Wall clock time and date at job start Fri Apr 10 2020 14:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00125 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99927 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99417 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00023 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00146 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99842 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47110 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.47212 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47113 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99664 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00359 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99651 * 179.97438 * 13 12 11 16 16 N 1.46506 * 109.46877 * 180.02562 * 15 13 12 17 17 C 1.36049 * 123.27992 * 269.70560 * 16 15 13 18 18 O 1.21222 * 127.00190 * 347.26660 * 17 16 15 19 19 C 1.49717 * 105.93491 * 167.15843 * 17 16 15 20 20 H 1.09003 * 110.17622 * 275.51329 * 19 17 16 21 21 C 1.51309 * 119.87792 * 146.45553 * 19 17 16 22 22 C 1.54195 * 106.18379 * 181.51912 * 21 19 17 23 23 C 1.52476 * 111.87672 * 57.50553 * 22 21 19 24 24 C 1.52538 * 112.24031 * 307.26333 * 23 22 21 25 25 C 1.51043 * 107.45602 * 55.87529 * 24 23 22 26 26 H 1.08998 * 110.08066 * 54.11012 * 25 24 23 27 27 C 1.36052 * 123.28633 * 90.00562 * 16 15 13 28 28 O 1.21230 * 127.00698 * 347.37018 * 27 16 15 29 29 H 0.97000 * 119.99838 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47053 * 299.99554 * 9 7 2 31 31 H 1.08991 * 109.47398 * 59.99511 * 9 7 2 32 32 H 1.09005 * 109.47000 * 299.99228 * 10 9 7 33 33 H 1.08996 * 109.47876 * 59.99314 * 10 9 7 34 34 H 1.08997 * 109.46714 * 299.99832 * 11 10 9 35 35 H 1.09000 * 109.47156 * 59.99729 * 11 10 9 36 36 H 0.97006 * 119.99654 * 359.97438 * 12 11 10 37 37 H 1.08997 * 109.47561 * 300.00070 * 15 13 12 38 38 H 1.09000 * 109.46976 * 60.00376 * 15 13 12 39 39 H 1.09008 * 110.10599 * 300.68020 * 21 19 17 40 40 H 1.09004 * 110.10880 * 62.35445 * 21 19 17 41 41 H 1.09002 * 109.00193 * 178.11744 * 22 21 19 42 42 H 1.08993 * 109.00208 * 296.88873 * 22 21 19 43 43 H 1.09002 * 108.95322 * 67.63414 * 23 22 21 44 44 H 1.08998 * 108.95539 * 186.36495 * 23 22 21 45 45 H 1.09000 * 109.18548 * 296.59707 * 24 23 22 46 46 H 1.08999 * 110.08893 * 175.66298 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4802 -4.9871 0.0025 12 7 2.4323 -6.1007 0.0031 13 6 1.9830 -7.3713 0.0042 14 8 0.7906 -7.5929 0.0043 15 6 2.9623 -8.5167 0.0043 16 7 2.2297 -9.7855 0.0050 17 6 1.8619 -10.4345 1.1428 18 8 2.2467 -10.2067 2.2695 19 6 0.8832 -11.4851 0.7186 20 1 -0.1179 -11.0597 0.6480 21 6 0.8315 -12.8073 1.4524 22 6 -0.2435 -13.6525 0.7399 23 6 0.0658 -13.8329 -0.7422 24 6 0.3158 -12.5029 -1.4460 25 6 1.4297 -11.8010 -0.7057 26 1 2.2997 -12.4536 -0.6324 27 6 1.8560 -10.4326 -1.1319 28 8 1.8670 -9.9901 -2.2605 29 1 -0.4850 -0.8401 -0.0004 30 1 0.6241 -2.5567 0.8904 31 1 0.6247 -2.5570 -0.8895 32 1 2.8725 -3.6047 -0.8878 33 1 2.8714 -3.6039 0.8921 34 1 0.8533 -5.0441 0.8922 35 1 0.8539 -5.0455 -0.8877 36 1 3.3860 -5.9233 0.0027 37 1 3.5883 -8.4596 -0.8861 38 1 3.5895 -8.4584 0.8938 39 1 1.7991 -13.3060 1.3947 40 1 0.5526 -12.6472 2.4939 41 1 -0.2956 -14.6329 1.2134 42 1 -1.2095 -13.1583 0.8432 43 1 0.9554 -14.4543 -0.8452 44 1 -0.7744 -14.3363 -1.2205 45 1 -0.5928 -11.9019 -1.4093 46 1 0.6079 -12.6764 -2.4817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171506388.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:51 Heat of formation + Delta-G solvation = -148.846909 kcal Electronic energy + Delta-G solvation = -27012.052930 eV Core-core repulsion = 23092.796761 eV Total energy + Delta-G solvation = -3919.256169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.36686 -40.83673 -39.78494 -38.79263 -37.33053 -36.75244 -35.54714 -33.43868 -32.67886 -32.01768 -29.59063 -27.79611 -26.38995 -25.13139 -23.91742 -23.01673 -22.64389 -21.83658 -21.21178 -20.38080 -18.99026 -18.74661 -18.37587 -18.24848 -17.01608 -16.95381 -16.71777 -16.31413 -16.02790 -15.76082 -15.71750 -15.64385 -15.27329 -14.94552 -14.79763 -14.64792 -14.36829 -13.96299 -13.87727 -13.65542 -13.33151 -13.32782 -12.68587 -12.62253 -12.51250 -12.30029 -12.11943 -12.10896 -11.94414 -11.91020 -11.85658 -11.71815 -11.39278 -11.01411 -10.94655 -10.80527 -10.61747 -10.57697 -10.32165 -8.71979 -6.43251 0.37172 1.06506 1.33209 1.43321 1.51958 1.61529 1.78809 2.08976 2.55979 2.69173 3.13448 3.18306 3.21317 3.51278 3.76776 3.89597 3.96071 3.99683 4.02507 4.04108 4.09265 4.13596 4.26239 4.30462 4.34021 4.41545 4.44773 4.70756 4.75853 4.78294 4.84726 4.90603 5.06545 5.13101 5.19444 5.20044 5.31420 5.33149 5.35874 5.41684 5.50008 5.51025 5.93735 6.10825 6.14995 6.30239 6.52786 6.58371 6.99162 7.39969 8.68762 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.030765 B = 0.002020 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.907824 B =13858.970975 C =13967.202895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.045 4.045 3 Si 1.123 2.877 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.617 4.617 8 H 0.059 0.941 9 C 0.007 3.993 10 C -0.095 4.095 11 C 0.131 3.869 12 N -0.708 5.708 13 C 0.490 3.510 14 O -0.582 6.582 15 C 0.082 3.918 16 N -0.583 5.583 17 C 0.547 3.453 18 O -0.498 6.498 19 C -0.126 4.126 20 H 0.119 0.881 21 C -0.093 4.093 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.099 4.099 25 C -0.117 4.117 26 H 0.153 0.847 27 C 0.542 3.458 28 O -0.500 6.500 29 H 0.254 0.746 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.420 0.580 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 -33.955 0.017 34.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.242 4.242 3 Si 0.944 3.056 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.655 4.655 8 H 0.077 0.923 9 C -0.031 4.031 10 C -0.133 4.133 11 C 0.007 3.993 12 N -0.360 5.360 13 C 0.276 3.724 14 O -0.462 6.462 15 C -0.043 4.043 16 N -0.328 5.328 17 C 0.339 3.661 18 O -0.370 6.370 19 C -0.147 4.147 20 H 0.137 0.863 21 C -0.130 4.130 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.137 4.137 25 C -0.138 4.138 26 H 0.171 0.829 27 C 0.333 3.667 28 O -0.372 6.372 29 H 0.064 0.936 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.258 0.742 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.451 -32.110 0.017 32.751 hybrid contribution 0.035 -0.699 -0.034 0.701 sum 6.485 -32.809 -0.018 33.443 Atomic orbital electron populations 1.70893 1.08133 1.29849 1.48853 1.27564 0.96611 1.07253 0.92727 0.82864 0.74221 0.70686 0.77826 1.19754 1.21055 1.18917 1.22493 0.94988 0.93002 1.54991 0.92284 1.19127 0.95162 0.94529 0.94285 1.21485 0.98186 0.91208 1.02422 1.21229 0.91987 0.85555 1.00541 1.45855 1.11507 1.04680 1.74006 1.21540 0.90076 0.85259 0.75529 1.90692 1.18850 1.85358 1.51325 1.21728 0.93273 0.79985 1.09351 1.47758 1.53641 1.21692 1.09721 1.21172 0.79873 0.82373 0.82688 1.90741 1.56852 1.68431 1.20927 1.22274 0.98986 0.96763 0.96669 0.86285 1.21365 1.01802 0.90615 0.99256 1.21651 0.97904 1.00810 0.95199 1.21316 1.03572 0.95471 0.94716 1.20988 0.95629 0.97130 0.99914 1.22164 1.03279 0.92894 0.95462 0.82950 1.21320 0.73725 0.88860 0.82761 1.90758 1.50451 1.74503 1.21477 0.93648 0.99338 0.99364 0.91130 0.91114 0.93283 0.93388 0.74209 0.83552 0.83359 0.89138 0.90505 0.89424 0.92066 0.90115 0.90105 0.91998 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.65 21.45 0.29 -59.36 16 2 C -0.04 -2.62 5.46 84.65 0.46 -2.16 16 3 Si 1.12 50.37 29.90 68.60 2.05 52.42 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 7 C -0.62 -35.18 9.11 25.60 0.23 -34.95 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.01 0.35 4.28 29.85 0.13 0.48 16 10 C -0.10 -3.72 5.27 30.60 0.16 -3.56 16 11 C 0.13 4.73 5.67 86.38 0.49 5.22 16 12 N -0.71 -19.55 5.56 -463.05 -2.57 -22.12 16 13 C 0.49 14.48 7.90 87.66 0.69 15.17 16 14 O -0.58 -22.73 16.43 -3.03 -0.05 -22.78 16 15 C 0.08 1.62 6.22 85.63 0.53 2.15 16 16 N -0.58 -12.46 2.16 -758.67 -1.64 -14.10 16 17 C 0.55 11.55 7.76 87.15 0.68 12.22 16 18 O -0.50 -13.22 17.68 -2.85 -0.05 -13.27 16 19 C -0.13 -1.78 2.41 -11.44 -0.03 -1.81 16 20 H 0.12 1.90 7.82 -2.39 -0.02 1.89 16 21 C -0.09 -0.77 5.88 30.45 0.18 -0.59 16 22 C -0.12 -0.63 5.80 30.83 0.18 -0.46 16 23 C -0.11 -0.53 5.78 30.27 0.17 -0.36 16 24 C -0.10 -0.95 5.74 29.80 0.17 -0.78 16 25 C -0.12 -1.42 2.38 -11.58 -0.03 -1.45 16 26 H 0.15 0.97 7.84 -2.39 -0.02 0.95 16 27 C 0.54 11.40 7.73 87.09 0.67 12.07 16 28 O -0.50 -14.07 17.83 -2.88 -0.05 -14.12 16 29 H 0.25 16.43 7.22 -92.71 -0.67 15.76 16 30 H -0.01 -0.66 8.01 -2.38 -0.02 -0.68 16 31 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 32 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 33 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.42 8.28 8.47 -92.70 -0.79 7.49 16 37 H 0.15 2.14 8.08 -2.39 -0.02 2.12 16 38 H 0.15 2.22 7.89 -2.39 -0.02 2.20 16 39 H 0.09 0.50 7.90 -2.38 -0.02 0.48 16 40 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.06 0.77 7.94 -2.39 -0.02 0.75 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -83.00 380.23 2.97 -80.03 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.30 Total: 12.11 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 4.70 Total: 1.21 kcal Atomic # 7 Polarization: -91.66 SS G_CDS: -3.92 Total: -95.58 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.15 Total: -50.18 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.05 Total: 52.42 kcal Total: -83.00 2.97 -80.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506388.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.821 kcal (2) G-P(sol) polarization free energy of solvation -83.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds