Wall clock time and date at job start Fri Apr 10 2020 14:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39943 * 126.05903 * 2 1 4 4 C 1.31422 * 108.37279 * 180.37267 * 3 2 1 5 5 C 1.39521 * 107.81579 * 359.62463 * 4 3 2 6 6 C 1.34864 * 126.06270 * 179.82594 * 2 1 3 7 7 C 1.50701 * 126.15858 * 359.96272 * 6 2 1 8 8 N 1.46900 * 109.47460 * 89.69071 * 7 6 2 9 9 C 1.46891 * 111.00538 * 189.99759 * 8 7 6 10 10 C 1.53236 * 109.34490 * 187.25409 * 9 8 7 11 11 N 1.47086 * 108.51747 * 306.17144 * 10 9 8 12 12 C 1.36936 * 120.87786 * 231.18160 * 11 10 9 13 13 H 1.07993 * 120.00304 * 27.13527 * 12 11 10 14 14 C 1.38813 * 119.99575 * 206.85386 * 12 11 10 15 15 N 1.31614 * 120.00290 * 17.16731 * 14 12 11 16 16 Si 1.86810 * 119.99564 * 197.16760 * 14 12 11 17 17 H 1.48494 * 109.47108 * 60.00166 * 16 14 12 18 18 H 1.48503 * 109.46632 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47043 * 300.00011 * 16 14 12 20 20 C 1.47083 * 118.23837 * 51.45711 * 11 10 9 21 21 C 1.46900 * 110.99950 * 314.30370 * 8 7 6 22 22 C 1.51156 * 126.66933 * 180.25857 * 5 4 3 23 23 S 1.81819 * 108.33002 * 342.42408 * 22 5 4 24 24 C 1.81798 * 101.80542 * 45.32537 * 23 22 5 25 25 C 1.50631 * 124.30975 * 179.49436 * 4 3 2 26 26 H 1.08995 * 109.46997 * 270.17417 * 1 2 3 27 27 H 1.08997 * 109.47357 * 30.17553 * 1 2 3 28 28 H 1.09001 * 109.46911 * 150.17622 * 1 2 3 29 29 H 1.08997 * 109.47436 * 329.69223 * 7 6 2 30 30 H 1.09001 * 109.46989 * 209.68939 * 7 6 2 31 31 H 1.09002 * 109.49046 * 67.29429 * 9 8 7 32 32 H 1.08999 * 109.49556 * 307.21622 * 9 8 7 33 33 H 1.08998 * 109.63090 * 186.46185 * 10 9 8 34 34 H 1.09003 * 109.78826 * 65.97260 * 10 9 8 35 35 H 0.97001 * 119.99757 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.62320 * 68.25155 * 20 11 10 37 37 H 1.08997 * 109.62861 * 188.82856 * 20 11 10 38 38 H 1.09000 * 109.49232 * 292.70484 * 21 8 7 39 39 H 1.09005 * 109.49167 * 52.75416 * 21 8 7 40 40 H 1.09007 * 109.68955 * 102.13345 * 22 5 4 41 41 H 1.08998 * 109.69173 * 222.67572 * 22 5 4 42 42 H 1.08998 * 109.55311 * 53.80556 * 24 23 22 43 43 H 1.09004 * 109.54617 * 174.10440 * 24 23 22 44 44 H 1.08999 * 109.20089 * 40.29282 * 25 4 3 45 45 H 1.09001 * 109.19099 * 281.01072 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2887 1.1313 0.0000 4 6 3.5408 0.7321 -0.0081 5 6 3.5440 -0.6631 -0.0048 6 6 2.2589 -1.0902 0.0033 7 6 1.7987 -2.5252 0.0085 8 7 1.6414 -2.9940 -1.3748 9 6 0.9720 -4.3010 -1.4149 10 6 0.9892 -4.8363 -2.8506 11 7 0.4119 -3.8144 -3.7371 12 6 -0.5903 -4.1307 -4.6150 13 1 -1.2597 -4.9499 -4.3980 14 6 -0.7495 -3.3945 -5.7810 15 7 0.2307 -2.6319 -6.2168 16 14 -2.3550 -3.4862 -6.7316 17 1 -3.4706 -3.0300 -5.8642 18 1 -2.2713 -2.6129 -7.9298 19 1 -2.5995 -4.8880 -7.1561 20 6 0.9438 -2.4453 -3.6599 21 6 0.9243 -2.0030 -2.1882 22 6 4.7585 -1.5631 -0.0059 23 16 6.1960 -0.5828 -0.5334 24 6 5.9897 0.9359 0.4445 25 6 4.7277 1.6595 -0.0218 26 1 -0.3633 0.0031 1.0276 27 1 -0.3634 0.8884 -0.5165 28 1 -0.3633 -0.8916 -0.5111 29 1 0.8433 -2.5986 0.5278 30 1 2.5382 -3.1421 0.5192 31 1 -0.0594 -4.1918 -1.0797 32 1 1.4956 -4.9980 -0.7606 33 1 0.3958 -5.7487 -2.9084 34 1 2.0149 -5.0468 -3.1537 35 1 0.1193 -2.1172 -7.0314 36 1 1.9662 -2.4280 -4.0372 37 1 0.3203 -1.7763 -4.2530 38 1 -0.1064 -1.9257 -1.8423 39 1 1.4131 -1.0332 -2.0943 40 1 4.9279 -1.9526 0.9980 41 1 4.6025 -2.3896 -0.6992 42 1 5.8947 0.6802 1.4998 43 1 6.8553 1.5826 0.3007 44 1 4.5320 2.5019 0.6416 45 1 4.8809 2.0304 -1.0352 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893992426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:24 Heat of formation + Delta-G solvation = 98.042813 kcal Electronic energy + Delta-G solvation = -26161.194705 eV Core-core repulsion = 22727.690100 eV Total energy + Delta-G solvation = -3433.504605 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.64643 -39.65625 -36.61290 -35.90012 -33.86283 -33.12048 -32.37931 -31.63204 -29.90350 -28.33275 -26.84272 -26.04879 -24.35146 -24.31333 -24.06197 -21.08617 -20.82348 -20.28724 -18.74037 -17.59182 -17.39206 -17.11993 -16.68944 -16.11257 -15.93896 -15.77530 -15.49162 -15.24812 -15.09473 -14.94117 -14.83707 -14.72396 -14.29771 -13.93073 -13.73455 -13.61029 -13.40989 -13.24305 -13.09035 -12.87792 -12.61962 -12.57870 -12.44602 -12.23528 -12.05306 -11.91844 -11.65797 -11.53067 -11.46898 -10.89016 -10.61026 -10.15285 -9.36406 -9.26127 -8.71312 -8.63912 -7.89852 -5.35374 0.69334 0.86158 1.45021 1.45861 1.46966 1.52280 1.54180 1.70742 2.48825 3.00396 3.26059 3.38988 3.41965 3.64071 3.81507 3.92559 4.05322 4.09319 4.19968 4.24853 4.27154 4.30644 4.36899 4.43641 4.44969 4.48509 4.59518 4.62407 4.66203 4.70452 4.77876 4.85605 4.92299 4.96814 4.98600 5.12452 5.15440 5.33031 5.58820 5.59246 5.61167 5.93294 6.05154 6.15690 6.33978 6.63679 7.09841 7.81090 8.35584 9.16804 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017150 B = 0.003587 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.267422 B = 7804.738493 C = 7932.764628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.368 5.368 3 N -0.322 5.322 4 C 0.068 3.932 5 C -0.239 4.239 6 C 0.101 3.899 7 C 0.119 3.881 8 N -0.533 5.533 9 C 0.057 3.943 10 C 0.142 3.858 11 N -0.612 5.612 12 C -0.265 4.265 13 H 0.072 0.928 14 C -0.051 4.051 15 N -0.938 5.938 16 Si 0.968 3.032 17 H -0.276 1.276 18 H -0.297 1.297 19 H -0.273 1.273 20 C 0.191 3.809 21 C 0.058 3.942 22 C 0.014 3.986 23 S -0.296 6.296 24 C -0.062 4.062 25 C -0.037 4.037 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.033 0.967 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.014 0.986 35 H 0.249 0.751 36 H -0.011 1.011 37 H 0.052 0.948 38 H 0.030 0.970 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.136 0.864 44 H 0.106 0.894 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 4.802 19.725 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.150 5.150 3 N -0.146 5.146 4 C -0.097 4.097 5 C -0.252 4.252 6 C -0.029 4.029 7 C -0.009 4.009 8 N -0.259 5.259 9 C -0.072 4.072 10 C 0.016 3.984 11 N -0.336 5.336 12 C -0.395 4.395 13 H 0.090 0.910 14 C -0.246 4.246 15 N -0.584 5.584 16 Si 0.796 3.204 17 H -0.202 1.202 18 H -0.223 1.223 19 H -0.199 1.199 20 C 0.065 3.935 21 C -0.071 4.071 22 C -0.135 4.135 23 S -0.069 6.069 24 C -0.210 4.210 25 C -0.078 4.078 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.052 0.948 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.032 0.968 35 H 0.058 0.942 36 H 0.007 0.993 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.154 0.846 44 H 0.125 0.875 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.816 5.545 18.652 20.618 hybrid contribution -2.084 -0.114 -0.158 2.093 sum 4.732 5.431 18.494 19.847 Atomic orbital electron populations 1.22245 0.73052 1.05194 1.04787 1.48453 1.07159 1.03142 1.56230 1.77378 1.01442 1.08678 1.27085 1.22541 0.93893 0.93697 0.99577 1.19628 0.94012 0.93333 1.18193 1.20889 0.90500 0.90725 1.00748 1.20867 1.01810 0.87871 0.90397 1.62006 1.51493 1.03289 1.09144 1.22525 0.96566 0.90088 0.97972 1.21169 0.95950 0.91769 0.89484 1.44410 1.41297 1.04869 1.43024 1.19537 1.05489 1.16017 0.98450 0.90995 1.25821 1.00517 1.00932 0.97375 1.70202 1.31835 1.33239 1.23141 0.85338 0.79901 0.77667 0.77538 1.20236 1.22296 1.19883 1.20584 0.94873 0.86491 0.91537 1.22692 0.94709 0.94384 0.95318 1.21645 0.89668 0.97163 1.04991 1.87118 1.36113 1.20600 1.63025 1.23346 1.00873 0.95334 1.01457 1.20074 0.87931 0.95881 1.03880 0.88301 0.88958 0.89335 0.92320 0.86079 0.94837 0.87618 0.91620 0.96780 0.94184 0.99339 0.93007 0.95201 0.92573 0.87562 0.87849 0.88270 0.84553 0.87540 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.93 10.57 127.77 1.35 3.28 16 2 N -0.37 -10.30 3.31 -356.01 -1.18 -11.48 16 3 N -0.32 -9.82 12.59 -47.37 -0.60 -10.42 16 4 C 0.07 1.87 6.87 42.91 0.29 2.16 16 5 C -0.24 -6.49 5.85 -20.06 -0.12 -6.61 16 6 C 0.10 2.76 4.74 41.44 0.20 2.96 16 7 C 0.12 2.84 5.11 85.56 0.44 3.28 16 8 N -0.53 -17.02 4.77 -898.91 -4.29 -21.31 16 9 C 0.06 1.74 5.58 86.38 0.48 2.22 16 10 C 0.14 5.72 6.69 86.35 0.58 6.29 16 11 N -0.61 -30.94 3.03 -697.24 -2.11 -33.06 16 12 C -0.26 -14.54 9.63 84.03 0.81 -13.73 16 13 H 0.07 3.78 7.88 -2.91 -0.02 3.75 16 14 C -0.05 -2.88 4.93 84.86 0.42 -2.46 16 15 N -0.94 -56.88 11.16 21.65 0.24 -56.64 16 16 Si 0.97 44.88 29.59 68.60 2.03 46.91 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 C 0.19 9.66 5.45 86.50 0.47 10.13 16 21 C 0.06 2.24 4.20 86.54 0.36 2.61 16 22 C 0.01 0.34 6.20 71.38 0.44 0.78 16 23 S -0.30 -7.06 22.25 -56.49 -1.26 -8.32 16 24 C -0.06 -1.01 6.45 71.90 0.46 -0.55 16 25 C -0.04 -0.74 6.06 29.75 0.18 -0.56 16 26 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.09 2.05 4.76 -2.39 -0.01 2.04 16 29 H 0.06 1.23 7.68 -2.39 -0.02 1.21 16 30 H 0.12 2.32 7.83 -2.39 -0.02 2.30 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 2.44 8.11 -2.39 -0.02 2.42 16 33 H 0.07 2.50 7.95 -2.39 -0.02 2.48 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 37 H 0.05 2.95 6.12 -2.39 -0.01 2.94 16 38 H 0.03 1.12 6.16 -2.39 -0.01 1.11 16 39 H 0.06 2.23 5.74 -2.38 -0.01 2.22 16 40 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -70.98 356.45 0.19 -70.79 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.98 Total: 13.72 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 6.37 Total: 9.79 kcal Atomic # 7 Polarization: -124.97 SS G_CDS: -7.93 Total: -132.90 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: -7.06 SS G_CDS: -1.26 Total: -8.32 kcal Total: -70.98 0.19 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893992426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.836 kcal (2) G-P(sol) polarization free energy of solvation -70.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds