Wall clock time and date at job start Fri Apr 10 2020 14:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00191 * 2 1 4 4 H 1.48498 * 109.47218 * 270.00216 * 3 2 1 5 5 H 1.48497 * 109.47130 * 30.00261 * 3 2 1 6 6 H 1.48503 * 109.47307 * 150.00300 * 3 2 1 7 7 C 1.37881 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00696 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99744 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47289 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47004 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.47404 * 304.99339 * 11 10 9 13 13 N 1.46899 * 109.47329 * 65.00108 * 11 10 9 14 14 C 1.50706 * 109.46974 * 184.99942 * 11 10 9 15 15 O 1.21286 * 119.99682 * 260.00069 * 14 11 10 16 16 N 1.34771 * 119.99897 * 79.99464 * 14 11 10 17 17 C 1.46509 * 119.99663 * 180.02562 * 16 14 11 18 18 C 1.50706 * 109.46683 * 180.02562 * 17 16 14 19 19 C 1.38163 * 120.02719 * 259.97425 * 18 17 16 20 20 C 1.38243 * 120.05442 * 180.02562 * 19 18 17 21 21 C 1.38289 * 120.11362 * 0.02562 * 20 19 18 22 22 C 1.38125 * 120.05159 * 359.97438 * 21 20 19 23 23 C 1.38708 * 120.02782 * 80.00212 * 18 17 16 24 24 O 1.35898 * 120.05505 * 359.97438 * 23 18 17 25 25 C 1.42904 * 116.99940 * 179.97438 * 24 23 18 26 26 C 1.53002 * 109.47009 * 179.97438 * 25 24 23 27 27 O 1.42903 * 109.47271 * 65.00145 * 26 25 24 28 28 H 0.97004 * 120.00488 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47643 * 59.99470 * 9 7 2 30 30 H 1.09008 * 109.47291 * 299.99789 * 9 7 2 31 31 H 1.08999 * 109.47274 * 59.99912 * 10 9 7 32 32 H 1.08996 * 109.46790 * 299.99592 * 10 9 7 33 33 H 1.00902 * 110.99677 * 296.04014 * 13 11 10 34 34 H 1.00896 * 111.00266 * 59.99817 * 13 11 10 35 35 H 0.96997 * 120.00408 * 0.02562 * 16 14 11 36 36 H 1.08993 * 109.46757 * 60.00448 * 17 16 14 37 37 H 1.08998 * 109.46796 * 300.00373 * 17 16 14 38 38 H 1.08001 * 119.97035 * 0.03182 * 19 18 17 39 39 H 1.08004 * 119.94085 * 180.02562 * 20 19 18 40 40 H 1.07993 * 119.96940 * 180.27537 * 21 20 19 41 41 H 1.08000 * 120.02369 * 180.02562 * 22 21 20 42 42 H 1.08999 * 109.47040 * 299.99833 * 25 24 23 43 43 H 1.08995 * 109.47340 * 59.99861 * 25 24 23 44 44 H 1.09005 * 109.47018 * 184.99935 * 26 25 24 45 45 H 1.08996 * 109.47457 * 304.99649 * 26 25 24 46 46 H 0.96700 * 113.99903 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 6 4.0214 -2.6367 -0.0023 11 6 5.5514 -2.6366 -0.0022 12 1 5.9148 -2.0466 -0.8436 13 7 6.0411 -2.0524 1.2535 14 6 6.0538 -4.0520 -0.1272 15 8 6.4278 -4.6519 0.8583 16 7 6.0873 -4.6511 -1.3340 17 6 6.5751 -6.0272 -1.4553 18 6 6.5105 -6.4576 -2.8982 19 6 5.4637 -7.2442 -3.3389 20 6 5.4042 -7.6397 -4.6622 21 6 6.3920 -7.2499 -5.5479 22 6 7.4406 -6.4635 -5.1123 23 6 7.5024 -6.0648 -3.7847 24 8 8.5331 -5.2911 -3.3537 25 6 9.5186 -4.9251 -4.3217 26 6 10.5910 -4.0605 -3.6559 27 8 11.2897 -4.8359 -2.6798 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6805 0.8888 30 1 3.8745 -0.6801 -0.8912 31 1 3.6578 -3.1499 -0.8924 32 1 3.6585 -3.1510 0.8875 33 1 5.7717 -1.0830 1.3305 34 1 5.7176 -2.5819 2.0491 35 1 5.7884 -4.1712 -2.1222 36 1 5.9536 -6.6876 -0.8507 37 1 7.6066 -6.0790 -1.1068 38 1 4.6911 -7.5502 -2.6490 39 1 4.5847 -8.2543 -5.0048 40 1 6.3408 -7.5565 -6.5822 41 1 8.2116 -6.1589 -5.8045 42 1 9.9786 -5.8250 -4.7300 43 1 9.0460 -4.3617 -5.1262 44 1 11.2939 -3.7080 -4.4109 45 1 10.1194 -3.2057 -3.1713 46 1 11.9863 -4.3504 -2.2170 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424124499.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:25 Heat of formation + Delta-G solvation = -138.870118 kcal Electronic energy + Delta-G solvation = -26986.880081 eV Core-core repulsion = 23068.056538 eV Total energy + Delta-G solvation = -3918.823543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.45295 -40.70197 -38.77408 -37.36333 -37.19179 -35.98018 -34.80746 -32.58162 -32.07891 -31.49577 -30.21998 -28.73595 -27.08526 -25.02526 -24.63607 -22.65592 -22.28328 -22.12314 -21.17121 -19.32392 -19.06820 -18.58704 -18.35447 -17.38662 -17.13937 -16.71687 -16.45327 -16.21350 -16.02529 -15.94791 -15.54474 -15.47370 -15.16606 -14.97556 -14.73955 -14.58075 -14.39113 -13.99525 -13.69669 -13.58621 -13.44067 -13.41538 -13.06069 -12.69720 -12.45763 -12.32035 -12.11484 -11.93055 -11.85309 -11.76559 -11.69017 -11.40910 -11.00927 -10.86161 -10.77121 -10.11798 -9.91858 -9.65009 -9.15576 -8.29679 -6.35247 0.23490 0.46155 1.38032 1.40564 1.51801 1.63142 2.19898 2.21150 2.36621 2.85039 3.05820 3.30668 3.61135 3.72607 3.80759 3.82611 3.95884 4.09309 4.13312 4.17078 4.18441 4.27697 4.33721 4.43214 4.53241 4.57145 4.61119 4.62207 4.72235 4.74179 4.84546 4.94586 5.00796 5.33605 5.35426 5.39181 5.46361 5.47674 5.56990 5.62648 5.83690 6.06030 6.25547 6.42248 6.49388 6.55181 6.73109 6.84684 7.23636 7.29484 8.87205 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.002974 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.336729 B = 9412.122294 C =10236.098232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.239 1.239 7 C -0.535 4.535 8 H 0.026 0.974 9 C -0.005 4.005 10 C -0.118 4.118 11 C 0.084 3.916 12 H 0.117 0.883 13 N -0.830 5.830 14 C 0.524 3.476 15 O -0.575 6.575 16 N -0.710 5.710 17 C 0.180 3.820 18 C -0.158 4.158 19 C -0.069 4.069 20 C -0.164 4.164 21 C -0.070 4.070 22 C -0.216 4.216 23 C 0.134 3.866 24 O -0.322 6.322 25 C 0.049 3.951 26 C 0.074 3.926 27 O -0.595 6.595 28 H 0.266 0.734 29 H 0.026 0.974 30 H 0.030 0.970 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.355 0.645 34 H 0.345 0.655 35 H 0.409 0.591 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.053 0.947 46 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.112 -11.078 -15.432 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.215 1.215 6 H -0.162 1.162 7 C -0.573 4.573 8 H 0.044 0.956 9 C -0.043 4.043 10 C -0.157 4.157 11 C -0.032 4.032 12 H 0.134 0.866 13 N -0.361 5.361 14 C 0.311 3.689 15 O -0.454 6.454 16 N -0.361 5.361 17 C 0.057 3.943 18 C -0.159 4.159 19 C -0.088 4.088 20 C -0.182 4.182 21 C -0.088 4.088 22 C -0.234 4.234 23 C 0.088 3.912 24 O -0.236 6.236 25 C -0.026 4.026 26 C -0.003 4.003 27 O -0.404 6.404 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.244 0.756 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.091 0.909 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.071 0.929 46 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 22.635 -11.941 -15.011 29.670 hybrid contribution -1.145 1.298 0.106 1.734 sum 21.491 -10.644 -14.905 28.237 Atomic orbital electron populations 1.70081 1.08545 1.28250 1.52488 1.26086 0.95633 1.03795 0.93941 0.85596 0.79672 0.77661 0.79343 1.18933 1.21491 1.16156 1.21441 0.92174 0.92949 1.50747 0.95551 1.19500 0.93846 0.93719 0.97224 1.22014 0.93367 0.98817 1.01551 1.21402 0.93361 0.92179 0.96228 0.86552 1.58737 1.66530 1.07613 1.03264 1.20804 0.76637 0.88654 0.82823 1.90623 1.49434 1.66862 1.38444 1.45920 1.65654 1.15173 1.09381 1.19815 0.99230 0.82490 0.92787 1.19187 0.97097 1.05253 0.94338 1.21167 0.95765 0.94859 0.97009 1.21374 1.00885 1.02947 0.92976 1.21378 0.92243 0.94339 1.00881 1.21510 1.02894 1.04771 0.94269 1.19042 0.87719 0.91482 0.92995 1.86189 1.33122 1.64872 1.39407 1.23201 0.87868 1.00186 0.91350 1.22363 0.93020 0.92775 0.92189 1.86503 1.54339 1.43129 1.56415 0.92505 0.95573 0.95206 0.91867 0.93908 0.83011 0.84175 0.75560 0.91460 0.92444 0.84548 0.83613 0.82878 0.83294 0.90890 0.88268 0.88227 0.92885 0.75212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 2 C 0.00 0.12 5.47 84.66 0.46 0.58 16 3 Si 0.95 42.75 27.47 68.60 1.88 44.63 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.24 -9.59 6.54 99.48 0.65 -8.94 16 7 C -0.54 -30.35 9.66 25.60 0.25 -30.11 16 8 H 0.03 1.67 7.99 -2.91 -0.02 1.65 16 9 C -0.01 -0.24 3.81 29.85 0.11 -0.12 16 10 C -0.12 -4.48 4.78 30.60 0.15 -4.33 16 11 C 0.08 2.69 3.21 44.17 0.14 2.83 16 12 H 0.12 3.27 8.14 -2.39 -0.02 3.26 16 13 N -0.83 -26.69 8.94 -171.79 -1.54 -28.22 16 14 C 0.52 17.77 7.08 87.66 0.62 18.40 16 15 O -0.57 -23.47 16.25 -3.05 -0.05 -23.52 16 16 N -0.71 -19.89 5.55 -466.76 -2.59 -22.48 16 17 C 0.18 4.87 5.46 85.63 0.47 5.34 16 18 C -0.16 -3.56 5.26 -19.77 -0.10 -3.67 16 19 C -0.07 -1.34 9.67 22.25 0.22 -1.13 16 20 C -0.16 -2.54 10.04 22.28 0.22 -2.31 16 21 C -0.07 -0.97 10.04 22.25 0.22 -0.74 16 22 C -0.22 -3.40 9.04 22.36 0.20 -3.19 16 23 C 0.13 2.82 6.66 22.50 0.15 2.97 16 24 O -0.32 -7.17 9.34 -87.77 -0.82 -7.99 16 25 C 0.05 0.69 5.12 71.98 0.37 1.06 16 26 C 0.07 0.94 7.43 71.98 0.53 1.47 16 27 O -0.60 -10.35 13.63 -144.35 -1.97 -12.32 16 28 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.03 1.10 5.93 -2.39 -0.01 1.09 16 30 H 0.03 1.23 7.57 -2.38 -0.02 1.21 16 31 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.35 10.64 7.55 -89.69 -0.68 9.96 16 34 H 0.35 11.63 8.58 -89.70 -0.77 10.86 16 35 H 0.41 10.00 8.46 -92.71 -0.78 9.22 16 36 H 0.07 1.85 8.00 -2.39 -0.02 1.83 16 37 H 0.06 1.78 7.85 -2.39 -0.02 1.76 16 38 H 0.14 2.39 8.04 -2.91 -0.02 2.37 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.15 1.58 6.30 -2.91 -0.02 1.56 16 42 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 43 H 0.10 0.90 7.66 -2.39 -0.02 0.88 16 44 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.40 3.39 9.12 -74.06 -0.68 2.71 16 Total: -1.00 -79.02 384.45 -2.69 -81.71 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -1.93 Total: 40.42 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 4.01 Total: -12.96 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -3.83 Total: -109.97 kcal Atomic # 8 Polarization: -40.99 SS G_CDS: -2.84 Total: -43.83 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Total: -79.02 -2.69 -81.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424124499.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.156 kcal (2) G-P(sol) polarization free energy of solvation -79.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds