Wall clock time and date at job start Fri Apr 10 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00477 * 2 1 4 4 H 1.48500 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47003 * 300.00368 * 3 2 1 6 6 H 1.48503 * 109.46914 * 60.00116 * 3 2 1 7 7 C 1.37884 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99864 * 0.02562 * 7 2 1 10 10 O 1.42897 * 110.88758 * 59.29734 * 9 7 2 11 11 C 1.55151 * 111.00236 * 295.41676 * 9 7 2 12 12 C 1.54430 * 102.89556 * 206.40906 * 11 9 7 13 13 N 1.47030 * 107.27955 * 22.18739 * 12 11 9 14 14 C 1.34774 * 125.64740 * 181.09689 * 13 12 11 15 15 O 1.21282 * 119.99512 * 174.98592 * 14 13 12 16 16 C 1.50692 * 120.00107 * 354.99223 * 14 13 12 17 17 C 1.50708 * 112.84975 * 294.72685 * 16 14 13 18 18 O 1.21283 * 119.99952 * 124.50797 * 17 16 14 19 19 N 1.34772 * 119.99724 * 304.50794 * 17 16 14 20 20 C 1.46505 * 119.99666 * 175.00340 * 19 17 16 21 21 C 1.53003 * 117.49948 * 223.62230 * 20 19 17 22 22 C 1.52999 * 60.00131 * 252.51602 * 21 20 19 23 23 C 1.53778 * 113.61521 * 163.53435 * 16 14 13 24 24 C 1.53957 * 87.02091 * 220.04435 * 23 16 14 25 25 C 1.53783 * 87.11156 * 25.36286 * 24 23 16 26 26 C 1.47427 * 108.69948 * 1.06034 * 13 12 11 27 27 H 0.97002 * 119.99332 * 359.97438 * 1 2 3 28 28 H 0.96698 * 114.00390 * 300.70673 * 10 9 7 29 29 H 1.09004 * 110.72422 * 324.74817 * 11 9 7 30 30 H 1.08996 * 110.72261 * 88.02264 * 11 9 7 31 31 H 1.08997 * 109.87399 * 262.77091 * 12 11 9 32 32 H 1.08994 * 110.00886 * 141.67896 * 12 11 9 33 33 H 0.97001 * 120.00506 * 355.00732 * 19 17 16 34 34 H 1.09000 * 115.55271 * 9.33314 * 20 19 17 35 35 H 1.09001 * 117.49665 * 0.02562 * 21 20 19 36 36 H 1.08991 * 117.50007 * 145.02148 * 21 20 19 37 37 H 1.09003 * 117.49328 * 252.51745 * 22 21 20 38 38 H 1.08993 * 117.52397 * 107.48195 * 22 21 20 39 39 H 1.09005 * 113.61611 * 334.56321 * 23 16 14 40 40 H 1.09002 * 113.62092 * 105.46773 * 23 16 14 41 41 H 1.08995 * 113.53910 * 270.81250 * 24 23 16 42 42 H 1.09007 * 113.74158 * 139.93832 * 24 23 16 43 43 H 1.08998 * 113.61413 * 220.09089 * 25 24 23 44 44 H 1.08999 * 113.61755 * 89.18509 * 25 24 23 45 45 H 1.09008 * 110.36492 * 217.03266 * 26 13 12 46 46 H 1.09001 * 110.36370 * 94.71274 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 8 0.4063 -2.5988 -1.1500 11 6 0.4340 -2.6708 1.3061 12 6 0.3264 -4.2049 1.4466 13 7 1.4275 -4.7928 0.6695 14 6 1.6684 -6.1106 0.5218 15 8 2.5535 -6.4860 -0.2176 16 6 0.8380 -7.1175 1.2751 17 6 1.0295 -7.0346 2.7677 18 8 0.0715 -6.8742 3.4939 19 7 2.2653 -7.1386 3.2953 20 6 2.4657 -6.9489 4.7341 21 6 3.6617 -6.1028 5.1753 22 6 3.6838 -7.6199 5.3721 23 6 0.9482 -8.5468 0.7185 24 6 -0.5650 -8.6758 0.9713 25 6 -0.6379 -7.1450 0.8440 26 6 2.2237 -3.7021 0.0781 27 1 -0.4849 0.8401 0.0004 28 1 -0.2522 -1.8937 -1.2163 29 1 0.9687 -2.2424 2.1539 30 1 -0.5541 -2.2218 1.2053 31 1 -0.6301 -4.5470 1.0515 32 1 0.4182 -4.4908 2.4943 33 1 3.0220 -7.3389 2.7224 34 1 1.5560 -6.8851 5.3311 35 1 4.2991 -5.6869 4.3950 36 1 3.5389 -5.4819 6.0626 37 1 3.5755 -7.9971 6.3890 38 1 4.3357 -8.2027 4.7215 39 1 1.2194 -8.5848 -0.3366 40 1 1.5532 -9.2106 1.3361 41 1 -0.8100 -9.0432 1.9677 42 1 -1.0982 -9.2054 0.1817 43 1 -1.3115 -6.6787 1.5629 44 1 -0.8011 -6.7989 -0.1767 45 1 2.5661 -3.9799 -0.9188 46 1 3.0724 -3.4618 0.7184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592841227.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:22 Heat of formation + Delta-G solvation = -89.789897 kcal Electronic energy + Delta-G solvation = -29070.015270 eV Core-core repulsion = 25153.320005 eV Total energy + Delta-G solvation = -3916.695265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.44249 -40.51002 -39.32922 -38.47690 -37.51837 -36.14846 -34.19354 -33.95354 -31.73335 -30.24109 -28.67625 -27.01021 -26.47784 -24.36313 -23.68937 -23.30498 -22.15151 -21.74644 -21.05697 -20.28891 -19.25648 -18.79999 -17.71257 -17.28870 -17.16816 -16.91781 -16.51494 -16.22258 -16.04097 -15.64911 -15.53979 -15.29497 -14.81839 -14.70043 -14.09777 -13.83288 -13.78214 -13.67316 -13.50178 -13.24758 -13.14887 -13.09157 -12.67535 -12.59400 -12.52161 -12.42955 -12.40971 -12.25799 -12.01026 -11.94611 -11.52584 -11.48320 -11.32826 -11.09239 -10.79126 -10.63765 -10.18185 -9.85706 -9.68896 -8.26093 -6.41086 1.15157 1.39955 1.40664 1.44961 1.54653 1.87685 1.92263 2.38847 2.91847 2.98793 3.28130 3.31507 3.44958 3.51327 3.72836 3.75418 3.76709 3.94790 4.01221 4.01658 4.22508 4.24466 4.33555 4.53903 4.59068 4.61903 4.72157 4.73494 4.74559 4.81124 4.90518 4.95571 4.99094 5.00337 5.08466 5.16789 5.17417 5.33288 5.38548 5.39324 5.45640 5.74558 6.03353 6.25047 6.45892 6.63046 6.92548 6.96904 7.29809 7.39367 8.80498 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014243 B = 0.004188 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.408909 B = 6684.121158 C = 7698.977015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.037 3.963 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.058 0.942 9 C 0.238 3.762 10 O -0.592 6.592 11 C -0.126 4.126 12 C 0.113 3.887 13 N -0.600 5.600 14 C 0.541 3.459 15 O -0.570 6.570 16 C -0.136 4.136 17 C 0.557 3.443 18 O -0.548 6.548 19 N -0.692 5.692 20 C 0.053 3.947 21 C -0.194 4.194 22 C -0.161 4.161 23 C -0.096 4.096 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.125 3.875 27 H 0.272 0.728 28 H 0.380 0.620 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.409 0.591 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.054 0.946 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 -15.430 8.969 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.165 4.165 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.599 4.599 8 H 0.076 0.924 9 C 0.198 3.802 10 O -0.401 6.401 11 C -0.165 4.165 12 C -0.009 4.009 13 N -0.331 5.331 14 C 0.329 3.671 15 O -0.450 6.450 16 C -0.142 4.142 17 C 0.342 3.658 18 O -0.425 6.425 19 N -0.341 5.341 20 C -0.052 4.052 21 C -0.232 4.232 22 C -0.199 4.199 23 C -0.134 4.134 24 C -0.160 4.160 25 C -0.152 4.152 26 C 0.003 3.997 27 H 0.081 0.919 28 H 0.230 0.770 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.244 0.756 34 H 0.147 0.853 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.910 -15.987 8.999 18.445 hybrid contribution 0.448 1.893 -0.361 1.978 sum 2.358 -14.094 8.638 16.698 Atomic orbital electron populations 1.69726 1.06758 1.28406 1.49891 1.25620 0.95804 1.02100 0.92935 0.85463 0.78904 0.79217 0.77756 1.19621 1.20582 1.20196 1.21707 0.93684 0.91468 1.53069 0.92364 1.19728 0.86882 0.90931 0.82679 1.86101 1.51560 1.54648 1.47783 1.22994 1.01890 0.91713 0.99856 1.22113 0.89403 0.94887 0.94515 1.48601 1.29909 1.04945 1.49691 1.20004 0.83599 0.81435 0.82016 1.90652 1.34703 1.79372 1.40273 1.22425 1.00416 0.98736 0.92657 1.19394 0.83096 0.75162 0.88137 1.90675 1.40576 1.49687 1.61593 1.45320 1.09057 1.70940 1.08760 1.21746 0.95350 1.06916 0.81193 1.23480 1.00737 0.95038 1.03988 1.23460 0.98458 0.94735 1.03248 1.22880 0.98426 0.89473 1.02598 1.22841 0.95141 0.94363 1.03611 1.22886 0.90843 0.99317 1.02111 1.22201 0.94169 0.85988 0.97361 0.91884 0.77015 0.92059 0.90864 0.91315 0.91892 0.75566 0.85309 0.89107 0.86914 0.85888 0.87499 0.88363 0.89040 0.89269 0.88177 0.89816 0.89303 0.92743 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.54 10.76 21.45 0.23 -46.31 16 2 C 0.04 1.87 5.29 84.66 0.45 2.31 16 3 Si 0.96 40.87 29.54 68.60 2.03 42.89 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.56 -29.24 8.25 25.60 0.21 -29.03 16 8 H 0.06 3.04 7.78 -2.91 -0.02 3.01 16 9 C 0.24 11.58 0.88 -10.15 -0.01 11.57 16 10 O -0.59 -30.53 13.17 -148.98 -1.96 -32.49 16 11 C -0.13 -5.55 5.52 31.82 0.18 -5.38 16 12 C 0.11 4.34 5.94 86.76 0.52 4.85 16 13 N -0.60 -23.72 3.33 -811.57 -2.70 -26.42 16 14 C 0.54 19.63 6.65 87.65 0.58 20.21 16 15 O -0.57 -23.26 16.37 -3.04 -0.05 -23.30 16 16 C -0.14 -3.87 0.63 -53.15 -0.03 -3.90 16 17 C 0.56 15.83 5.31 87.66 0.47 16.29 16 18 O -0.55 -17.91 15.17 -3.04 -0.05 -17.96 16 19 N -0.69 -16.59 5.47 -442.51 -2.42 -19.01 16 20 C 0.05 1.10 6.44 44.99 0.29 1.39 16 21 C -0.19 -3.46 10.46 30.60 0.32 -3.14 16 22 C -0.16 -2.26 10.46 30.60 0.32 -1.94 16 23 C -0.10 -2.15 6.90 31.18 0.22 -1.93 16 24 C -0.12 -2.44 7.81 31.18 0.24 -2.20 16 25 C -0.11 -2.99 5.58 31.12 0.17 -2.81 16 26 C 0.13 5.61 6.11 86.85 0.53 6.14 16 27 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 28 H 0.38 19.74 7.25 -74.06 -0.54 19.20 16 29 H 0.06 2.74 8.03 -2.38 -0.02 2.72 16 30 H 0.07 3.40 7.68 -2.39 -0.02 3.38 16 31 H 0.07 2.54 7.00 -2.39 -0.02 2.52 16 32 H 0.06 2.31 6.94 -2.39 -0.02 2.30 16 33 H 0.41 9.07 8.76 -92.71 -0.81 8.26 16 34 H 0.13 2.94 7.39 -2.39 -0.02 2.92 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 2.34 7.71 -2.38 -0.02 2.32 16 40 H 0.09 1.71 8.09 -2.39 -0.02 1.70 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 2.34 7.20 -2.39 -0.02 2.32 16 44 H 0.09 2.42 8.09 -2.39 -0.02 2.41 16 45 H 0.05 2.61 7.99 -2.38 -0.02 2.59 16 46 H 0.08 3.27 8.03 -2.39 -0.02 3.25 16 Total: -1.00 -61.23 372.45 -0.81 -62.04 By element: Atomic # 1 Polarization: 48.45 SS G_CDS: -0.34 Total: 48.11 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 4.45 Total: 12.44 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -4.89 Total: -91.73 kcal Atomic # 8 Polarization: -71.70 SS G_CDS: -2.06 Total: -73.75 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Total: -61.23 -0.81 -62.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592841227.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.751 kcal (2) G-P(sol) polarization free energy of solvation -61.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds