Wall clock time and date at job start Fri Apr 10 2020 14:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48499 * 109.47063 * 239.99986 * 3 2 1 5 5 H 1.48506 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47139 * 119.99801 * 3 2 1 7 7 C 1.38819 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00035 * 163.00757 * 7 2 1 9 9 N 1.36939 * 120.00016 * 343.00393 * 7 2 1 10 10 C 1.46856 * 120.46923 * 151.93040 * 9 7 2 11 11 C 1.53316 * 109.10329 * 127.32779 * 10 9 7 12 12 C 1.52891 * 108.95205 * 54.10107 * 11 10 9 13 13 H 1.08997 * 109.53040 * 57.81008 * 12 11 10 14 14 C 1.53278 * 109.16415 * 297.89337 * 12 11 10 15 15 H 1.08997 * 109.47204 * 303.31825 * 14 12 11 16 16 C 1.52817 * 109.16755 * 183.50191 * 14 12 11 17 17 C 1.53146 * 109.26228 * 61.82439 * 16 14 12 18 18 C 1.53136 * 109.61436 * 299.15027 * 17 16 14 19 19 N 1.46713 * 110.29677 * 178.43769 * 12 11 10 20 20 C 1.34778 * 120.83823 * 354.17173 * 19 12 11 21 21 O 1.21731 * 120.00237 * 4.88957 * 20 19 12 22 22 C 1.46380 * 119.99570 * 184.89523 * 20 19 12 23 23 C 1.33977 * 119.23722 * 30.72792 * 22 20 19 24 24 O 1.34993 * 121.69410 * 180.12563 * 23 22 20 25 25 C 1.43247 * 116.82589 * 343.31594 * 24 23 22 26 26 C 1.53555 * 108.08659 * 45.25546 * 25 24 23 27 27 O 1.36216 * 119.22698 * 211.00363 * 22 20 19 28 28 C 1.47070 * 120.47066 * 331.91349 * 9 7 2 29 29 H 0.96993 * 120.00050 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.53925 * 7.44030 * 10 9 7 31 31 H 1.09002 * 109.59279 * 247.24580 * 10 9 7 32 32 H 1.08998 * 109.55397 * 294.26474 * 11 10 9 33 33 H 1.08997 * 109.56585 * 173.94421 * 11 10 9 34 34 H 1.09003 * 109.50729 * 181.75720 * 16 14 12 35 35 H 1.09001 * 109.51133 * 301.88257 * 16 14 12 36 36 H 1.08994 * 109.45096 * 59.19272 * 17 16 14 37 37 H 1.09004 * 109.44781 * 179.10845 * 17 16 14 38 38 H 1.09000 * 109.53819 * 173.86961 * 18 17 16 39 39 H 1.09003 * 109.53970 * 294.12163 * 18 17 16 40 40 H 1.08004 * 119.15056 * 0.37718 * 23 22 20 41 41 H 1.08997 * 109.74194 * 285.60946 * 25 24 23 42 42 H 1.08998 * 109.78149 * 164.92235 * 25 24 23 43 43 H 1.09004 * 109.75164 * 182.21607 * 26 25 24 44 44 H 1.08999 * 109.75395 * 61.47521 * 26 25 24 45 45 H 1.09001 * 109.69139 * 353.04906 * 28 9 7 46 46 H 1.08994 * 109.69656 * 113.59281 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2225 -0.2739 9 7 1.3705 -2.3624 0.3456 10 6 1.8179 -3.6507 -0.1993 11 6 2.0536 -4.6297 0.9567 12 6 0.7880 -4.7027 1.8115 13 1 -0.0532 -5.0123 1.1914 14 6 0.5032 -3.3198 2.4080 15 1 1.3694 -2.9848 2.9786 16 6 -0.7107 -3.4120 3.3317 17 6 -0.3988 -4.3744 4.4813 18 6 -0.0992 -5.7670 3.9191 19 7 0.9686 -5.6614 2.9073 20 6 2.0807 -6.4186 2.9866 21 8 2.9898 -6.2497 2.1948 22 6 2.1954 -7.4441 4.0249 23 6 1.0881 -8.0575 4.4638 24 8 1.1361 -9.0083 5.4209 25 6 2.4158 -9.5949 5.6858 26 6 3.4510 -8.4637 5.7677 27 8 3.4248 -7.7484 4.5263 28 6 0.2257 -2.3360 1.2686 29 1 -0.4850 0.8400 0.0004 30 1 2.7464 -3.5098 -0.7525 31 1 1.0537 -4.0509 -0.8657 32 1 2.8863 -4.2801 1.5669 33 1 2.2816 -5.6180 0.5574 34 1 -0.9372 -2.4249 3.7347 35 1 -1.5684 -3.7819 2.7698 36 1 0.4684 -4.0117 5.0332 37 1 -1.2571 -4.4303 5.1509 38 1 0.2281 -6.4231 4.7256 39 1 -0.9986 -6.1751 3.4578 40 1 0.1330 -7.7872 4.0381 41 1 2.6812 -10.2790 4.8798 42 1 2.3853 -10.1351 6.6320 43 1 4.4437 -8.8838 5.9299 44 1 3.1970 -7.7904 6.5863 45 1 0.1029 -1.3311 1.6727 46 1 -0.6798 -2.6322 0.7392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021510447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:23 Heat of formation + Delta-G solvation = -31.326811 kcal Electronic energy + Delta-G solvation = -29165.129459 eV Core-core repulsion = 25250.969344 eV Total energy + Delta-G solvation = -3914.160115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47619 -40.14351 -37.77597 -37.00553 -35.95127 -33.39006 -32.78104 -31.77119 -30.25003 -29.46130 -28.58633 -26.12036 -25.34836 -24.63926 -22.63512 -22.44891 -21.34432 -19.82231 -19.69608 -19.25863 -18.46695 -17.24773 -16.93833 -16.67285 -15.66449 -15.46119 -15.16304 -14.84755 -14.69205 -14.47622 -14.39057 -14.09813 -13.98654 -13.63044 -13.40224 -13.10654 -12.77705 -12.58494 -12.35382 -12.15638 -11.96762 -11.54790 -11.28166 -11.07323 -10.96716 -10.83795 -10.79276 -10.61941 -10.57404 -10.26493 -10.01559 -9.97572 -9.72543 -9.42855 -8.90184 -8.40700 -8.35147 -8.24213 -6.58803 -5.73870 -3.15132 1.27738 2.38240 2.88340 3.28345 3.42654 3.47398 3.50075 3.53098 4.00207 4.47018 4.51894 4.54771 4.61224 4.74363 4.84733 4.99934 5.02228 5.13039 5.16568 5.32314 5.41704 5.44950 5.52043 5.66754 5.67521 5.73884 5.90391 5.97087 6.14262 6.25903 6.31725 6.40837 6.45849 6.51503 6.60058 6.67096 6.82725 6.97921 7.02155 7.14161 7.24335 7.37776 7.56205 7.67147 7.85772 8.32207 8.51162 9.27013 9.90655 10.46958 11.34597 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.003445 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.735981 B = 8125.292372 C = 8595.287409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.594 5.594 10 C 0.139 3.861 11 C -0.118 4.118 12 C 0.160 3.840 13 H 0.069 0.931 14 C -0.121 4.121 15 H 0.067 0.933 16 C -0.113 4.113 17 C -0.132 4.132 18 C 0.079 3.921 19 N -0.598 5.598 20 C 0.571 3.429 21 O -0.508 6.508 22 C -0.060 4.060 23 C -0.024 4.024 24 O -0.304 6.304 25 C 0.014 3.986 26 C 0.018 3.982 27 O -0.286 6.286 28 C 0.183 3.817 29 H 0.253 0.747 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.194 0.806 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.375 -18.354 14.248 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.012 3.988 11 C -0.157 4.157 12 C 0.059 3.941 13 H 0.087 0.913 14 C -0.142 4.142 15 H 0.086 0.914 16 C -0.151 4.151 17 C -0.170 4.170 18 C -0.044 4.044 19 N -0.332 5.332 20 C 0.358 3.642 21 O -0.384 6.384 22 C -0.109 4.109 23 C -0.089 4.089 24 O -0.217 6.217 25 C -0.062 4.062 26 C -0.059 4.059 27 O -0.200 6.200 28 C 0.056 3.944 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.092 0.908 40 H 0.210 0.790 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -0.938 -18.144 13.814 22.823 hybrid contribution 0.420 0.762 0.272 0.911 sum -0.518 -17.382 14.086 22.379 Atomic orbital electron populations 1.70013 1.05185 1.25489 1.54318 1.25017 0.95287 0.98304 1.01068 0.86381 0.78925 0.83398 0.78162 1.20893 1.21681 1.21100 1.19188 0.92640 0.84889 1.41170 0.91756 1.44101 1.35821 1.01767 1.49890 1.21128 0.97626 0.86678 0.93335 1.22501 0.95563 0.99963 0.97701 1.21397 0.99372 0.87384 0.85934 0.91348 1.22289 0.97533 0.95606 0.98764 0.91411 1.21506 0.98474 0.99167 0.95941 1.21905 1.01773 0.94763 0.98543 1.22584 0.90621 0.99212 0.91944 1.48220 1.18396 1.39279 1.27332 1.17178 0.82704 0.80574 0.83765 1.90921 1.38321 1.68117 1.41072 1.20717 0.85594 1.02012 1.02592 1.23750 0.99383 0.91536 0.94185 1.86109 1.31589 1.51097 1.52872 1.23682 0.83144 0.95327 1.04022 1.23666 1.01928 0.94250 0.86012 1.86447 1.24192 1.72266 1.37077 1.20763 0.88738 0.97631 0.87222 0.93677 0.92584 0.96791 0.91166 0.90845 0.91464 0.91980 0.91668 0.90949 0.88466 0.90784 0.79007 0.90218 0.86241 0.86161 0.90473 0.89193 0.96242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.28 11.19 55.49 0.62 -25.66 16 2 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 3 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -7.03 9.57 -15.06 -0.14 -7.18 16 8 H 0.06 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -15.30 3.00 -172.26 -0.52 -15.81 16 10 C 0.14 3.14 6.50 -3.68 -0.02 3.12 16 11 C -0.12 -2.40 3.79 -26.62 -0.10 -2.50 16 12 C 0.16 2.86 2.62 -67.73 -0.18 2.68 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.12 -2.28 2.22 -90.53 -0.20 -2.48 16 15 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 16 C -0.11 -1.67 5.23 -26.75 -0.14 -1.81 16 17 C -0.13 -1.54 6.07 -26.59 -0.16 -1.70 16 18 C 0.08 0.87 4.67 -3.43 -0.02 0.85 16 19 N -0.60 -9.02 2.99 -166.62 -0.50 -9.51 16 20 C 0.57 9.52 7.41 -12.98 -0.10 9.42 16 21 O -0.51 -10.37 12.58 -6.02 -0.08 -10.45 16 22 C -0.06 -0.83 6.22 -37.81 -0.24 -1.06 16 23 C -0.02 -0.25 8.35 29.23 0.24 -0.01 16 24 O -0.30 -2.92 10.47 -30.80 -0.32 -3.24 16 25 C 0.01 0.10 7.30 37.45 0.27 0.37 16 26 C 0.02 0.14 7.31 37.45 0.27 0.42 16 27 O -0.29 -3.95 10.41 -43.99 -0.46 -4.41 16 28 C 0.18 4.30 4.62 -3.69 -0.02 4.29 16 29 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.06 1.27 7.92 -51.93 -0.41 0.86 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 1.60 7.16 -51.93 -0.37 1.23 16 33 H 0.07 1.48 6.43 -51.93 -0.33 1.15 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.10 0.93 4.21 -51.93 -0.22 0.71 16 39 H 0.07 0.68 8.02 -51.93 -0.42 0.26 16 40 H 0.19 1.70 5.25 -52.48 -0.28 1.42 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -33.72 347.30 -8.62 -42.34 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.97 Total: 0.10 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.61 Total: 4.36 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.39 Total: -50.99 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.86 Total: -18.10 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.72 -8.62 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021510447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.008 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds