Wall clock time and date at job start Fri Apr 10 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00191 * 2 1 4 4 H 1.48498 * 109.47218 * 270.00216 * 3 2 1 5 5 H 1.48497 * 109.47130 * 30.00261 * 3 2 1 6 6 H 1.48503 * 109.47307 * 150.00300 * 3 2 1 7 7 C 1.37881 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00696 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99744 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47004 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47404 * 304.99339 * 11 10 9 13 13 N 1.46899 * 109.47329 * 65.00108 * 11 10 9 14 14 C 1.50706 * 109.46974 * 184.99942 * 11 10 9 15 15 O 1.21286 * 119.99682 * 260.00069 * 14 11 10 16 16 N 1.34771 * 119.99897 * 79.99464 * 14 11 10 17 17 C 1.46509 * 119.99663 * 180.02562 * 16 14 11 18 18 C 1.50706 * 109.46683 * 180.02562 * 17 16 14 19 19 C 1.38163 * 120.02719 * 259.97425 * 18 17 16 20 20 C 1.38243 * 120.05442 * 180.02562 * 19 18 17 21 21 C 1.38289 * 120.11362 * 0.02562 * 20 19 18 22 22 C 1.38125 * 120.05159 * 359.97438 * 21 20 19 23 23 C 1.38708 * 120.02782 * 80.00212 * 18 17 16 24 24 O 1.35898 * 120.05505 * 359.97438 * 23 18 17 25 25 C 1.42904 * 116.99940 * 179.97438 * 24 23 18 26 26 C 1.53002 * 109.47009 * 179.97438 * 25 24 23 27 27 O 1.42903 * 109.47271 * 65.00145 * 26 25 24 28 28 H 0.97004 * 120.00488 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47643 * 59.99470 * 9 7 2 30 30 H 1.09008 * 109.47291 * 299.99789 * 9 7 2 31 31 H 1.08999 * 109.47274 * 59.99912 * 10 9 7 32 32 H 1.08996 * 109.46790 * 299.99592 * 10 9 7 33 33 H 1.00902 * 110.99677 * 296.04014 * 13 11 10 34 34 H 1.00896 * 111.00266 * 59.99817 * 13 11 10 35 35 H 0.96997 * 120.00408 * 0.02562 * 16 14 11 36 36 H 1.08993 * 109.46757 * 60.00448 * 17 16 14 37 37 H 1.08998 * 109.46796 * 300.00373 * 17 16 14 38 38 H 1.08001 * 119.97035 * 0.03182 * 19 18 17 39 39 H 1.08004 * 119.94085 * 180.02562 * 20 19 18 40 40 H 1.07993 * 119.96940 * 180.27537 * 21 20 19 41 41 H 1.08000 * 120.02369 * 180.02562 * 22 21 20 42 42 H 1.08999 * 109.47040 * 299.99833 * 25 24 23 43 43 H 1.08995 * 109.47340 * 59.99861 * 25 24 23 44 44 H 1.09005 * 109.47018 * 184.99935 * 26 25 24 45 45 H 1.08996 * 109.47457 * 304.99649 * 26 25 24 46 46 H 0.96700 * 113.99903 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5514 -2.6366 -0.0022 12 1 5.9148 -2.0466 -0.8436 13 7 6.0411 -2.0524 1.2535 14 6 6.0538 -4.0520 -0.1272 15 8 6.4278 -4.6519 0.8583 16 7 6.0873 -4.6511 -1.3340 17 6 6.5751 -6.0272 -1.4553 18 6 6.5105 -6.4576 -2.8982 19 6 5.4637 -7.2442 -3.3389 20 6 5.4042 -7.6397 -4.6622 21 6 6.3920 -7.2499 -5.5479 22 6 7.4406 -6.4635 -5.1123 23 6 7.5024 -6.0648 -3.7847 24 8 8.5331 -5.2911 -3.3537 25 6 9.5186 -4.9251 -4.3217 26 6 10.5910 -4.0605 -3.6559 27 8 11.2897 -4.8359 -2.6798 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 3.6578 -3.1499 -0.8924 32 1 3.6585 -3.1510 0.8875 33 1 5.7717 -1.0830 1.3305 34 1 5.7176 -2.5819 2.0491 35 1 5.7884 -4.1712 -2.1222 36 1 5.9536 -6.6876 -0.8507 37 1 7.6066 -6.0790 -1.1068 38 1 4.6911 -7.5502 -2.6490 39 1 4.5847 -8.2543 -5.0048 40 1 6.3408 -7.5565 -6.5822 41 1 8.2116 -6.1589 -5.8045 42 1 9.9786 -5.8250 -4.7300 43 1 9.0460 -4.3617 -5.1262 44 1 11.2939 -3.7080 -4.4109 45 1 10.1194 -3.2057 -3.1713 46 1 11.9863 -4.3504 -2.2170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424124499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:26 Heat of formation + Delta-G solvation = -109.401062 kcal Electronic energy + Delta-G solvation = -26985.602207 eV Core-core repulsion = 23068.056538 eV Total energy + Delta-G solvation = -3917.545669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64799 -39.42685 -38.08204 -36.72698 -35.68644 -34.77389 -32.77549 -31.68630 -30.85245 -30.27711 -29.52489 -27.36397 -25.72709 -24.06204 -23.40825 -21.93376 -21.44452 -20.48783 -19.79439 -18.55748 -17.98730 -17.41963 -16.65780 -16.45127 -16.21068 -15.99497 -15.48188 -14.99374 -14.78974 -14.57991 -14.45701 -14.23553 -14.21394 -13.99191 -13.32199 -13.20646 -13.05055 -12.87158 -12.70589 -12.66401 -12.38311 -11.85052 -11.78036 -11.60885 -11.36009 -11.30700 -11.07504 -10.95169 -10.45676 -10.32514 -10.04762 -9.87256 -9.47874 -9.29253 -9.11344 -8.86126 -8.60682 -8.43296 -8.23808 -6.10244 -4.09445 0.97301 1.17429 2.84493 3.01064 3.25586 3.26327 3.34026 3.35731 3.70920 3.77601 4.38467 4.38941 4.46605 4.59796 4.67095 4.78296 4.86155 4.91177 5.05738 5.08464 5.11307 5.14281 5.22976 5.25734 5.40132 5.48297 5.53786 5.63310 5.67878 5.88079 6.03148 6.18045 6.19758 6.27729 6.37704 6.50796 6.60255 6.69793 7.10954 7.12810 7.23552 7.24749 7.40610 7.69038 7.76909 7.83793 8.46509 8.54317 8.94145 9.51159 11.03069 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.002974 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.336729 B = 9412.122294 C =10236.098232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.129 4.129 11 C 0.073 3.927 12 H 0.094 0.906 13 N -0.830 5.830 14 C 0.526 3.474 15 O -0.539 6.539 16 N -0.725 5.725 17 C 0.173 3.827 18 C -0.138 4.138 19 C -0.060 4.060 20 C -0.160 4.160 21 C -0.074 4.074 22 C -0.215 4.215 23 C 0.147 3.853 24 O -0.297 6.297 25 C 0.058 3.942 26 C 0.077 3.923 27 O -0.566 6.566 28 H 0.264 0.736 29 H 0.016 0.984 30 H 0.013 0.987 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.349 0.651 34 H 0.348 0.652 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.133 0.867 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.127 0.873 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.082 -11.988 -13.265 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.169 4.169 11 C -0.042 4.042 12 H 0.112 0.888 13 N -0.362 5.362 14 C 0.313 3.687 15 O -0.415 6.415 16 N -0.377 5.377 17 C 0.050 3.950 18 C -0.140 4.140 19 C -0.079 4.079 20 C -0.178 4.178 21 C -0.092 4.092 22 C -0.234 4.234 23 C 0.101 3.899 24 O -0.209 6.209 25 C -0.017 4.017 26 C -0.001 4.001 27 O -0.372 6.372 28 H 0.073 0.927 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 20.578 -12.843 -12.811 27.432 hybrid contribution -0.477 1.696 -0.510 1.834 sum 20.101 -11.147 -13.322 26.566 Atomic orbital electron populations 1.69911 1.06339 1.26980 1.50780 1.25045 0.94755 0.99223 0.94462 0.86756 0.80338 0.83545 0.78486 1.20305 1.21351 1.18961 1.21081 0.89269 0.94529 1.51191 0.91056 1.19577 0.97510 0.91464 0.96256 1.22195 0.91375 1.00989 1.02340 1.21490 0.95562 0.91838 0.95344 0.88760 1.58725 1.66758 1.07331 1.03410 1.20733 0.76841 0.88610 0.82527 1.90638 1.47560 1.66143 1.37159 1.45978 1.67014 1.14799 1.09940 1.19913 1.00729 0.83236 0.91092 1.19281 0.95655 1.03596 0.95427 1.21022 0.95936 0.94884 0.96019 1.21076 1.00107 1.03086 0.93556 1.20980 0.93130 0.95497 0.99580 1.21221 1.02156 1.05165 0.94824 1.18868 0.87778 0.91072 0.92191 1.86219 1.32473 1.64653 1.37604 1.22890 0.88129 0.99510 0.91159 1.22186 0.92640 0.93477 0.91772 1.86552 1.53444 1.41644 1.55541 0.92655 0.96589 0.96858 0.91931 0.92045 0.83609 0.83863 0.76604 0.90969 0.90450 0.84925 0.85625 0.85757 0.85518 0.91294 0.90487 0.91489 0.92129 0.77001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.79 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.24 27.47 -169.99 -4.67 16.57 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.24 3.81 -27.88 -0.11 -0.35 16 10 C -0.13 -2.50 4.78 -26.73 -0.13 -2.62 16 11 C 0.07 1.22 3.21 -68.86 -0.22 1.00 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 N -0.83 -13.98 8.94 -5.65 -0.05 -14.03 16 14 C 0.53 8.99 7.08 -10.98 -0.08 8.92 16 15 O -0.54 -10.88 16.25 5.55 0.09 -10.79 16 16 N -0.72 -10.22 5.55 -61.46 -0.34 -10.56 16 17 C 0.17 2.29 5.46 -5.19 -0.03 2.26 16 18 C -0.14 -1.58 5.26 -104.47 -0.55 -2.13 16 19 C -0.06 -0.60 9.67 -39.61 -0.38 -0.98 16 20 C -0.16 -1.40 10.04 -39.56 -0.40 -1.80 16 21 C -0.07 -0.61 10.04 -39.60 -0.40 -1.01 16 22 C -0.21 -1.94 9.04 -39.43 -0.36 -2.29 16 23 C 0.15 1.62 6.66 -39.22 -0.26 1.36 16 24 O -0.30 -3.40 9.34 -24.26 -0.23 -3.63 16 25 C 0.06 0.46 5.12 37.16 0.19 0.65 16 26 C 0.08 0.55 7.43 37.16 0.28 0.82 16 27 O -0.57 -5.12 13.63 -40.08 -0.55 -5.67 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 29 H 0.02 0.36 5.93 -51.93 -0.31 0.05 16 30 H 0.01 0.29 7.57 -51.92 -0.39 -0.10 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.35 5.67 7.55 -39.29 -0.30 5.37 16 34 H 0.35 5.98 8.58 -39.29 -0.34 5.64 16 35 H 0.40 5.06 8.46 -40.82 -0.35 4.71 16 36 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 37 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 38 H 0.13 1.17 8.04 -52.49 -0.42 0.75 16 39 H 0.13 0.86 8.06 -52.48 -0.42 0.43 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 42 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 43 H 0.08 0.45 7.66 -51.93 -0.40 0.05 16 44 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.38 1.75 9.12 45.56 0.42 2.17 16 LS Contribution 384.45 15.07 5.79 5.79 Total: -1.00 -35.76 384.45 -8.23 -43.99 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -6.18 Total: 14.44 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -2.87 Total: -9.32 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.38 Total: -51.38 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.68 Total: -20.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.76 -8.23 -43.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.414 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds