Wall clock time and date at job start Fri Apr 10 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00477 * 2 1 4 4 H 1.48500 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47003 * 300.00368 * 3 2 1 6 6 H 1.48503 * 109.46914 * 60.00116 * 3 2 1 7 7 C 1.37884 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99864 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.88758 * 59.29734 * 9 7 2 11 11 C 1.55151 * 111.00236 * 295.41676 * 9 7 2 12 12 C 1.54430 * 102.89556 * 206.40906 * 11 9 7 13 13 N 1.47030 * 107.27955 * 22.18739 * 12 11 9 14 14 C 1.34774 * 125.64740 * 181.09689 * 13 12 11 15 15 O 1.21282 * 119.99512 * 174.98592 * 14 13 12 16 16 C 1.50692 * 120.00107 * 354.99223 * 14 13 12 17 17 C 1.50708 * 112.84975 * 294.72685 * 16 14 13 18 18 O 1.21283 * 119.99952 * 124.50797 * 17 16 14 19 19 N 1.34772 * 119.99724 * 304.50794 * 17 16 14 20 20 C 1.46505 * 119.99666 * 175.00340 * 19 17 16 21 21 C 1.53003 * 117.49948 * 223.62230 * 20 19 17 22 22 C 1.52999 * 60.00131 * 252.51602 * 21 20 19 23 23 C 1.53778 * 113.61521 * 163.53435 * 16 14 13 24 24 C 1.53957 * 87.02091 * 220.04435 * 23 16 14 25 25 C 1.53783 * 87.11156 * 25.36286 * 24 23 16 26 26 C 1.47427 * 108.69948 * 1.06034 * 13 12 11 27 27 H 0.97002 * 119.99332 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00390 * 300.70673 * 10 9 7 29 29 H 1.09004 * 110.72422 * 324.74817 * 11 9 7 30 30 H 1.08996 * 110.72261 * 88.02264 * 11 9 7 31 31 H 1.08997 * 109.87399 * 262.77091 * 12 11 9 32 32 H 1.08994 * 110.00886 * 141.67896 * 12 11 9 33 33 H 0.97001 * 120.00506 * 355.00732 * 19 17 16 34 34 H 1.09000 * 115.55271 * 9.33314 * 20 19 17 35 35 H 1.09001 * 117.49665 * 0.02562 * 21 20 19 36 36 H 1.08991 * 117.50007 * 145.02148 * 21 20 19 37 37 H 1.09003 * 117.49328 * 252.51745 * 22 21 20 38 38 H 1.08993 * 117.52397 * 107.48195 * 22 21 20 39 39 H 1.09005 * 113.61611 * 334.56321 * 23 16 14 40 40 H 1.09002 * 113.62092 * 105.46773 * 23 16 14 41 41 H 1.08995 * 113.53910 * 270.81250 * 24 23 16 42 42 H 1.09007 * 113.74158 * 139.93832 * 24 23 16 43 43 H 1.08998 * 113.61413 * 220.09089 * 25 24 23 44 44 H 1.08999 * 113.61755 * 89.18509 * 25 24 23 45 45 H 1.09008 * 110.36492 * 217.03266 * 26 13 12 46 46 H 1.09001 * 110.36370 * 94.71274 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4063 -2.5988 -1.1500 11 6 0.4340 -2.6708 1.3061 12 6 0.3264 -4.2049 1.4466 13 7 1.4275 -4.7928 0.6695 14 6 1.6684 -6.1106 0.5218 15 8 2.5535 -6.4860 -0.2176 16 6 0.8380 -7.1175 1.2751 17 6 1.0295 -7.0346 2.7677 18 8 0.0715 -6.8742 3.4939 19 7 2.2653 -7.1386 3.2953 20 6 2.4657 -6.9489 4.7341 21 6 3.6617 -6.1028 5.1753 22 6 3.6838 -7.6199 5.3721 23 6 0.9482 -8.5468 0.7185 24 6 -0.5650 -8.6758 0.9713 25 6 -0.6379 -7.1450 0.8440 26 6 2.2237 -3.7021 0.0781 27 1 -0.4849 0.8401 0.0004 28 1 -0.2522 -1.8937 -1.2163 29 1 0.9687 -2.2424 2.1539 30 1 -0.5541 -2.2218 1.2053 31 1 -0.6301 -4.5470 1.0515 32 1 0.4182 -4.4908 2.4943 33 1 3.0220 -7.3389 2.7224 34 1 1.5560 -6.8851 5.3311 35 1 4.2991 -5.6869 4.3950 36 1 3.5389 -5.4819 6.0626 37 1 3.5755 -7.9971 6.3890 38 1 4.3357 -8.2027 4.7215 39 1 1.2194 -8.5848 -0.3366 40 1 1.5532 -9.2106 1.3361 41 1 -0.8100 -9.0432 1.9677 42 1 -1.0982 -9.2054 0.1817 43 1 -1.3115 -6.6787 1.5629 44 1 -0.8011 -6.7989 -0.1767 45 1 2.5661 -3.9799 -0.9188 46 1 3.0724 -3.4618 0.7184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592841227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:24 Heat of formation + Delta-G solvation = -70.067074 kcal Electronic energy + Delta-G solvation = -29069.160024 eV Core-core repulsion = 25153.320005 eV Total energy + Delta-G solvation = -3915.840019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.21821 -39.09896 -38.00662 -37.18263 -36.37547 -34.33818 -32.94773 -32.20844 -30.01549 -28.54577 -27.31817 -25.78326 -24.89631 -23.06658 -22.60149 -22.34611 -21.17925 -20.08083 -19.58056 -19.08507 -17.58734 -17.10242 -16.74051 -16.09006 -15.65211 -15.20813 -14.98379 -14.83959 -14.74734 -14.51552 -14.23205 -13.85368 -13.42720 -13.06325 -12.90220 -12.50416 -12.45013 -12.14861 -12.04943 -11.83815 -11.78617 -11.54904 -11.36021 -11.35428 -11.23672 -11.04248 -10.91999 -10.74242 -10.61350 -10.49160 -10.44464 -10.05511 -9.96167 -9.46820 -9.31069 -8.91815 -8.71372 -8.23828 -8.05346 -6.31916 -4.39879 2.34230 2.73429 2.98007 3.16748 3.25880 3.29343 3.41281 3.70173 4.24048 4.40889 4.45341 4.51505 4.57868 4.70983 4.73151 4.77597 4.78648 4.96499 5.28680 5.39291 5.54478 5.57226 5.59136 5.72451 5.72977 5.74295 5.81051 5.86223 5.86741 5.94107 6.00841 6.03899 6.25560 6.30257 6.33233 6.38642 6.58750 6.84909 6.92517 7.27506 7.28949 7.31262 7.70609 7.95381 8.00354 8.07148 8.46254 8.62771 9.28591 9.39950 10.75812 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004188 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.408909 B = 6684.121158 C = 7698.977015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.250 3.750 10 O -0.583 6.583 11 C -0.136 4.136 12 C 0.098 3.902 13 N -0.596 5.596 14 C 0.540 3.460 15 O -0.547 6.547 16 C -0.134 4.134 17 C 0.557 3.443 18 O -0.524 6.524 19 N -0.699 5.699 20 C 0.080 3.920 21 C -0.191 4.191 22 C -0.189 4.189 23 C -0.102 4.102 24 C -0.140 4.140 25 C -0.107 4.107 26 C 0.119 3.881 27 H 0.268 0.732 28 H 0.383 0.617 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.405 0.595 34 H 0.139 0.861 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.072 0.928 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -14.234 7.900 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.209 3.791 10 O -0.392 6.392 11 C -0.175 4.175 12 C -0.025 4.025 13 N -0.327 5.327 14 C 0.327 3.673 15 O -0.426 6.426 16 C -0.140 4.140 17 C 0.343 3.657 18 O -0.400 6.400 19 N -0.348 5.348 20 C -0.026 4.026 21 C -0.230 4.230 22 C -0.228 4.228 23 C -0.140 4.140 24 C -0.178 4.178 25 C -0.145 4.145 26 C -0.003 4.003 27 H 0.078 0.922 28 H 0.234 0.766 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.240 0.760 34 H 0.157 0.843 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.121 0.879 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.091 0.909 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.486 -14.768 7.916 16.822 hybrid contribution 0.537 1.510 -0.015 1.603 sum 2.023 -13.258 7.901 15.565 Atomic orbital electron populations 1.69660 1.05986 1.27627 1.50178 1.24986 0.95006 0.99538 0.93407 0.86363 0.80143 0.82733 0.77746 1.19588 1.20731 1.20810 1.21487 0.93748 0.90169 1.52030 0.91663 1.19579 0.86502 0.90662 0.82362 1.86112 1.51465 1.54818 1.46819 1.23203 1.03176 0.89890 1.01182 1.22290 0.89259 0.96869 0.94065 1.48577 1.29966 1.04654 1.49499 1.19376 0.83838 0.81685 0.82424 1.90670 1.33616 1.79127 1.39222 1.22301 1.00459 0.98504 0.92732 1.19447 0.82710 0.75152 0.88432 1.90686 1.39780 1.48261 1.61244 1.45320 1.09669 1.72000 1.07858 1.21609 0.94688 1.04167 0.82142 1.23440 1.01894 0.93672 1.03961 1.23373 1.01102 0.95833 1.02460 1.22845 0.97183 0.91185 1.02745 1.22913 0.95910 0.96406 1.02536 1.22836 0.91883 0.97054 1.02764 1.22425 0.94134 0.85677 0.98026 0.92171 0.76586 0.91466 0.89619 0.92010 0.92791 0.76020 0.84342 0.88256 0.87801 0.87871 0.88482 0.87870 0.90858 0.89723 0.90480 0.89058 0.88716 0.90919 0.91035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.86 10.76 55.43 0.60 -22.26 16 2 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -13.79 8.25 -34.44 -0.28 -14.07 16 8 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 9 C 0.25 5.96 0.88 -89.63 -0.08 5.88 16 10 O -0.58 -14.73 13.17 -35.23 -0.46 -15.20 16 11 C -0.14 -2.96 5.52 -24.84 -0.14 -3.10 16 12 C 0.10 1.87 5.94 -3.00 -0.02 1.86 16 13 N -0.60 -11.74 3.33 -170.45 -0.57 -12.31 16 14 C 0.54 9.89 6.65 -10.99 -0.07 9.82 16 15 O -0.55 -11.22 16.37 5.56 0.09 -11.13 16 16 C -0.13 -1.97 0.63 -156.00 -0.10 -2.07 16 17 C 0.56 8.22 5.31 -10.98 -0.06 8.16 16 18 O -0.52 -8.80 15.17 5.55 0.08 -8.72 16 19 N -0.70 -8.81 5.47 -53.80 -0.29 -9.10 16 20 C 0.08 0.88 6.44 -67.92 -0.44 0.44 16 21 C -0.19 -1.85 10.46 -26.73 -0.28 -2.13 16 22 C -0.19 -1.57 10.46 -26.73 -0.28 -1.85 16 23 C -0.10 -1.24 6.90 -25.83 -0.18 -1.42 16 24 C -0.14 -1.57 7.81 -25.83 -0.20 -1.77 16 25 C -0.11 -1.47 5.58 -25.91 -0.14 -1.62 16 26 C 0.12 2.62 6.11 -2.53 -0.02 2.60 16 27 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 28 H 0.38 9.74 7.25 45.56 0.33 10.07 16 29 H 0.07 1.48 8.03 -51.93 -0.42 1.07 16 30 H 0.09 1.96 7.68 -51.93 -0.40 1.56 16 31 H 0.06 1.15 7.00 -51.93 -0.36 0.78 16 32 H 0.05 1.00 6.94 -51.93 -0.36 0.64 16 33 H 0.40 4.76 8.76 -40.82 -0.36 4.40 16 34 H 0.14 1.64 7.39 -51.93 -0.38 1.25 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.32 7.71 -51.93 -0.40 0.92 16 40 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 43 H 0.09 1.31 7.20 -51.93 -0.37 0.94 16 44 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16 45 H 0.07 1.69 7.99 -51.92 -0.41 1.28 16 46 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -28.77 372.45 -8.82 -37.59 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -6.48 Total: 18.03 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -2.38 Total: 2.51 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.26 Total: -43.67 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -0.29 Total: -35.04 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.77 -8.82 -37.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.480 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds