Wall clock time and date at job start Fri Apr 10 2020 14:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47018 * 2 1 4 4 F 1.39892 * 109.47123 * 240.00059 * 2 1 3 5 5 C 1.50700 * 109.47016 * 119.99681 * 2 1 3 6 6 O 1.21279 * 119.99804 * 249.99827 * 5 2 1 7 7 N 1.34777 * 120.00078 * 70.00389 * 5 2 1 8 8 C 1.46496 * 120.00054 * 179.97438 * 7 5 2 9 9 H 1.09002 * 110.41668 * 34.29644 * 8 7 5 10 10 C 1.54735 * 110.46422 * 156.78515 * 8 7 5 11 11 C 1.53848 * 101.34139 * 143.10630 * 10 8 7 12 12 C 1.53042 * 115.27829 * 105.32126 * 11 10 8 13 13 N 1.47752 * 85.82714 * 93.64129 * 12 11 10 14 14 C 1.36942 * 134.41025 * 203.97564 * 13 12 11 15 15 H 1.08002 * 119.99429 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99997 * 359.97438 * 14 13 12 17 17 N 1.31613 * 119.99938 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 119.99868 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47151 * 59.99973 * 18 16 14 20 20 H 1.48493 * 109.47049 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47016 * 299.99896 * 18 16 14 22 22 C 1.47752 * 91.17401 * 23.96970 * 13 12 11 23 23 N 1.46161 * 106.67265 * 335.08014 * 11 10 8 24 24 C 1.37263 * 142.22197 * 196.46277 * 23 11 10 25 25 C 1.34527 * 106.91385 * 179.91263 * 24 23 11 26 26 N 1.33977 * 108.04689 * 0.02562 * 25 24 23 27 27 C 1.30855 * 109.34931 * 0.02782 * 26 25 24 28 28 H 1.09008 * 109.47514 * 300.00321 * 1 2 3 29 29 H 1.09006 * 109.47562 * 60.00199 * 1 2 3 30 30 H 1.09000 * 109.47579 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47206 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47029 * 299.99733 * 3 2 1 33 33 H 1.08998 * 109.46837 * 59.99879 * 3 2 1 34 34 H 0.97003 * 119.99525 * 359.97438 * 7 5 2 35 35 H 1.08998 * 111.02093 * 261.19927 * 10 8 7 36 36 H 1.08999 * 111.02005 * 25.09959 * 10 8 7 37 37 H 1.09008 * 113.81433 * 207.86732 * 12 11 10 38 38 H 1.09001 * 113.81414 * 339.40698 * 12 11 10 39 39 H 0.97004 * 120.00341 * 180.02562 * 17 16 14 40 40 H 1.09005 * 113.81557 * 221.79150 * 22 13 12 41 41 H 1.09004 * 113.81140 * 90.25453 * 22 13 12 42 42 H 1.07994 * 126.54134 * 359.87986 * 24 23 11 43 43 H 1.08004 * 125.97073 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 9 1.9962 -0.6594 -1.1422 5 6 2.0322 -0.7103 1.2305 6 8 2.5731 -0.0815 2.1153 7 7 1.8806 -2.0444 1.3476 8 6 2.3694 -2.7350 2.5436 9 1 2.2586 -2.0990 3.4218 10 6 1.6139 -4.0705 2.7438 11 6 2.7376 -4.9770 3.2751 12 6 2.6775 -5.2826 4.7735 13 7 1.9328 -6.4985 4.3858 14 6 1.0398 -7.3189 5.0220 15 1 0.6250 -8.1707 4.5034 16 6 0.6677 -7.0557 6.3331 17 7 1.1728 -6.0174 6.9647 18 14 -0.5500 -8.1752 7.2011 19 1 -0.0035 -9.5550 7.2533 20 1 -0.7796 -7.6806 8.5822 21 1 -1.8353 -8.1797 6.4574 22 6 2.5367 -6.4752 3.0376 23 7 3.9957 -4.4148 2.7878 24 6 5.3207 -4.7210 2.6012 25 6 5.9035 -3.6304 2.0714 26 7 4.9661 -2.6827 1.9369 27 6 3.8187 -3.1440 2.3649 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.4477 -2.5472 0.6400 35 1 0.8162 -3.9620 3.4786 36 1 1.2235 -4.4446 1.7974 37 1 3.6505 -5.4862 5.2206 38 1 2.0858 -4.5675 5.3451 39 1 0.9131 -5.8336 7.8811 40 1 1.8337 -6.7035 2.2364 41 1 3.4675 -7.0376 2.9625 42 1 5.8032 -5.6582 2.8355 43 1 6.9450 -3.5355 1.8017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092343987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:46 Heat of formation + Delta-G solvation = 51.068618 kcal Electronic energy + Delta-G solvation = -27991.634369 eV Core-core repulsion = 23989.879634 eV Total energy + Delta-G solvation = -4001.754735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.05261 -42.28574 -39.66620 -38.58353 -35.68923 -33.84876 -33.38786 -31.83143 -30.63432 -28.18431 -27.76170 -27.40766 -25.38476 -25.00032 -23.36643 -22.15257 -21.23530 -20.29716 -19.77820 -18.71056 -18.10544 -17.09398 -16.57929 -16.17377 -15.90085 -15.40602 -15.08623 -14.77135 -14.61722 -14.38615 -14.05960 -13.91667 -13.61315 -13.46500 -13.31106 -12.91712 -12.74033 -12.59179 -12.49483 -12.31717 -12.23603 -12.12641 -11.85457 -11.60021 -11.22215 -11.15353 -11.04779 -10.93348 -10.61811 -10.26061 -9.85261 -9.81856 -9.55096 -9.29772 -9.03454 -9.00734 -8.05690 -7.19894 -5.99277 -3.35043 2.28118 2.41741 2.81236 3.12272 3.27661 3.33237 3.34018 3.52397 4.05870 4.14648 4.19718 4.26228 4.39983 4.51827 4.57098 4.78392 4.89646 4.91210 5.18497 5.26324 5.27294 5.36306 5.38424 5.43327 5.62165 5.64347 5.74248 5.81249 5.84819 5.91347 5.96908 6.03659 6.14154 6.18327 6.29696 6.73069 6.79417 6.89896 7.17077 7.22062 7.28280 7.45823 7.71768 8.01273 8.48357 8.79902 9.46538 10.26742 11.17415 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015712 B = 0.003642 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.705190 B = 7685.394206 C = 8754.193628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 C -0.158 4.158 4 F -0.195 7.195 5 C 0.506 3.494 6 O -0.508 6.508 7 N -0.707 5.707 8 C 0.229 3.771 9 H 0.120 0.880 10 C -0.094 4.094 11 C 0.101 3.899 12 C 0.171 3.829 13 N -0.599 5.599 14 C -0.233 4.233 15 H 0.084 0.916 16 C 0.000 4.000 17 N -0.918 5.918 18 Si 0.917 3.083 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.282 1.282 22 C 0.125 3.875 23 N -0.451 5.451 24 C -0.026 4.026 25 C -0.036 4.036 26 N -0.471 5.471 27 C 0.166 3.834 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.404 0.596 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.087 0.913 39 H 0.259 0.741 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.168 0.832 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.722 9.182 -13.780 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.082 3.918 3 C -0.216 4.216 4 F -0.176 7.176 5 C 0.289 3.711 6 O -0.382 6.382 7 N -0.358 5.358 8 C 0.122 3.878 9 H 0.137 0.863 10 C -0.133 4.133 11 C 0.016 3.984 12 C 0.045 3.955 13 N -0.326 5.326 14 C -0.360 4.360 15 H 0.102 0.898 16 C -0.198 4.198 17 N -0.564 5.564 18 Si 0.746 3.254 19 H -0.210 1.210 20 H -0.214 1.214 21 H -0.208 1.208 22 C -0.002 4.002 23 N -0.134 5.134 24 C -0.159 4.159 25 C -0.185 4.185 26 N -0.190 5.190 27 C -0.098 4.098 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.240 0.760 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.185 0.815 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.435 10.071 -13.078 16.512 hybrid contribution -0.435 -2.018 0.488 2.121 sum -0.871 8.053 -12.590 14.970 Atomic orbital electron populations 1.22401 0.91468 1.04424 1.04730 1.21199 0.96263 0.93593 0.80695 1.22173 1.03434 0.92154 1.03818 1.92919 1.90290 1.82672 1.51716 1.20749 0.79131 0.82641 0.88562 1.90762 1.40553 1.65741 1.41110 1.45855 1.60632 1.07533 1.21801 1.20039 0.84249 0.94139 0.89354 0.86268 1.22645 0.96873 0.90405 1.03386 1.23834 0.79289 0.95170 1.00094 1.22504 0.95602 0.89593 0.87769 1.45769 1.47337 1.30138 1.09361 1.18936 1.15894 1.06053 0.95129 0.89788 1.24821 1.00156 0.98341 0.96448 1.69772 1.46043 1.28350 1.12185 0.86140 0.80657 0.79782 0.78808 1.21013 1.21371 1.20809 1.22712 0.96791 0.89827 0.90889 1.46548 1.07794 1.14133 1.44880 1.22352 0.82491 1.02240 1.08858 1.22225 0.99204 0.89967 1.07076 1.69781 0.97510 1.30843 1.20860 1.24447 0.96746 0.84919 1.03730 0.89795 0.90062 0.90719 0.90596 0.90784 0.89682 0.76045 0.86407 0.89184 0.94607 0.89454 0.93131 0.92429 0.94092 0.81516 0.81341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.91 37.15 0.33 -0.94 16 2 C 0.10 1.10 1.53 -91.77 -0.14 0.96 16 3 C -0.16 -1.52 8.28 37.16 0.31 -1.21 16 4 F -0.20 -2.32 16.74 2.25 0.04 -2.28 16 5 C 0.51 6.97 6.79 -10.99 -0.07 6.90 16 6 O -0.51 -8.82 15.66 5.56 0.09 -8.73 16 7 N -0.71 -9.07 5.12 -53.58 -0.27 -9.35 16 8 C 0.23 3.49 3.25 -67.70 -0.22 3.27 16 9 H 0.12 1.95 7.61 -51.93 -0.40 1.56 16 10 C -0.09 -1.38 6.19 -25.38 -0.16 -1.53 16 11 C 0.10 1.78 1.56 -136.54 -0.21 1.56 16 12 C 0.17 3.76 6.94 -3.34 -0.02 3.74 16 13 N -0.60 -13.92 3.69 -182.60 -0.67 -14.59 16 14 C -0.23 -6.00 10.70 -15.06 -0.16 -6.16 16 15 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 16 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 17 N -0.92 -25.40 11.39 55.49 0.63 -24.77 16 18 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 C 0.12 2.32 8.46 -3.35 -0.03 2.30 16 23 N -0.45 -7.86 3.37 -103.32 -0.35 -8.20 16 24 C -0.03 -0.41 12.03 -16.43 -0.20 -0.61 16 25 C -0.04 -0.58 11.86 -17.93 -0.21 -0.80 16 26 N -0.47 -9.00 11.25 -10.49 -0.12 -9.12 16 27 C 0.17 2.97 8.23 -154.60 -1.27 1.69 16 28 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.79 7.99 -51.93 -0.41 0.37 16 34 H 0.40 4.17 8.37 -40.82 -0.34 3.83 16 35 H 0.12 1.79 7.93 -51.93 -0.41 1.37 16 36 H 0.09 1.10 7.78 -51.93 -0.40 0.70 16 37 H 0.04 0.85 8.14 -51.92 -0.42 0.42 16 38 H 0.09 2.08 7.09 -51.93 -0.37 1.71 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 0.98 8.09 -51.93 -0.42 0.56 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.17 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.17 2.22 8.06 -52.48 -0.42 1.79 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -32.70 362.46 -8.48 -41.19 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.11 Total: 5.61 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -2.16 Total: 9.07 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.78 Total: -66.03 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.09 Total: -8.73 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.70 -8.48 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092343987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.255 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds