Wall clock time and date at job start Fri Apr 10 2020 14:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99918 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99750 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99754 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00000 * 3 2 1 7 7 C 1.38812 * 120.00227 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.47279 * 135.92755 * 359.63588 * 9 7 2 11 11 C 1.52596 * 87.58125 * 153.92361 * 10 9 7 12 12 C 1.47285 * 135.92523 * 179.97438 * 9 7 2 13 13 C 1.53349 * 116.36129 * 269.05521 * 11 10 9 14 14 C 1.54771 * 103.67379 * 205.95292 * 13 11 10 15 15 C 1.54550 * 104.07566 * 359.13245 * 14 13 11 16 16 H 1.09001 * 110.32882 * 264.59842 * 15 14 13 17 17 C 1.53008 * 110.32406 * 142.48915 * 15 14 13 18 18 N 1.46498 * 109.47267 * 179.97438 * 17 15 14 19 19 C 1.34777 * 119.99851 * 179.97438 * 18 17 15 20 20 O 1.21281 * 120.00276 * 0.02562 * 19 18 17 21 21 C 1.50701 * 120.00066 * 180.02562 * 19 18 17 22 22 H 1.09000 * 115.50520 * 34.63002 * 21 19 18 23 23 C 1.52991 * 117.43341 * 180.02562 * 21 19 18 24 24 H 1.09003 * 119.81128 * 354.34957 * 23 21 19 25 25 C 1.54484 * 118.06638 * 198.08784 * 23 21 19 26 26 O 1.44425 * 104.80371 * 321.12834 * 25 23 21 27 27 C 1.44431 * 105.27611 * 319.48948 * 26 25 23 28 28 C 1.53002 * 117.43424 * 249.35319 * 21 19 18 29 29 H 1.08994 * 119.80697 * 4.62980 * 28 21 19 30 30 O 1.43095 * 116.34073 * 142.32996 * 11 10 9 31 31 H 0.97005 * 120.00046 * 0.02562 * 1 2 3 32 32 H 1.09005 * 113.51532 * 268.57404 * 10 9 7 33 33 H 1.08997 * 113.51862 * 39.16276 * 10 9 7 34 34 H 1.09002 * 113.51716 * 320.83527 * 12 9 7 35 35 H 1.09006 * 113.51048 * 91.35934 * 12 9 7 36 36 H 1.09005 * 110.58312 * 324.49549 * 13 11 10 37 37 H 1.09002 * 110.59005 * 87.40086 * 13 11 10 38 38 H 1.08996 * 110.51024 * 117.78629 * 14 13 11 39 39 H 1.09001 * 110.50688 * 240.35172 * 14 13 11 40 40 H 1.08997 * 109.47073 * 300.00521 * 17 15 14 41 41 H 1.09003 * 109.46571 * 60.00239 * 17 15 14 42 42 H 0.96999 * 119.99969 * 0.02562 * 18 17 15 43 43 H 1.08998 * 110.37404 * 79.96259 * 25 23 21 44 44 H 1.09000 * 110.37070 * 202.30015 * 25 23 21 45 45 H 1.09001 * 110.37556 * 159.33771 * 27 26 25 46 46 H 1.08998 * 110.37034 * 281.57104 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0907 -2.7922 0.0066 11 6 0.3435 -4.0894 -0.6696 12 6 1.6837 -3.8167 0.0005 13 6 0.3437 -4.0909 -2.2031 14 6 0.1491 -5.5825 -2.5676 15 6 0.0782 -6.2976 -1.1993 16 1 1.0589 -6.6853 -0.9234 17 6 -0.9473 -7.4322 -1.2451 18 7 -0.9988 -8.0969 0.0594 19 6 -1.8381 -9.1331 0.2550 20 8 -2.5504 -9.5156 -0.6490 21 6 -1.8916 -9.8165 1.5971 22 1 -1.7422 -9.1679 2.4603 23 6 -2.8648 -10.9865 1.7540 24 1 -3.5492 -11.2346 0.9428 25 6 -3.2536 -11.4216 3.1844 26 8 -2.0342 -11.3059 3.9497 27 6 -0.9917 -11.8011 3.0814 28 6 -1.3430 -11.2421 1.6846 29 1 -0.8665 -11.6936 0.8145 30 8 -0.3424 -5.2777 -0.2634 31 1 -0.4850 0.8401 -0.0004 32 1 -0.4970 -2.9384 1.0075 33 1 -0.7248 -2.1645 -0.6195 34 1 2.5411 -4.0502 -0.6307 35 1 1.7664 -4.2443 0.9998 36 1 -0.4820 -3.4917 -2.5871 37 1 1.2957 -3.7238 -2.5867 38 1 -0.7799 -5.7225 -3.1202 39 1 0.9964 -5.9474 -3.1481 40 1 -1.9294 -7.0248 -1.4848 41 1 -0.6569 -8.1537 -2.0088 42 1 -0.4294 -7.7907 0.7826 43 1 -4.0191 -10.7588 3.5878 44 1 -3.6053 -12.4533 3.1848 45 1 -0.0195 -11.4296 3.4056 46 1 -0.9953 -12.8909 3.0674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053647390.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:43:42 Heat of formation + Delta-G solvation = -52.662177 kcal Electronic energy + Delta-G solvation = -27068.087951 eV Core-core repulsion = 23153.002665 eV Total energy + Delta-G solvation = -3915.085286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.83047 -41.46387 -40.05078 -38.20331 -35.75539 -35.34349 -34.14080 -33.10422 -30.85487 -29.67179 -29.01758 -27.38987 -26.63148 -25.25366 -23.81569 -22.72661 -22.26921 -21.68890 -20.83327 -20.44854 -18.84437 -18.71535 -17.64482 -17.10325 -17.03234 -16.95074 -16.52951 -16.41420 -16.29096 -15.88211 -15.68701 -15.49360 -14.89117 -14.74687 -14.30705 -14.15358 -13.99097 -13.54260 -13.49318 -13.27818 -13.03735 -12.82868 -12.77504 -12.61876 -12.56862 -12.40378 -12.32221 -12.04914 -11.92245 -11.60030 -11.39654 -11.35689 -11.25367 -11.02318 -10.91521 -10.59522 -10.42795 -10.15975 -9.00506 -7.94725 -5.29912 1.32983 1.45442 1.48029 1.56604 1.97987 2.41424 2.52639 2.77288 2.97374 3.27019 3.45235 3.51624 3.54933 3.57822 3.69428 3.71913 3.76970 3.86153 4.03255 4.10848 4.13604 4.31289 4.41460 4.49665 4.51316 4.56508 4.69170 4.71924 4.77533 4.78791 4.83154 4.87435 4.88183 4.92940 4.98896 5.02644 5.10302 5.13690 5.17460 5.34639 5.37038 5.43749 5.75211 5.83664 6.07245 6.45680 6.84604 7.13276 7.54563 8.52946 9.23380 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.002293 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.295782 B =12207.740584 C =12886.271031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.984 3.016 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.266 1.266 7 C -0.229 4.229 8 H 0.091 0.909 9 N -0.629 5.629 10 C 0.165 3.835 11 C 0.073 3.927 12 C 0.109 3.891 13 C -0.110 4.110 14 C -0.134 4.134 15 C 0.063 3.937 16 H 0.095 0.905 17 C 0.132 3.868 18 N -0.711 5.711 19 C 0.545 3.455 20 O -0.581 6.581 21 C -0.158 4.158 22 H 0.130 0.870 23 C -0.172 4.172 24 H 0.128 0.872 25 C 0.072 3.928 26 O -0.395 6.395 27 C 0.071 3.929 28 C -0.158 4.158 29 H 0.136 0.864 30 O -0.369 6.369 31 H 0.250 0.750 32 H 0.010 0.990 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.415 0.585 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 -25.731 0.426 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.191 1.191 7 C -0.356 4.356 8 H 0.109 0.891 9 N -0.357 5.357 10 C 0.038 3.962 11 C 0.032 3.968 12 C -0.017 4.017 13 C -0.148 4.148 14 C -0.172 4.172 15 C 0.006 3.994 16 H 0.112 0.888 17 C 0.009 3.991 18 N -0.361 5.361 19 C 0.332 3.668 20 O -0.462 6.462 21 C -0.179 4.179 22 H 0.148 0.852 23 C -0.190 4.190 24 H 0.146 0.854 25 C -0.004 4.004 26 O -0.314 6.314 27 C -0.005 4.005 28 C -0.176 4.176 29 H 0.154 0.846 30 O -0.287 6.287 31 H 0.058 0.942 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.115 0.885 42 H 0.251 0.749 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.127 0.873 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.313 -25.602 0.180 25.636 hybrid contribution 0.314 1.670 0.206 1.712 sum -0.999 -23.932 0.385 23.956 Atomic orbital electron populations 1.70034 1.06673 1.25844 1.57714 1.25724 0.96580 1.01154 1.02607 0.84997 0.77578 0.78551 0.77693 1.20842 1.22257 1.19108 1.19326 0.90777 0.82204 1.43330 0.89086 1.45627 1.03294 1.00674 1.86085 1.21920 0.88234 0.89898 0.96100 1.23345 0.93319 0.85276 0.94824 1.22840 0.96352 0.84304 0.98174 1.22244 1.02767 0.97579 0.92164 1.22945 1.04756 0.92853 0.96646 1.23405 0.97844 0.88504 0.89687 0.88765 1.21477 0.99116 0.92981 0.85545 1.45830 1.42064 1.32735 1.15495 1.19799 0.78765 0.79653 0.88566 1.90674 1.43722 1.66217 1.45552 1.22023 1.07079 0.92674 0.96097 0.85201 1.24048 0.94052 1.00304 1.00625 0.85405 1.23113 0.87955 1.02362 0.87013 1.89173 1.17840 1.85592 1.38816 1.23166 0.92502 0.99490 0.85331 1.24110 0.97463 0.94666 1.01393 0.84635 1.88938 1.67425 1.19233 1.53140 0.94153 0.97199 0.93659 0.91873 0.93922 0.91889 0.90420 0.89476 0.87437 0.92232 0.88467 0.74919 0.88074 0.88758 0.87263 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.28 11.51 21.65 0.25 -58.03 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.98 45.42 29.55 68.60 2.03 47.45 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.23 -12.78 10.74 84.03 0.90 -11.87 16 8 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 9 N -0.63 -32.58 3.77 -740.28 -2.79 -35.37 16 10 C 0.16 8.22 6.98 83.59 0.58 8.80 16 11 C 0.07 2.76 1.39 -11.04 -0.02 2.74 16 12 C 0.11 4.36 8.18 83.49 0.68 5.04 16 13 C -0.11 -3.51 6.50 31.32 0.20 -3.30 16 14 C -0.13 -2.93 6.65 31.73 0.21 -2.72 16 15 C 0.06 1.44 3.35 31.12 0.10 1.55 16 16 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 17 C 0.13 2.87 5.28 86.38 0.46 3.32 16 18 N -0.71 -15.07 5.52 -463.05 -2.55 -17.63 16 19 C 0.54 12.82 7.61 87.66 0.67 13.49 16 20 O -0.58 -17.66 16.34 -3.03 -0.05 -17.71 16 21 C -0.16 -2.89 5.56 -11.54 -0.06 -2.95 16 22 H 0.13 2.31 8.06 -2.39 -0.02 2.29 16 23 C -0.17 -2.80 6.68 -9.79 -0.07 -2.86 16 24 H 0.13 2.32 7.82 -2.39 -0.02 2.30 16 25 C 0.07 0.96 7.53 72.49 0.55 1.50 16 26 O -0.40 -6.60 11.31 -148.98 -1.69 -8.28 16 27 C 0.07 0.81 7.54 72.49 0.55 1.36 16 28 C -0.16 -2.18 6.95 -9.79 -0.07 -2.25 16 29 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 30 O -0.37 -12.09 11.12 -148.98 -1.66 -13.74 16 31 H 0.25 14.79 8.31 -92.70 -0.77 14.01 16 32 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.05 2.52 7.13 -2.39 -0.02 2.50 16 34 H 0.06 2.26 8.06 -2.39 -0.02 2.24 16 35 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.06 2.19 8.12 -2.38 -0.02 2.17 16 37 H 0.08 2.53 7.92 -2.39 -0.02 2.51 16 38 H 0.09 1.75 7.87 -2.39 -0.02 1.73 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.41 7.69 8.47 -92.71 -0.79 6.90 16 43 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -73.78 376.04 -1.10 -74.88 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.20 Total: 19.98 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 5.16 Total: 8.46 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -5.09 Total: -111.03 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -3.39 Total: -39.73 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -73.78 -1.10 -74.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053647390.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.222 kcal (2) G-P(sol) polarization free energy of solvation -73.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds