Wall clock time and date at job start Fri Apr 10 2020 14:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47113 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99664 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00359 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99651 * 179.97438 * 13 12 11 16 16 N 1.46506 * 109.46877 * 180.02562 * 15 13 12 17 17 C 1.36049 * 123.27992 * 269.70560 * 16 15 13 18 18 O 1.21222 * 127.00190 * 347.26660 * 17 16 15 19 19 C 1.49717 * 105.93491 * 167.15843 * 17 16 15 20 20 H 1.09003 * 110.17622 * 275.51329 * 19 17 16 21 21 C 1.51309 * 119.87792 * 146.45553 * 19 17 16 22 22 C 1.54195 * 106.18379 * 181.51912 * 21 19 17 23 23 C 1.52476 * 111.87672 * 57.50553 * 22 21 19 24 24 C 1.52538 * 112.24031 * 307.26333 * 23 22 21 25 25 C 1.51043 * 107.45602 * 55.87529 * 24 23 22 26 26 H 1.08998 * 110.08066 * 54.11012 * 25 24 23 27 27 C 1.36052 * 123.28633 * 90.00562 * 16 15 13 28 28 O 1.21230 * 127.00698 * 347.37018 * 27 16 15 29 29 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 31 31 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 32 32 H 1.09005 * 109.47000 * 299.99228 * 10 9 7 33 33 H 1.08996 * 109.47876 * 59.99314 * 10 9 7 34 34 H 1.08997 * 109.46714 * 299.99832 * 11 10 9 35 35 H 1.09000 * 109.47156 * 59.99729 * 11 10 9 36 36 H 0.97006 * 119.99654 * 359.97438 * 12 11 10 37 37 H 1.08997 * 109.47561 * 300.00070 * 15 13 12 38 38 H 1.09000 * 109.46976 * 60.00376 * 15 13 12 39 39 H 1.09008 * 110.10599 * 300.68020 * 21 19 17 40 40 H 1.09004 * 110.10880 * 62.35445 * 21 19 17 41 41 H 1.09002 * 109.00193 * 178.11744 * 22 21 19 42 42 H 1.08993 * 109.00208 * 296.88873 * 22 21 19 43 43 H 1.09002 * 108.95322 * 67.63414 * 23 22 21 44 44 H 1.08998 * 108.95539 * 186.36495 * 23 22 21 45 45 H 1.09000 * 109.18548 * 296.59707 * 24 23 22 46 46 H 1.08999 * 110.08893 * 175.66298 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4323 -6.1007 0.0031 13 6 1.9830 -7.3713 0.0042 14 8 0.7906 -7.5929 0.0043 15 6 2.9623 -8.5167 0.0043 16 7 2.2297 -9.7855 0.0050 17 6 1.8619 -10.4345 1.1428 18 8 2.2467 -10.2067 2.2695 19 6 0.8832 -11.4851 0.7186 20 1 -0.1179 -11.0597 0.6480 21 6 0.8315 -12.8073 1.4524 22 6 -0.2435 -13.6525 0.7399 23 6 0.0658 -13.8329 -0.7422 24 6 0.3158 -12.5029 -1.4460 25 6 1.4297 -11.8010 -0.7057 26 1 2.2997 -12.4536 -0.6324 27 6 1.8560 -10.4326 -1.1319 28 8 1.8670 -9.9901 -2.2605 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5567 0.8904 31 1 0.6247 -2.5570 -0.8895 32 1 2.8725 -3.6047 -0.8878 33 1 2.8714 -3.6039 0.8921 34 1 0.8533 -5.0441 0.8922 35 1 0.8539 -5.0455 -0.8877 36 1 3.3860 -5.9233 0.0027 37 1 3.5883 -8.4596 -0.8861 38 1 3.5895 -8.4584 0.8938 39 1 1.7991 -13.3060 1.3947 40 1 0.5526 -12.6472 2.4939 41 1 -0.2956 -14.6329 1.2134 42 1 -1.2095 -13.1583 0.8432 43 1 0.9554 -14.4543 -0.8452 44 1 -0.7744 -14.3363 -1.2205 45 1 -0.5928 -11.9019 -1.4093 46 1 0.6079 -12.6764 -2.4817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171506388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:52 Heat of formation + Delta-G solvation = -123.536122 kcal Electronic energy + Delta-G solvation = -27010.955372 eV Core-core repulsion = 23092.796761 eV Total energy + Delta-G solvation = -3918.158611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.58539 -39.63381 -38.85791 -38.14976 -36.05002 -35.50662 -33.66005 -32.47298 -31.56142 -31.18125 -28.53407 -26.14293 -25.66948 -23.68379 -22.77462 -22.37275 -21.02246 -20.80395 -20.54895 -19.52995 -17.78554 -17.48086 -17.32849 -16.80437 -16.07602 -15.90193 -15.58639 -15.34888 -15.24466 -14.88381 -14.41505 -14.27262 -14.10353 -13.83123 -13.74906 -13.64537 -13.32480 -12.96105 -12.89117 -12.65657 -11.96871 -11.84636 -11.81626 -11.66769 -11.66351 -11.32504 -11.06040 -10.94710 -10.80059 -10.71356 -10.34793 -10.23848 -10.16331 -10.04863 -10.00641 -9.54559 -8.96745 -8.59053 -8.34848 -6.38391 -4.08290 1.22667 1.93379 2.23394 2.52237 3.23052 3.32959 3.42273 3.45895 3.61608 3.81026 3.85628 4.28147 4.47044 4.48993 4.52821 4.58736 4.60607 4.65155 4.72736 4.80588 4.83414 4.87261 5.07087 5.19990 5.25457 5.38775 5.46825 5.49966 5.53317 5.55251 5.60251 5.62413 5.69611 5.81595 5.99384 6.28352 6.33330 6.42908 6.64875 6.80456 6.94756 7.33234 7.37974 7.45564 7.51637 8.13760 8.17708 8.43351 8.85506 9.64397 11.02364 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030765 B = 0.002020 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.907824 B =13858.970975 C =13967.202895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.073 2.927 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.604 4.604 8 H 0.049 0.951 9 C 0.010 3.990 10 C -0.114 4.114 11 C 0.117 3.883 12 N -0.720 5.720 13 C 0.495 3.505 14 O -0.535 6.535 15 C 0.080 3.920 16 N -0.577 5.577 17 C 0.550 3.450 18 O -0.468 6.468 19 C -0.131 4.131 20 H 0.127 0.873 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.098 4.098 25 C -0.129 4.129 26 H 0.123 0.877 27 C 0.546 3.454 28 O -0.462 6.462 29 H 0.270 0.730 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.120 0.880 38 H 0.124 0.876 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.027 -32.140 0.003 32.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.901 3.099 4 H -0.214 1.214 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.068 0.932 9 C -0.027 4.027 10 C -0.152 4.152 11 C -0.006 4.006 12 N -0.371 5.371 13 C 0.279 3.721 14 O -0.412 6.412 15 C -0.046 4.046 16 N -0.323 5.323 17 C 0.340 3.660 18 O -0.338 6.338 19 C -0.152 4.152 20 H 0.145 0.855 21 C -0.134 4.134 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.136 4.136 25 C -0.150 4.150 26 H 0.141 0.859 27 C 0.335 3.665 28 O -0.331 6.331 29 H 0.080 0.920 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.235 0.765 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.185 -30.254 0.001 30.542 hybrid contribution 0.755 -1.257 -0.031 1.467 sum 4.940 -31.510 -0.030 31.895 Atomic orbital electron populations 1.70749 1.06898 1.30715 1.46443 1.25886 0.96575 1.02832 0.93756 0.83490 0.74615 0.75034 0.76747 1.21440 1.20957 1.21497 1.22031 0.94277 0.91875 1.56009 0.93217 1.19161 0.94504 0.92683 0.96381 1.21758 0.99507 0.92673 1.01226 1.21681 0.91867 0.85026 1.02010 1.46093 1.11033 1.05583 1.74420 1.20723 0.89916 0.84434 0.77017 1.90712 1.16542 1.84662 1.49275 1.21577 0.94290 0.81809 1.06883 1.47539 1.53689 1.21718 1.09313 1.20619 0.80038 0.82075 0.83267 1.90763 1.55691 1.67386 1.19914 1.22223 1.00498 0.96497 0.95955 0.85502 1.21310 1.00455 0.91930 0.99740 1.21655 0.98765 1.00398 0.95060 1.21340 1.02440 0.96666 0.95225 1.20937 0.96761 0.96356 0.99573 1.22058 1.01837 0.94696 0.96378 0.85931 1.20611 0.74851 0.87561 0.83458 1.90780 1.48782 1.73432 1.20103 0.92002 0.97181 0.97168 0.92429 0.92438 0.91731 0.91705 0.76517 0.86199 0.85855 0.90694 0.89988 0.91038 0.91461 0.91705 0.90962 0.90645 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.29 13.65 55.43 0.76 -27.54 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.43 29.90 -169.99 -5.08 20.34 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.60 -17.20 9.11 -34.44 -0.31 -17.52 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.01 0.26 4.28 -27.89 -0.12 0.14 16 10 C -0.11 -2.25 5.27 -26.73 -0.14 -2.39 16 11 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 12 N -0.72 -10.24 5.56 -60.29 -0.33 -10.58 16 13 C 0.50 7.39 7.90 -10.99 -0.09 7.30 16 14 O -0.54 -10.18 16.43 5.56 0.09 -10.08 16 15 C 0.08 0.85 6.22 -5.19 -0.03 0.82 16 16 N -0.58 -6.40 2.16 -116.76 -0.25 -6.66 16 17 C 0.55 6.00 7.76 -10.88 -0.08 5.92 16 18 O -0.47 -6.34 17.68 5.61 0.10 -6.24 16 19 C -0.13 -0.99 2.41 -91.61 -0.22 -1.21 16 20 H 0.13 1.01 7.82 -51.93 -0.41 0.60 16 21 C -0.10 -0.50 5.88 -26.96 -0.16 -0.66 16 22 C -0.12 -0.47 5.80 -26.37 -0.15 -0.63 16 23 C -0.12 -0.45 5.78 -27.24 -0.16 -0.60 16 24 C -0.10 -0.55 5.74 -27.95 -0.16 -0.71 16 25 C -0.13 -0.88 2.38 -91.83 -0.22 -1.10 16 26 H 0.12 0.58 7.84 -51.93 -0.41 0.18 16 27 C 0.55 5.93 7.73 -10.97 -0.08 5.85 16 28 O -0.46 -6.52 17.83 5.60 0.10 -6.43 16 29 H 0.27 8.34 7.22 -40.82 -0.29 8.05 16 30 H 0.01 0.27 8.01 -51.92 -0.42 -0.15 16 31 H 0.01 0.27 8.01 -51.93 -0.42 -0.15 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.40 4.37 8.47 -40.82 -0.35 4.02 16 37 H 0.12 1.00 8.08 -51.93 -0.42 0.59 16 38 H 0.12 1.06 7.89 -51.93 -0.41 0.65 16 39 H 0.07 0.33 7.90 -51.92 -0.41 -0.08 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.48 7.94 -51.93 -0.41 0.07 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 380.23 15.07 5.73 5.73 Total: -1.00 -37.09 380.23 -8.31 -45.40 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.37 Total: -1.51 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.05 Total: -2.44 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.17 Total: -44.77 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.29 Total: -22.75 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.09 -8.31 -45.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.141 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds