Wall clock time and date at job start Fri Apr 10 2020 14:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00026 * 2 1 4 4 H 1.48503 * 109.47292 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47125 * 120.00220 * 3 2 1 6 6 H 1.48497 * 109.47206 * 240.00178 * 3 2 1 7 7 C 1.38805 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00538 * 196.47918 * 7 2 1 9 9 N 1.36936 * 119.99699 * 16.48430 * 7 2 1 10 10 C 1.46980 * 120.77298 * 207.89382 * 9 7 2 11 11 C 1.51141 * 109.01737 * 233.90576 * 10 9 7 12 12 C 1.53161 * 110.45857 * 305.48757 * 11 10 9 13 13 H 1.08995 * 110.06424 * 298.54378 * 12 11 10 14 14 C 1.53149 * 109.58977 * 59.71312 * 12 11 10 15 15 H 1.09003 * 109.24819 * 181.14594 * 14 12 11 16 16 C 1.52857 * 108.71476 * 62.00419 * 14 12 11 17 17 C 1.53234 * 109.28463 * 63.21981 * 16 14 12 18 18 C 1.53147 * 108.82272 * 298.14554 * 17 16 14 19 19 N 1.46947 * 109.01743 * 54.47808 * 18 17 16 20 20 C 1.34780 * 120.84144 * 126.00141 * 19 18 17 21 21 O 1.21735 * 120.00142 * 184.08808 * 20 19 18 22 22 C 1.46376 * 120.00061 * 4.09205 * 20 19 18 23 23 C 1.33979 * 119.23304 * 42.08263 * 22 20 19 24 24 O 1.34996 * 121.69049 * 180.12279 * 23 22 20 25 25 C 1.43252 * 116.82885 * 343.31943 * 24 23 22 26 26 C 1.53548 * 108.08364 * 45.25219 * 25 24 23 27 27 O 1.36215 * 119.23172 * 222.35723 * 22 20 19 28 28 C 1.46894 * 120.77679 * 28.17358 * 9 7 2 29 29 H 0.97000 * 119.99520 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.61062 * 354.08068 * 10 9 7 31 31 H 1.09001 * 109.61329 * 114.60010 * 10 9 7 32 32 H 1.09001 * 109.71530 * 184.73943 * 11 10 9 33 33 H 1.09001 * 108.28966 * 65.33881 * 11 10 9 34 34 H 1.08995 * 109.48859 * 182.39300 * 16 14 12 35 35 H 1.09006 * 109.49093 * 302.46664 * 16 14 12 36 36 H 1.08999 * 109.46694 * 178.54577 * 17 16 14 37 37 H 1.08997 * 110.12823 * 58.14414 * 17 16 14 38 38 H 1.08997 * 109.54298 * 294.61860 * 18 17 16 39 39 H 1.08996 * 109.54858 * 174.34444 * 18 17 16 40 40 H 1.07999 * 119.15288 * 0.37779 * 23 22 20 41 41 H 1.09000 * 109.73950 * 285.60389 * 25 24 23 42 42 H 1.08997 * 109.77984 * 164.92180 * 25 24 23 43 43 H 1.09007 * 109.75157 * 182.21653 * 26 25 24 44 44 H 1.09005 * 109.75998 * 61.47934 * 26 25 24 45 45 H 1.08995 * 109.51518 * 246.55769 * 28 9 7 46 46 H 1.09000 * 109.51034 * 6.66864 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0570 -1.2212 0.2659 9 7 1.3678 -2.3637 -0.3355 10 6 1.8165 -3.6547 0.2052 11 6 2.0631 -4.6094 -0.9403 12 6 0.8184 -4.7151 -1.8265 13 1 -0.0196 -5.1055 -1.2492 14 6 0.4703 -3.3341 -2.3897 15 1 -0.4277 -3.4120 -3.0028 16 6 1.6324 -2.8510 -3.2572 17 6 1.8022 -3.7988 -4.4493 18 6 2.1409 -5.1971 -3.9245 19 7 1.1115 -5.6090 -2.9601 20 6 0.4526 -6.7753 -3.1087 21 8 -0.4484 -7.0671 -2.3439 22 6 0.8204 -7.6911 -4.1897 23 6 2.1164 -7.8987 -4.4589 24 8 2.5113 -8.7307 -5.4459 25 6 1.5341 -9.6518 -5.9447 26 6 0.2208 -8.8850 -6.1566 27 8 -0.1629 -8.3082 -4.9022 28 6 0.2179 -2.3494 -1.2494 29 1 -0.4849 0.8401 0.0004 30 1 2.7366 -3.5139 0.7724 31 1 1.0438 -4.0684 0.8533 32 1 2.3152 -5.5953 -0.5495 33 1 2.8971 -4.2284 -1.5296 34 1 1.4160 -1.8501 -3.6305 35 1 2.5455 -2.8282 -2.6622 36 1 2.6136 -3.4425 -5.0839 37 1 0.8799 -3.8417 -5.0286 38 1 3.1136 -5.1764 -3.4330 39 1 2.1655 -5.9023 -4.7551 40 1 2.8643 -7.3904 -3.8684 41 1 1.3803 -10.4527 -5.2215 42 1 1.8725 -10.0713 -6.8921 43 1 -0.5546 -9.5702 -6.4995 44 1 0.3693 -8.0967 -6.8946 45 1 -0.6815 -2.6423 -0.7077 46 1 0.0880 -1.3463 -1.6554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021510448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:28 Heat of formation + Delta-G solvation = -53.535229 kcal Electronic energy + Delta-G solvation = -29172.073005 eV Core-core repulsion = 25256.949861 eV Total energy + Delta-G solvation = -3915.123144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.42768 -40.12610 -38.07518 -37.09972 -35.64022 -33.18898 -32.61662 -31.83223 -30.31744 -29.67320 -28.75830 -25.97403 -25.47991 -24.69344 -22.68659 -22.16664 -21.57637 -20.72398 -19.53509 -18.53411 -17.95552 -17.45981 -17.08303 -16.72615 -15.76997 -15.35352 -15.15714 -15.08097 -14.67554 -14.43847 -14.33338 -14.16234 -13.87090 -13.60555 -13.44775 -13.07454 -12.83052 -12.59927 -12.50655 -12.27475 -12.13282 -11.59531 -11.30468 -11.12960 -11.02812 -10.84699 -10.70778 -10.66392 -10.44000 -10.11548 -10.08810 -9.97912 -9.76013 -9.61133 -9.42570 -8.51673 -8.38879 -8.25190 -6.67342 -5.78979 -3.21583 1.33716 2.31113 2.86457 3.21551 3.37710 3.44132 3.44398 3.54401 3.99339 4.46637 4.48809 4.51954 4.63600 4.78296 4.93361 4.99477 5.14103 5.15294 5.19034 5.37808 5.44090 5.45726 5.48799 5.61441 5.68711 5.78179 5.87864 6.05490 6.08594 6.20268 6.35587 6.38765 6.45275 6.51171 6.53214 6.68315 6.77752 6.88985 6.94811 7.03845 7.13706 7.31879 7.51901 7.65628 7.78791 8.22675 8.44421 9.20642 9.83723 10.41357 11.29782 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028958 B = 0.003289 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.696984 B = 8510.249284 C = 8713.413704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.291 1.291 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.147 3.853 11 C -0.141 4.141 12 C 0.156 3.844 13 H 0.096 0.904 14 C -0.115 4.115 15 H 0.058 0.942 16 C -0.105 4.105 17 C -0.134 4.134 18 C 0.090 3.910 19 N -0.593 5.593 20 C 0.574 3.426 21 O -0.525 6.525 22 C -0.059 4.059 23 C -0.011 4.011 24 O -0.302 6.302 25 C 0.014 3.986 26 C 0.018 3.982 27 O -0.289 6.289 28 C 0.178 3.822 29 H 0.254 0.746 30 H 0.058 0.942 31 H 0.018 0.982 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.184 0.816 41 H 0.080 0.920 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.020 0.980 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 -16.102 -14.292 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.731 3.269 4 H -0.217 1.217 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.181 4.181 12 C 0.055 3.945 13 H 0.114 0.886 14 C -0.136 4.136 15 H 0.077 0.923 16 C -0.142 4.142 17 C -0.172 4.172 18 C -0.032 4.032 19 N -0.327 5.327 20 C 0.361 3.639 21 O -0.402 6.402 22 C -0.108 4.108 23 C -0.076 4.076 24 O -0.215 6.215 25 C -0.061 4.061 26 C -0.058 4.058 27 O -0.203 6.203 28 C 0.052 3.948 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.201 0.799 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.038 0.962 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.482 -16.140 -13.901 21.767 hybrid contribution 0.376 0.709 -0.255 0.842 sum 4.857 -15.431 -14.156 21.496 Atomic orbital electron populations 1.70011 1.05227 1.25612 1.53776 1.25035 0.95247 0.98324 1.00865 0.86397 0.78906 0.83509 0.78090 1.21702 1.20944 1.21051 1.19096 0.92311 0.84589 1.42062 0.91739 1.44018 1.35238 1.01460 1.50384 1.20484 0.98044 0.86793 0.92667 1.22070 0.97538 0.99512 0.98959 1.21402 0.98663 0.88955 0.85453 0.88590 1.22060 0.97504 0.94851 0.99208 0.92335 1.21494 1.00107 0.97772 0.94842 1.21995 1.01677 0.94685 0.98816 1.22160 0.91236 0.97530 0.92306 1.48375 1.38699 1.18416 1.27168 1.17183 0.82254 0.80855 0.83634 1.90842 1.29407 1.74726 1.45252 1.20520 0.88005 1.02435 0.99826 1.23244 0.94855 0.95756 0.93785 1.86107 1.38754 1.47036 1.49633 1.23687 0.89333 0.91364 1.01760 1.23665 0.98369 0.98571 0.85206 1.86432 1.32598 1.69682 1.31559 1.20704 0.88738 0.97805 0.87589 0.93554 0.92339 0.96400 0.92915 0.91603 0.92103 0.90295 0.91155 0.92007 0.90874 0.89668 0.79915 0.90202 0.86191 0.86153 0.90414 0.96158 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.18 55.49 0.62 -25.07 16 2 C 0.00 0.11 4.93 -17.43 -0.09 0.02 16 3 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.25 -6.60 9.60 -15.06 -0.14 -6.75 16 8 H 0.06 1.66 7.88 -52.48 -0.41 1.25 16 9 N -0.59 -14.08 2.61 -173.79 -0.45 -14.54 16 10 C 0.15 3.00 6.44 -4.72 -0.03 2.97 16 11 C -0.14 -2.41 4.93 -27.58 -0.14 -2.54 16 12 C 0.16 2.78 2.64 -67.33 -0.18 2.60 16 13 H 0.10 1.94 7.05 -51.93 -0.37 1.57 16 14 C -0.12 -2.16 2.49 -90.74 -0.23 -2.39 16 15 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.10 -1.75 4.82 -26.68 -0.13 -1.87 16 17 C -0.13 -1.72 6.12 -26.53 -0.16 -1.89 16 18 C 0.09 1.09 4.39 -3.72 -0.02 1.07 16 19 N -0.59 -9.07 2.67 -166.52 -0.45 -9.51 16 20 C 0.57 9.64 7.37 -12.98 -0.10 9.54 16 21 O -0.53 -10.96 16.56 -1.35 -0.02 -10.98 16 22 C -0.06 -0.81 5.88 -37.81 -0.22 -1.04 16 23 C -0.01 -0.12 8.30 29.23 0.24 0.12 16 24 O -0.30 -2.97 10.47 -30.81 -0.32 -3.29 16 25 C 0.01 0.10 7.30 37.44 0.27 0.37 16 26 C 0.02 0.14 7.31 37.44 0.27 0.42 16 27 O -0.29 -3.92 10.47 -41.94 -0.44 -4.36 16 28 C 0.18 4.13 4.70 -3.95 -0.02 4.11 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.06 1.16 7.94 -51.92 -0.41 0.74 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.09 5.36 -51.93 -0.28 0.81 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.42 6.05 -51.93 -0.31 1.10 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 39 H 0.09 0.89 4.71 -51.93 -0.24 0.64 16 40 H 0.18 1.74 6.46 -52.49 -0.34 1.40 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 LS Contribution 348.78 15.07 5.26 5.26 Total: -1.00 -32.39 348.78 -8.34 -40.73 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.85 Total: 0.83 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.66 Total: 4.76 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.28 Total: -49.12 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.78 Total: -18.63 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.39 -8.34 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021510448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.804 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds