Wall clock time and date at job start Fri Apr 10 2020 14:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00191 * 2 1 4 4 H 1.48502 * 109.47226 * 240.00056 * 3 2 1 5 5 H 1.48497 * 109.47075 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46900 * 119.99914 * 3 2 1 7 7 C 1.37876 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47356 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99674 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.99738 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.46967 * 180.02562 * 14 12 11 16 16 N 1.46498 * 109.46904 * 180.02562 * 15 14 12 17 17 C 1.34339 * 122.84568 * 270.03078 * 16 15 14 18 18 O 1.21233 * 125.94223 * 357.07012 * 17 16 15 19 19 C 1.50656 * 108.10859 * 177.02979 * 17 16 15 20 20 H 1.08999 * 105.60755 * 256.00128 * 19 17 16 21 21 C 1.49434 * 113.96629 * 139.71634 * 19 17 16 22 22 C 1.50274 * 114.36930 * 266.06220 * 21 19 17 23 23 C 1.53451 * 107.63325 * 305.73406 * 22 21 19 24 24 C 1.52225 * 108.02620 * 68.14337 * 23 22 21 25 25 C 1.51124 * 105.12268 * 7.51560 * 19 17 16 26 26 H 1.09005 * 109.91776 * 234.45450 * 25 19 17 27 27 C 1.34045 * 122.84663 * 90.00207 * 16 15 14 28 28 O 1.21233 * 125.58883 * 356.79208 * 27 16 15 29 29 H 0.97005 * 119.99833 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46910 * 59.99842 * 9 7 2 31 31 H 1.09002 * 109.46735 * 300.00076 * 9 7 2 32 32 H 1.09003 * 109.47166 * 59.99585 * 10 9 7 33 33 H 1.08997 * 109.46426 * 299.99970 * 10 9 7 34 34 H 0.96993 * 119.99973 * 359.97438 * 11 10 9 35 35 H 1.09003 * 109.47390 * 60.00452 * 14 12 11 36 36 H 1.09002 * 109.47575 * 300.00426 * 14 12 11 37 37 H 1.08997 * 109.47462 * 60.00063 * 15 14 12 38 38 H 1.09002 * 109.47039 * 299.99773 * 15 14 12 39 39 H 1.08999 * 108.71780 * 27.33757 * 21 19 17 40 40 H 1.09006 * 108.71562 * 145.36425 * 21 19 17 41 41 H 1.08996 * 110.14332 * 186.00973 * 22 21 19 42 42 H 1.08997 * 109.53831 * 65.10866 * 22 21 19 43 43 H 1.09003 * 109.75250 * 308.50825 * 23 22 21 44 44 H 1.09006 * 109.75064 * 187.77718 * 23 22 21 45 45 H 1.09000 * 108.80146 * 180.53539 * 24 23 22 46 46 H 1.09001 * 108.71326 * 62.22502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0018 13 8 3.3993 -6.0981 -0.0014 14 6 1.4330 -7.4031 -0.0018 15 6 2.4272 -8.5661 -0.0020 16 7 1.6946 -9.8347 -0.0026 17 6 1.3294 -10.4658 1.1257 18 8 1.5908 -10.1121 2.2554 19 6 0.5377 -11.6890 0.7428 20 1 -0.5042 -11.4381 0.9418 21 6 0.8441 -12.8943 1.5713 22 6 1.8877 -13.8018 0.9834 23 6 1.4395 -14.1662 -0.4382 24 6 1.5168 -12.9092 -1.2933 25 6 0.6565 -11.7808 -0.7610 26 1 -0.3358 -11.8257 -1.2099 27 6 1.3314 -10.4640 -1.1291 28 8 1.5062 -10.0512 -2.2555 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8719 -3.6044 0.8894 33 1 2.8717 -3.6043 -0.8905 34 1 0.5427 -4.9308 -0.0011 35 1 0.8059 -7.4606 -0.8916 36 1 0.8066 -7.4611 0.8884 37 1 3.0539 -8.5085 0.8880 38 1 3.0538 -8.5083 -0.8920 39 1 1.1869 -12.5663 2.5526 40 1 -0.0708 -13.4730 1.6987 41 1 1.9809 -14.7059 1.5850 42 1 2.8448 -13.2815 0.9474 43 1 0.4141 -14.5354 -0.4179 44 1 2.0990 -14.9314 -0.8476 45 1 1.1916 -13.1519 -2.3049 46 1 2.5534 -12.5739 -1.3291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342642541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:43 Heat of formation + Delta-G solvation = -127.898610 kcal Electronic energy + Delta-G solvation = -26886.338919 eV Core-core repulsion = 22967.991137 eV Total energy + Delta-G solvation = -3918.347783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.71184 -39.38679 -38.97608 -38.17578 -36.14414 -34.93608 -33.34605 -32.85278 -31.94735 -30.85791 -29.41374 -25.74702 -25.59647 -24.30620 -23.02651 -22.91167 -21.01858 -20.43647 -20.06518 -19.41299 -17.89652 -17.02096 -16.85661 -16.57543 -16.27127 -15.77645 -15.51576 -15.32548 -15.12792 -14.99216 -14.79592 -14.43950 -13.96090 -13.91371 -13.64932 -13.39852 -13.27597 -13.01282 -12.72734 -12.62396 -12.55014 -12.28059 -11.96373 -11.41838 -11.33398 -11.22808 -11.07596 -11.02091 -10.87597 -10.66876 -10.58091 -10.34141 -10.19513 -10.15726 -9.84794 -9.48558 -9.22090 -8.57262 -8.37533 -6.09931 -4.12945 1.15054 2.10443 2.31427 2.91838 3.31127 3.34782 3.37742 3.47879 3.59904 3.71746 3.82956 4.05037 4.40840 4.41371 4.45587 4.60227 4.65873 4.71891 4.78522 4.81337 4.90632 4.94345 5.17191 5.21262 5.27002 5.29143 5.35981 5.40857 5.43636 5.47960 5.52232 5.64713 5.70765 5.75784 5.80232 6.31275 6.32976 6.48602 6.71716 6.86801 6.95369 7.42666 7.49667 7.60059 7.87531 7.94869 8.26091 8.57247 8.92654 9.51845 11.01608 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.001981 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.816326 B =14133.712844 C =14325.448551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.720 5.720 12 C 0.513 3.487 13 O -0.551 6.551 14 C -0.158 4.158 15 C 0.115 3.885 16 N -0.576 5.576 17 C 0.531 3.469 18 O -0.470 6.470 19 C -0.118 4.118 20 H 0.112 0.888 21 C -0.101 4.101 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.105 4.105 25 C -0.105 4.105 26 H 0.122 0.878 27 C 0.525 3.475 28 O -0.471 6.471 29 H 0.263 0.737 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.398 0.602 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.663 -32.409 0.276 32.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.369 5.369 12 C 0.297 3.703 13 O -0.430 6.430 14 C -0.199 4.199 15 C -0.006 4.006 16 N -0.319 5.319 17 C 0.320 3.680 18 O -0.340 6.340 19 C -0.139 4.139 20 H 0.130 0.870 21 C -0.138 4.138 22 C -0.162 4.162 23 C -0.155 4.155 24 C -0.143 4.143 25 C -0.127 4.127 26 H 0.140 0.860 27 C 0.313 3.687 28 O -0.342 6.342 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.232 0.768 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.098 0.902 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.697 -31.783 0.277 31.830 hybrid contribution -0.224 1.267 -0.031 1.287 sum -1.920 -30.516 0.246 30.578 Atomic orbital electron populations 1.69945 1.06091 1.27000 1.50261 1.25002 0.94917 0.99441 0.94964 0.86554 0.79502 0.82584 0.78789 1.20096 1.21234 1.20104 1.21011 0.93219 0.90380 1.51515 0.92280 1.19325 0.94197 0.91117 0.97852 1.21755 0.96090 0.81412 1.00888 1.46319 1.10598 1.06558 1.73453 1.20162 0.88079 0.85239 0.76792 1.90691 1.13855 1.87831 1.50576 1.21946 0.99802 0.93160 1.04974 1.21533 0.93599 0.79089 1.06391 1.47005 1.52126 1.23436 1.09307 1.20763 0.78056 0.85213 0.83976 1.90797 1.53197 1.69590 1.20419 1.20513 1.02776 0.95522 0.95100 0.86983 1.20105 1.00794 0.93871 0.99078 1.21213 0.98779 0.99633 0.96528 1.21499 1.02258 0.96572 0.95137 1.20944 0.99614 0.93530 1.00192 1.21368 1.02567 0.93829 0.94917 0.85984 1.21259 0.77367 0.86160 0.83929 1.90804 1.52460 1.69946 1.20942 0.92779 0.95922 0.95938 0.92446 0.92455 0.76808 0.88452 0.88556 0.87824 0.87919 0.90036 0.90434 0.90673 0.91747 0.91079 0.90952 0.90166 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 11 N -0.72 -12.67 5.56 -60.29 -0.33 -13.00 16 12 C 0.51 8.67 7.83 -10.99 -0.09 8.58 16 13 O -0.55 -11.24 15.98 5.55 0.09 -11.15 16 14 C -0.16 -1.96 6.02 -27.88 -0.17 -2.13 16 15 C 0.11 1.41 4.87 -4.04 -0.02 1.40 16 16 N -0.58 -5.88 2.57 -114.96 -0.30 -6.18 16 17 C 0.53 5.11 7.62 -11.20 -0.09 5.02 16 18 O -0.47 -6.02 17.02 5.60 0.10 -5.92 16 19 C -0.12 -0.67 2.62 -94.50 -0.25 -0.92 16 20 H 0.11 0.44 8.05 -51.93 -0.42 0.03 16 21 C -0.10 -0.46 5.22 -29.85 -0.16 -0.62 16 22 C -0.12 -0.52 5.99 -27.86 -0.17 -0.69 16 23 C -0.12 -0.41 5.97 -26.89 -0.16 -0.57 16 24 C -0.10 -0.52 5.28 -27.86 -0.15 -0.67 16 25 C -0.11 -0.59 3.29 -92.56 -0.30 -0.90 16 26 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 27 C 0.52 5.05 7.02 -10.43 -0.07 4.97 16 28 O -0.47 -6.09 17.53 5.60 0.10 -6.00 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.40 6.04 8.47 -40.82 -0.35 5.69 16 35 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.37 7.80 -51.93 -0.40 0.96 16 38 H 0.10 1.36 7.83 -51.93 -0.41 0.95 16 39 H 0.08 0.49 7.50 -51.93 -0.39 0.10 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.06 0.35 8.11 -51.93 -0.42 -0.07 16 43 H 0.07 0.18 8.10 -51.93 -0.42 -0.24 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.41 7.68 -51.93 -0.40 0.01 16 LS Contribution 378.97 15.07 5.71 5.71 Total: -1.00 -34.42 378.97 -8.51 -42.93 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.40 Total: -0.25 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.19 Total: 2.86 kcal Atomic # 7 Polarization: -44.82 SS G_CDS: 0.11 Total: -44.72 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.28 Total: -23.06 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.42 -8.51 -42.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342642541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.965 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds