Wall clock time and date at job start Fri Apr 10 2020 14:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00191 * 2 1 4 4 H 1.48502 * 109.47226 * 240.00056 * 3 2 1 5 5 H 1.48497 * 109.47075 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46900 * 119.99914 * 3 2 1 7 7 C 1.37876 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47356 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99674 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.50695 * 119.99738 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.46967 * 180.02562 * 14 12 11 16 16 N 1.46498 * 109.46904 * 180.02562 * 15 14 12 17 17 C 1.34339 * 122.84568 * 270.03078 * 16 15 14 18 18 O 1.21233 * 125.94223 * 357.07012 * 17 16 15 19 19 C 1.50656 * 108.10859 * 177.02979 * 17 16 15 20 20 H 1.08999 * 105.60755 * 256.00128 * 19 17 16 21 21 C 1.49434 * 113.96629 * 139.71634 * 19 17 16 22 22 C 1.50274 * 114.36930 * 266.06220 * 21 19 17 23 23 C 1.53451 * 107.63325 * 305.73406 * 22 21 19 24 24 C 1.52225 * 108.02620 * 68.14337 * 23 22 21 25 25 C 1.51124 * 105.12268 * 7.51560 * 19 17 16 26 26 H 1.09005 * 109.91776 * 234.45450 * 25 19 17 27 27 C 1.34045 * 122.84663 * 90.00207 * 16 15 14 28 28 O 1.21233 * 125.58883 * 356.79208 * 27 16 15 29 29 H 0.97005 * 119.99833 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46910 * 59.99842 * 9 7 2 31 31 H 1.09002 * 109.46735 * 300.00076 * 9 7 2 32 32 H 1.09003 * 109.47166 * 59.99585 * 10 9 7 33 33 H 1.08997 * 109.46426 * 299.99970 * 10 9 7 34 34 H 0.96993 * 119.99973 * 359.97438 * 11 10 9 35 35 H 1.09003 * 109.47390 * 60.00452 * 14 12 11 36 36 H 1.09002 * 109.47575 * 300.00426 * 14 12 11 37 37 H 1.08997 * 109.47462 * 60.00063 * 15 14 12 38 38 H 1.09002 * 109.47039 * 299.99773 * 15 14 12 39 39 H 1.08999 * 108.71780 * 27.33757 * 21 19 17 40 40 H 1.09006 * 108.71562 * 145.36425 * 21 19 17 41 41 H 1.08996 * 110.14332 * 186.00973 * 22 21 19 42 42 H 1.08997 * 109.53831 * 65.10866 * 22 21 19 43 43 H 1.09003 * 109.75250 * 308.50825 * 23 22 21 44 44 H 1.09006 * 109.75064 * 187.77718 * 23 22 21 45 45 H 1.09000 * 108.80146 * 180.53539 * 24 23 22 46 46 H 1.09001 * 108.71326 * 62.22502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5126 -4.9308 -0.0012 12 6 2.1865 -6.0981 -0.0018 13 8 3.3993 -6.0981 -0.0014 14 6 1.4330 -7.4031 -0.0018 15 6 2.4272 -8.5661 -0.0020 16 7 1.6946 -9.8347 -0.0026 17 6 1.3294 -10.4658 1.1257 18 8 1.5908 -10.1121 2.2554 19 6 0.5377 -11.6890 0.7428 20 1 -0.5042 -11.4381 0.9418 21 6 0.8441 -12.8943 1.5713 22 6 1.8877 -13.8018 0.9834 23 6 1.4395 -14.1662 -0.4382 24 6 1.5168 -12.9092 -1.2933 25 6 0.6565 -11.7808 -0.7610 26 1 -0.3358 -11.8257 -1.2099 27 6 1.3314 -10.4640 -1.1291 28 8 1.5062 -10.0512 -2.2555 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.8719 -3.6044 0.8894 33 1 2.8717 -3.6043 -0.8905 34 1 0.5427 -4.9308 -0.0011 35 1 0.8059 -7.4606 -0.8916 36 1 0.8066 -7.4611 0.8884 37 1 3.0539 -8.5085 0.8880 38 1 3.0538 -8.5083 -0.8920 39 1 1.1869 -12.5663 2.5526 40 1 -0.0708 -13.4730 1.6987 41 1 1.9809 -14.7059 1.5850 42 1 2.8448 -13.2815 0.9474 43 1 0.4141 -14.5354 -0.4179 44 1 2.0990 -14.9314 -0.8476 45 1 1.1916 -13.1519 -2.3049 46 1 2.5534 -12.5739 -1.3291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342642541.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:42 Heat of formation + Delta-G solvation = -150.869437 kcal Electronic energy + Delta-G solvation = -26887.335009 eV Core-core repulsion = 22967.991137 eV Total energy + Delta-G solvation = -3919.343872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.42337 -40.81607 -39.82090 -38.72896 -37.07856 -36.63773 -34.86825 -34.13906 -32.34623 -32.03550 -30.92872 -27.23807 -26.22410 -25.69593 -23.69223 -23.46661 -22.86033 -21.56884 -21.00531 -20.00382 -18.90213 -18.49891 -17.73414 -17.69914 -17.48141 -16.84713 -16.77940 -16.47611 -16.25105 -15.90206 -15.73684 -15.48493 -15.44905 -14.68150 -14.54728 -14.32367 -14.23707 -14.05185 -13.89698 -13.72430 -13.47730 -13.26353 -12.95839 -12.94237 -12.56688 -12.47639 -12.37179 -12.26030 -11.71696 -11.71434 -11.65486 -11.51546 -11.22036 -11.16554 -11.05553 -10.90175 -10.83262 -10.62717 -10.09793 -8.26417 -6.37176 0.39162 1.28721 1.40129 1.42473 1.50506 1.51799 1.56358 2.23832 2.43469 2.91549 3.04059 3.08124 3.36713 3.52979 3.66017 3.74815 3.79954 4.06644 4.10904 4.23316 4.26304 4.28979 4.36384 4.41735 4.47306 4.47941 4.49948 4.58098 4.72788 4.81062 4.83899 4.97325 5.03754 5.13707 5.22431 5.22548 5.33693 5.41113 5.44238 5.52110 5.54234 5.70742 5.75108 6.12951 6.21432 6.50950 6.63923 6.75484 7.15729 7.32054 8.85162 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.034440 B = 0.001981 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.816326 B =14133.712844 C =14325.448551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.715 5.715 12 C 0.512 3.488 13 O -0.587 6.587 14 C -0.141 4.141 15 C 0.116 3.884 16 N -0.578 5.578 17 C 0.528 3.472 18 O -0.507 6.507 19 C -0.109 4.109 20 H 0.142 0.858 21 C -0.100 4.100 22 C -0.126 4.126 23 C -0.110 4.110 24 C -0.106 4.106 25 C -0.090 4.090 26 H 0.156 0.844 27 C 0.522 3.478 28 O -0.509 6.509 29 H 0.266 0.734 30 H 0.009 0.991 31 H 0.009 0.991 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.412 0.588 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 -34.271 0.194 34.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.077 0.923 9 C -0.015 4.015 10 C 0.015 3.985 11 N -0.366 5.366 12 C 0.299 3.701 13 O -0.468 6.468 14 C -0.181 4.181 15 C -0.006 4.006 16 N -0.321 5.321 17 C 0.319 3.681 18 O -0.380 6.380 19 C -0.129 4.129 20 H 0.160 0.840 21 C -0.137 4.137 22 C -0.164 4.164 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.111 4.111 26 H 0.173 0.827 27 C 0.312 3.688 28 O -0.382 6.382 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.248 0.752 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.170 -33.688 0.197 33.838 hybrid contribution 0.259 1.807 -0.001 1.825 sum -2.911 -31.881 0.195 32.015 Atomic orbital electron populations 1.70048 1.07516 1.28110 1.50816 1.25888 0.95847 1.03149 0.94367 0.85483 0.78299 0.78065 0.79112 1.19357 1.20473 1.19367 1.21437 0.93584 0.91949 1.51796 0.92331 1.19134 0.94210 0.91728 0.96400 1.21257 0.95113 0.82199 0.99897 1.46139 1.11220 1.05597 1.73654 1.20864 0.87801 0.86166 0.75262 1.90675 1.15753 1.88397 1.52017 1.21846 0.99410 0.90180 1.06694 1.21295 0.93716 0.80577 1.05010 1.47146 1.51927 1.22702 1.10298 1.21529 0.77474 0.86030 0.83073 1.90779 1.54730 1.70730 1.21755 1.20622 1.03321 0.93944 0.95048 0.84009 1.20152 1.02181 0.93555 0.97847 1.21237 0.97735 0.99885 0.97494 1.21485 1.03622 0.95706 0.93919 1.20994 0.98283 0.93940 1.01181 1.21487 1.03680 0.91092 0.94800 0.82687 1.22029 0.76589 0.87136 0.83001 1.90785 1.54053 1.71080 1.22246 0.92490 0.97253 0.97260 0.93455 0.93474 0.75199 0.86603 0.86597 0.89278 0.89354 0.91654 0.87458 0.89459 0.93914 0.88963 0.90454 0.89224 0.93704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 2 C 0.01 0.36 5.46 84.66 0.46 0.83 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 6.12 5.61 86.38 0.48 6.60 16 11 N -0.72 -25.27 5.56 -463.06 -2.57 -27.85 16 12 C 0.51 17.45 7.83 87.65 0.69 18.14 16 13 O -0.59 -24.63 15.98 -3.04 -0.05 -24.68 16 14 C -0.14 -3.43 6.02 29.85 0.18 -3.25 16 15 C 0.12 2.94 4.87 86.38 0.42 3.36 16 16 N -0.58 -11.60 2.57 -755.09 -1.94 -13.55 16 17 C 0.53 9.69 7.62 87.71 0.67 10.35 16 18 O -0.51 -13.00 17.02 -2.88 -0.05 -13.05 16 19 C -0.11 -0.93 2.62 -13.30 -0.03 -0.96 16 20 H 0.14 0.49 8.05 -2.39 -0.02 0.47 16 21 C -0.10 -0.64 5.22 28.57 0.15 -0.49 16 22 C -0.13 -0.79 5.99 29.87 0.18 -0.61 16 23 C -0.11 -0.42 5.97 30.49 0.18 -0.24 16 24 C -0.11 -0.81 5.28 29.86 0.16 -0.65 16 25 C -0.09 -0.75 3.29 -12.05 -0.04 -0.79 16 26 H 0.16 0.41 8.14 -2.38 -0.02 0.39 16 27 C 0.52 9.51 7.02 88.35 0.62 10.13 16 28 O -0.51 -13.00 17.53 -2.88 -0.05 -13.05 16 29 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.41 12.31 8.47 -92.71 -0.79 11.53 16 35 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.09 2.49 7.80 -2.39 -0.02 2.47 16 38 H 0.09 2.47 7.83 -2.39 -0.02 2.45 16 39 H 0.06 0.68 7.50 -2.39 -0.02 0.66 16 40 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 41 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.04 0.45 8.11 -2.39 -0.02 0.43 16 43 H 0.09 0.03 8.10 -2.39 -0.02 0.01 16 44 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 45 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.04 0.54 7.68 -2.39 -0.02 0.52 16 Total: -1.00 -76.51 378.97 2.35 -74.16 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.20 Total: 13.44 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 4.50 Total: 12.84 kcal Atomic # 7 Polarization: -91.54 SS G_CDS: -4.23 Total: -95.77 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.15 Total: -50.78 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -76.51 2.35 -74.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342642541.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.706 kcal (2) G-P(sol) polarization free energy of solvation -76.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds