 1.08997 * 109.47357 * 30.17553 * 1 2 3 28 28 H 1.09001 * 109.46911 * 150.17622 * 1 2 3 29 29 H 1.08997 * 109.47436 * 329.69223 * 7 6 2 30 30 H 1.09001 * 109.46989 * 209.68939 * 7 6 2 31 31 H 1.09002 * 109.49046 * 67.29429 * 9 8 7 32 32 H 1.08999 * 109.49556 * 307.21622 * 9 8 7 33 33 H 1.08998 * 109.63090 * 186.46185 * 10 9 8 34 34 H 1.09003 * 109.78826 * 65.97260 * 10 9 8 35 35 H 0.97001 * 119.99757 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.62320 * 68.25155 * 20 11 10 37 37 H 1.08997 * 109.62861 * 188.82856 * 20 11 10 38 38 H 1.09000 * 109.49232 * 292.70484 * 21 8 7 39 39 H 1.09005 * 109.49167 * 52.75416 * 21 8 7 40 40 H 1.09007 * 109.68955 * 102.13345 * 22 5 4 41 41 H 1.08998 * 109.69173 * 222.67572 * 22 5 4 42 42 H 1.08998 * 109.55311 * 53.80556 * 24 23 22 43 43 H 1.09004 * 109.54617 * 174.10440 * 24 23 22 44 44 H 1.08999 * 109.20089 * 40.29282 * 25 4 3 45 45 H 1.09001 * 109.19099 * 281.01072 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2887 1.1313 0.0000 4 6 3.5408 0.7321 -0.0081 5 6 3.5440 -0.6631 -0.0048 6 6 2.2589 -1.0902 0.0033 7 6 1.7987 -2.5252 0.0085 8 7 1.6414 -2.9940 -1.3748 9 6 0.9720 -4.3010 -1.4149 10 6 0.9892 -4.8363 -2.8506 11 7 0.4119 -3.8144 -3.7371 12 6 -0.5903 -4.1307 -4.6150 13 1 -1.2597 -4.9499 -4.3980 14 6 -0.7495 -3.3945 -5.7810 15 7 0.2307 -2.6319 -6.2168 16 14 -2.3550 -3.4862 -6.7316 17 1 -3.4706 -3.0300 -5.8642 18 1 -2.2713 -2.6129 -7.9298 19 1 -2.5995 -4.8880 -7.1561 20 6 0.9438 -2.4453 -3.6599 21 6 0.9243 -2.0030 -2.1882 22 6 4.7585 -1.5631 -0.0059 23 16 6.1960 -0.5828 -0.5334 24 6 5.9897 0.9359 0.4445 25 6 4.7277 1.6595 -0.0218 26 1 -0.3633 0.0031 1.0276 27 1 -0.3634 0.8884 -0.5165 28 1 -0.3633 -0.8916 -0.5111 29 1 0.8433 -2.5986 0.5278 30 1 2.5382 -3.1421 0.5192 31 1 -0.0594 -4.1918 -1.0797 32 1 1.4956 -4.9980 -0.7606 33 1 0.3958 -5.7487 -2.9084 34 1 2.0149 -5.0468 -3.1537 35 1 0.1193 -2.1172 -7.0314 36 1 1.9662 -2.4280 -4.0372 37 1 0.3203 -1.7763 -4.2530 38 1 -0.1064 -1.9257 -1.8423 39 1 1.4131 -1.0332 -2.0943 40 1 4.9279 -1.9526 0.9980 41 1 4.6025 -2.3896 -0.6992 42 1 5.8947 0.6802 1.4998 43 1 6.8553 1.5826 0.3007 44 1 4.5320 2.5019 0.6416 45 1 4.8809 2.0304 -1.0352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893992426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:25 Heat of formation + Delta-G solvation = 118.174399 kcal Electronic energy + Delta-G solvation = -26160.321734 eV Core-core repulsion = 22727.690100 eV Total energy + Delta-G solvation = -3432.631634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58370 -38.15181 -35.32257 -34.53239 -32.52414 -31.92804 -30.92639 -29.97447 -28.66740 -26.96499 -25.73883 -24.53716 -23.43294 -22.72362 -22.41490 -19.85883 -19.55376 -18.97489 -16.87798 -16.48497 -16.28087 -15.95735 -15.17157 -14.82576 -14.65282 -14.42596 -14.25760 -14.01549 -13.87610 -13.53685 -13.49487 -13.10669 -13.04657 -12.87258 -12.70231 -12.60360 -12.33778 -11.83418 -11.70622 -11.49282 -11.28282 -11.09848 -10.76782 -10.59595 -10.46040 -10.34540 -10.12928 -9.99230 -9.81074 -9.69365 -9.07313 -8.54104 -8.28571 -7.93112 -7.67727 -6.70854 -5.80927 -3.23050 1.71444 1.80694 2.40494 2.48290 2.71104 3.35562 3.41799 3.42459 4.29716 4.35270 4.45853 4.48423 4.72815 4.78473 4.98266 5.08319 5.10941 5.11888 5.31737 5.33519 5.36421 5.38046 5.40458 5.42969 5.51468 5.58747 5.76441 5.78134 5.81336 5.94418 6.03900 6.07309 6.14436 6.22413 6.46368 6.59904 6.61983 6.87481 6.96489 7.16687 7.40854 7.56146 7.63756 7.70430 7.76785 8.39892 9.17509 9.80911 10.39463 11.27688 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003587 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.267422 B = 7804.738493 C = 7932.764628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.361 5.361 3 N -0.295 5.295 4 C 0.078 3.922 5 C -0.227 4.227 6 C 0.113 3.887 7 C 0.112 3.888 8 N -0.522 5.522 9 C 0.045 3.955 10 C 0.149 3.851 11 N -0.595 5.595 12 C -0.256 4.256 13 H 0.066 0.934 14 C 0.004 3.996 15 N -0.901 5.901 16 Si 0.902 3.098 17 H -0.285 1.285 18 H -0.290 1.290 19 H -0.282 1.282 20 C 0.182 3.818 21 C 0.031 3.969 22 C 0.005 3.995 23 S -0.251 6.251 24 C -0.079 4.079 25 C -0.037 4.037 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.027 0.973 35 H 0.255 0.745 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.024 0.976 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.815 5.220 17.133 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.143 5.143 3 N -0.117 5.117 4 C -0.087 4.087 5 C -0.240 4.240 6 C -0.016 4.016 7 C -0.017 4.017 8 N -0.248 5.248 9 C -0.084 4.084 10 C 0.022 3.978 11 N -0.318 5.318 12 C -0.386 4.386 13 H 0.083 0.917 14 C -0.195 4.195 15 N -0.545 5.545 16 Si 0.731 3.269 17 H -0.211 1.211 18 H -0.216 1.216 19 H -0.208 1.208 20 C 0.055 3.945 21 C -0.098 4.098 22 C -0.144 4.144 23 S -0.024 6.024 24 C -0.228 4.228 25 C -0.077 4.077 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.130 0.870 44 H 0.105 0.895 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.139 5.988 16.019 18.532 hybrid contribution -2.240 -0.235 0.629 2.338 sum 4.899 5.753 16.648 18.283 Atomic orbital electron populations 1.22110 0.74184 1.05554 1.03163 1.48216 1.06363 1.03281 1.56427 1.77430 1.00643 1.07722 1.25937 1.21988 0.93385 0.93005 1.00350 1.19308 0.93384 0.92901 1.18384 1.20655 0.90233 0.90272 1.00471 1.20802 1.00090 0.88159 0.92666 1.62132 1.51976 1.03712 1.06975 1.22675 0.95581 0.89718 1.00459 1.20968 0.96962 0.92114 0.87776 1.44140 1.41242 1.03780 1.42635 1.19136 1.04934 1.16267 0.98255 0.91659 1.25033 0.97558 1.00788 0.96144 1.70018 1.29809 1.31945 1.22772 0.86384 0.83652 0.77612 0.79205 1.21146 1.21566 1.20827 1.20914 0.98152 0.86772 0.88614 1.23208 0.94064 0.94228 0.98325 1.21698 0.90503 0.97985 1.04245 1.86965 1.35894 1.18111 1.61405 1.23283 1.00702 0.97221 1.01623 1.19958 0.88473 0.95725 1.03593 0.90950 0.88963 0.88694 0.94220 0.88646 0.95283 0.91649 0.92458 0.95485 0.93480 0.95394 0.89456 0.95789 0.91959 0.89776 0.86421 0.89682 0.87042 0.89504 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 10.57 59.85 0.63 1.70 16 2 N -0.36 -5.28 3.31 -63.88 -0.21 -5.49 16 3 N -0.29 -4.61 12.59 33.67 0.42 -4.19 16 4 C 0.08 1.12 6.87 -82.32 -0.57 0.56 16 5 C -0.23 -3.24 5.85 -104.93 -0.61 -3.86 16 6 C 0.11 1.64 4.74 -82.26 -0.39 1.25 16 7 C 0.11 1.51 5.11 -4.98 -0.03 1.48 16 8 N -0.52 -8.77 4.77 -235.48 -1.12 -9.90 16 9 C 0.04 0.74 5.58 -3.71 -0.02 0.72 16 10 C 0.15 3.05 6.69 -3.60 -0.02 3.03 16 11 N -0.59 -14.82 3.03 -171.73 -0.52 -15.34 16 12 C -0.26 -6.97 9.63 -15.06 -0.15 -7.12 16 13 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 14 C 0.00 0.10 4.93 -17.43 -0.09 0.01 16 15 N -0.90 -26.27 11.16 55.49 0.62 -25.65 16 16 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.18 4.40 5.45 -3.37 -0.02 4.39 16 21 C 0.03 0.59 4.20 -3.47 -0.01 0.58 16 22 C 0.00 0.06 6.20 36.23 0.22 0.28 16 23 S -0.25 -3.13 22.25 -107.50 -2.39 -5.52 16 24 C -0.08 -0.75 6.45 37.04 0.24 -0.51 16 25 C -0.04 -0.40 6.06 -28.04 -0.17 -0.57 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.09 1.17 4.76 -51.93 -0.25 0.92 16 29 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 30 H 0.10 1.11 7.83 -51.93 -0.41 0.70 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.06 1.13 7.95 -51.93 -0.41 0.71 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 38 H 0.02 0.46 6.16 -51.93 -0.32 0.14 16 39 H 0.06 1.22 5.74 -51.93 -0.30 0.92 16 40 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 41 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 356.45 15.07 5.37 5.37 Total: -1.00 -31.59 356.45 -10.86 -42.45 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.02 Total: -0.18 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.98 Total: 1.95 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.81 Total: -60.56 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.39 Total: -5.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.59 -10.86 -42.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893992426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.625 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds