Wall clock time and date at job start Fri Apr 10 2020 14:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00110 * 2 1 4 4 H 1.48499 * 109.47063 * 239.99986 * 3 2 1 5 5 H 1.48506 * 109.46979 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47139 * 119.99801 * 3 2 1 7 7 C 1.38819 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00035 * 163.00757 * 7 2 1 9 9 N 1.36939 * 120.00016 * 343.00393 * 7 2 1 10 10 C 1.46856 * 120.46923 * 151.93040 * 9 7 2 11 11 C 1.53316 * 109.10329 * 127.32779 * 10 9 7 12 12 C 1.52891 * 108.95205 * 54.10107 * 11 10 9 13 13 H 1.08997 * 109.53040 * 57.81008 * 12 11 10 14 14 C 1.53278 * 109.16415 * 297.89337 * 12 11 10 15 15 H 1.08997 * 109.47204 * 303.31825 * 14 12 11 16 16 C 1.52817 * 109.16755 * 183.50191 * 14 12 11 17 17 C 1.53146 * 109.26228 * 61.82439 * 16 14 12 18 18 C 1.53136 * 109.61436 * 299.15027 * 17 16 14 19 19 N 1.46713 * 110.29677 * 178.43769 * 12 11 10 20 20 C 1.34778 * 120.83823 * 354.17173 * 19 12 11 21 21 O 1.21731 * 120.00237 * 4.88957 * 20 19 12 22 22 C 1.46380 * 119.99570 * 184.89523 * 20 19 12 23 23 C 1.33977 * 119.23722 * 30.72792 * 22 20 19 24 24 O 1.34993 * 121.69410 * 180.12563 * 23 22 20 25 25 C 1.43247 * 116.82589 * 343.31594 * 24 23 22 26 26 C 1.53555 * 108.08659 * 45.25546 * 25 24 23 27 27 O 1.36216 * 119.22698 * 211.00363 * 22 20 19 28 28 C 1.47070 * 120.47066 * 331.91349 * 9 7 2 29 29 H 0.96993 * 120.00050 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.53925 * 7.44030 * 10 9 7 31 31 H 1.09002 * 109.59279 * 247.24580 * 10 9 7 32 32 H 1.08998 * 109.55397 * 294.26474 * 11 10 9 33 33 H 1.08997 * 109.56585 * 173.94421 * 11 10 9 34 34 H 1.09003 * 109.50729 * 181.75720 * 16 14 12 35 35 H 1.09001 * 109.51133 * 301.88257 * 16 14 12 36 36 H 1.08994 * 109.45096 * 59.19272 * 17 16 14 37 37 H 1.09004 * 109.44781 * 179.10845 * 17 16 14 38 38 H 1.09000 * 109.53819 * 173.86961 * 18 17 16 39 39 H 1.09003 * 109.53970 * 294.12163 * 18 17 16 40 40 H 1.08004 * 119.15056 * 0.37718 * 23 22 20 41 41 H 1.08997 * 109.74194 * 285.60946 * 25 24 23 42 42 H 1.08998 * 109.78149 * 164.92235 * 25 24 23 43 43 H 1.09004 * 109.75164 * 182.21607 * 26 25 24 44 44 H 1.08999 * 109.75395 * 61.47521 * 26 25 24 45 45 H 1.09001 * 109.69139 * 353.04906 * 28 9 7 46 46 H 1.08994 * 109.69656 * 113.59281 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0549 -1.2225 -0.2739 9 7 1.3705 -2.3624 0.3456 10 6 1.8179 -3.6507 -0.1993 11 6 2.0536 -4.6297 0.9567 12 6 0.7880 -4.7027 1.8115 13 1 -0.0532 -5.0123 1.1914 14 6 0.5032 -3.3198 2.4080 15 1 1.3694 -2.9848 2.9786 16 6 -0.7107 -3.4120 3.3317 17 6 -0.3988 -4.3744 4.4813 18 6 -0.0992 -5.7670 3.9191 19 7 0.9686 -5.6614 2.9073 20 6 2.0807 -6.4186 2.9866 21 8 2.9898 -6.2497 2.1948 22 6 2.1954 -7.4441 4.0249 23 6 1.0881 -8.0575 4.4638 24 8 1.1361 -9.0083 5.4209 25 6 2.4158 -9.5949 5.6858 26 6 3.4510 -8.4637 5.7677 27 8 3.4248 -7.7484 4.5263 28 6 0.2257 -2.3360 1.2686 29 1 -0.4850 0.8400 0.0004 30 1 2.7464 -3.5098 -0.7525 31 1 1.0537 -4.0509 -0.8657 32 1 2.8863 -4.2801 1.5669 33 1 2.2816 -5.6180 0.5574 34 1 -0.9372 -2.4249 3.7347 35 1 -1.5684 -3.7819 2.7698 36 1 0.4684 -4.0117 5.0332 37 1 -1.2571 -4.4303 5.1509 38 1 0.2281 -6.4231 4.7256 39 1 -0.9986 -6.1751 3.4578 40 1 0.1330 -7.7872 4.0381 41 1 2.6812 -10.2790 4.8798 42 1 2.3853 -10.1351 6.6320 43 1 4.4437 -8.8838 5.9299 44 1 3.1970 -7.7904 6.5863 45 1 0.1029 -1.3311 1.6727 46 1 -0.6798 -2.6322 0.7392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021510447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:22 Heat of formation + Delta-G solvation = -53.777534 kcal Electronic energy + Delta-G solvation = -29166.102995 eV Core-core repulsion = 25250.969344 eV Total energy + Delta-G solvation = -3915.133652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.42729 -41.29454 -39.12585 -37.98937 -37.41132 -34.89460 -34.28163 -33.01002 -31.74404 -30.90111 -29.70009 -27.31398 -26.96898 -25.70821 -24.27805 -23.92809 -22.47831 -21.26871 -20.99570 -20.42422 -19.28405 -18.72491 -18.25635 -17.77486 -17.07293 -16.67955 -16.56475 -16.07079 -15.77378 -15.61211 -15.49025 -15.33290 -15.21000 -15.14229 -14.82750 -14.50982 -14.06981 -13.94205 -13.70064 -13.57138 -13.20938 -13.12418 -12.83966 -12.73243 -12.46624 -12.22987 -12.08517 -12.00960 -11.91995 -11.77492 -11.59074 -11.57572 -11.34317 -11.04838 -10.59199 -10.26990 -9.62205 -9.18904 -8.66194 -7.88994 -5.34261 0.33199 1.35429 1.44237 1.46566 1.53736 2.00776 2.30563 2.49449 2.61481 3.23832 3.41991 3.52835 3.62056 3.78447 3.87486 3.92392 3.96241 3.99537 4.09685 4.24995 4.28234 4.31041 4.42797 4.47311 4.57846 4.63501 4.64695 4.71801 4.82309 4.84800 4.87146 4.95871 5.00644 5.10645 5.16087 5.28893 5.37927 5.44061 5.50956 5.57597 5.64873 5.76030 5.77797 6.25596 6.37924 6.43822 7.10660 7.13666 7.83618 8.35020 9.16479 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023829 B = 0.003445 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.735981 B = 8125.292372 C = 8595.287409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.044 4.044 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.271 4.271 8 H 0.056 0.944 9 N -0.613 5.613 10 C 0.138 3.862 11 C -0.098 4.098 12 C 0.167 3.833 13 H 0.081 0.919 14 C -0.108 4.108 15 H 0.037 0.963 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.074 3.926 19 N -0.595 5.595 20 C 0.564 3.436 21 O -0.563 6.563 22 C -0.096 4.096 23 C 0.019 3.981 24 O -0.303 6.303 25 C 0.012 3.988 26 C 0.010 3.990 27 O -0.325 6.325 28 C 0.192 3.808 29 H 0.252 0.748 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.216 0.784 41 H 0.082 0.918 42 H 0.159 0.841 43 H 0.143 0.857 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 -20.512 16.742 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.239 4.239 3 Si 0.793 3.207 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.401 4.401 8 H 0.074 0.926 9 N -0.337 5.337 10 C 0.012 3.988 11 C -0.137 4.137 12 C 0.065 3.935 13 H 0.099 0.901 14 C -0.129 4.129 15 H 0.056 0.944 16 C -0.147 4.147 17 C -0.162 4.162 18 C -0.046 4.046 19 N -0.328 5.328 20 C 0.353 3.647 21 O -0.443 6.443 22 C -0.144 4.144 23 C -0.047 4.047 24 O -0.215 6.215 25 C -0.063 4.063 26 C -0.065 4.065 27 O -0.240 6.240 28 C 0.066 3.934 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.232 0.768 41 H 0.100 0.900 42 H 0.176 0.824 43 H 0.161 0.839 44 H 0.101 0.899 45 H 0.075 0.925 46 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -2.581 -20.341 16.357 26.229 hybrid contribution 0.938 1.342 -0.448 1.698 sum -1.643 -18.999 15.908 24.834 Atomic orbital electron populations 1.70145 1.06315 1.26035 1.54914 1.25724 0.96153 1.01135 1.00936 0.85384 0.77732 0.79419 0.78163 1.20283 1.21212 1.20852 1.19430 0.92670 0.86404 1.41630 0.92642 1.44373 1.36266 1.02082 1.50929 1.21207 0.97084 0.86210 0.94330 1.22197 0.95947 0.98799 0.96743 1.21086 0.98032 0.87679 0.86721 0.90132 1.22016 0.98513 0.94893 0.97469 0.94401 1.21486 0.96598 1.00252 0.96358 1.21887 1.02902 0.93897 0.97521 1.22973 0.90498 0.99440 0.91702 1.48190 1.19275 1.38014 1.27310 1.17716 0.82071 0.80978 0.83915 1.90877 1.40146 1.69993 1.43285 1.20220 0.86803 1.03435 1.03969 1.24021 0.98955 0.89618 0.92061 1.86125 1.33216 1.50284 1.51923 1.23998 0.81404 0.94769 1.06099 1.24019 1.03886 0.94433 0.84155 1.86366 1.24714 1.73568 1.39332 1.20589 0.87640 0.97178 0.88012 0.93845 0.93698 0.96222 0.94335 0.90647 0.92055 0.90443 0.93041 0.86862 0.86376 0.87328 0.76801 0.89969 0.82389 0.83912 0.89859 0.92461 0.97391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.39 11.19 21.65 0.24 -55.15 16 2 C -0.04 -2.52 4.91 84.86 0.42 -2.10 16 3 Si 0.97 46.51 29.59 68.60 2.03 48.54 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.27 -15.98 9.57 84.03 0.80 -15.17 16 8 H 0.06 3.28 7.88 -2.91 -0.02 3.25 16 9 N -0.61 -33.14 3.00 -698.90 -2.10 -35.24 16 10 C 0.14 6.53 6.50 86.42 0.56 7.10 16 11 C -0.10 -4.16 3.79 30.66 0.12 -4.05 16 12 C 0.17 5.97 2.62 45.01 0.12 6.09 16 13 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 14 C -0.11 -4.15 2.22 -10.74 -0.02 -4.17 16 15 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 16 C -0.11 -3.05 5.23 30.58 0.16 -2.89 16 17 C -0.12 -2.48 6.07 30.69 0.19 -2.30 16 18 C 0.07 1.34 4.67 86.24 0.40 1.75 16 19 N -0.59 -17.21 2.99 -799.25 -2.39 -19.59 16 20 C 0.56 18.78 7.41 86.36 0.64 19.42 16 21 O -0.56 -24.04 12.58 6.24 0.08 -23.96 16 22 C -0.10 -2.50 6.22 23.42 0.15 -2.36 16 23 C 0.02 0.34 8.35 66.85 0.56 0.90 16 24 O -0.30 -4.51 10.47 -69.15 -0.72 -5.23 16 25 C 0.01 0.12 7.30 72.17 0.53 0.65 16 26 C 0.01 0.14 7.31 72.17 0.53 0.67 16 27 O -0.32 -8.77 10.41 -73.48 -0.77 -9.53 16 28 C 0.19 9.38 4.62 86.29 0.40 9.78 16 29 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.04 2.16 7.92 -2.39 -0.02 2.14 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.04 1.87 7.16 -2.39 -0.02 1.85 16 33 H 0.08 3.18 6.43 -2.39 -0.02 3.17 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.12 1.70 4.21 -2.39 -0.01 1.69 16 39 H 0.11 1.35 8.02 -2.39 -0.02 1.33 16 40 H 0.22 2.71 5.25 -2.91 -0.02 2.70 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 3.16 6.07 -2.39 -0.01 3.15 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -79.10 347.30 2.90 -76.21 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.98 Total: 10.64 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.54 Total: 13.32 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -4.24 Total: -109.98 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.41 Total: -38.72 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -79.10 2.90 -76.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021510447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.429 kcal (2) G-P(sol) polarization free energy of solvation -79.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds