Wall clock time and date at job start Fri Apr 10 2020 14:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00026 * 2 1 4 4 H 1.48503 * 109.47292 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47125 * 120.00220 * 3 2 1 6 6 H 1.48497 * 109.47206 * 240.00178 * 3 2 1 7 7 C 1.38805 * 120.00199 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00538 * 196.47918 * 7 2 1 9 9 N 1.36936 * 119.99699 * 16.48430 * 7 2 1 10 10 C 1.46980 * 120.77298 * 207.89382 * 9 7 2 11 11 C 1.51141 * 109.01737 * 233.90576 * 10 9 7 12 12 C 1.53161 * 110.45857 * 305.48757 * 11 10 9 13 13 H 1.08995 * 110.06424 * 298.54378 * 12 11 10 14 14 C 1.53149 * 109.58977 * 59.71312 * 12 11 10 15 15 H 1.09003 * 109.24819 * 181.14594 * 14 12 11 16 16 C 1.52857 * 108.71476 * 62.00419 * 14 12 11 17 17 C 1.53234 * 109.28463 * 63.21981 * 16 14 12 18 18 C 1.53147 * 108.82272 * 298.14554 * 17 16 14 19 19 N 1.46947 * 109.01743 * 54.47808 * 18 17 16 20 20 C 1.34780 * 120.84144 * 126.00141 * 19 18 17 21 21 O 1.21735 * 120.00142 * 184.08808 * 20 19 18 22 22 C 1.46376 * 120.00061 * 4.09205 * 20 19 18 23 23 C 1.33979 * 119.23304 * 42.08263 * 22 20 19 24 24 O 1.34996 * 121.69049 * 180.12279 * 23 22 20 25 25 C 1.43252 * 116.82885 * 343.31943 * 24 23 22 26 26 C 1.53548 * 108.08364 * 45.25219 * 25 24 23 27 27 O 1.36215 * 119.23172 * 222.35723 * 22 20 19 28 28 C 1.46894 * 120.77679 * 28.17358 * 9 7 2 29 29 H 0.97000 * 119.99520 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.61062 * 354.08068 * 10 9 7 31 31 H 1.09001 * 109.61329 * 114.60010 * 10 9 7 32 32 H 1.09001 * 109.71530 * 184.73943 * 11 10 9 33 33 H 1.09001 * 108.28966 * 65.33881 * 11 10 9 34 34 H 1.08995 * 109.48859 * 182.39300 * 16 14 12 35 35 H 1.09006 * 109.49093 * 302.46664 * 16 14 12 36 36 H 1.08999 * 109.46694 * 178.54577 * 17 16 14 37 37 H 1.08997 * 110.12823 * 58.14414 * 17 16 14 38 38 H 1.08997 * 109.54298 * 294.61860 * 18 17 16 39 39 H 1.08996 * 109.54858 * 174.34444 * 18 17 16 40 40 H 1.07999 * 119.15288 * 0.37779 * 23 22 20 41 41 H 1.09000 * 109.73950 * 285.60389 * 25 24 23 42 42 H 1.08997 * 109.77984 * 164.92180 * 25 24 23 43 43 H 1.09007 * 109.75157 * 182.21653 * 26 25 24 44 44 H 1.09005 * 109.75998 * 61.47934 * 26 25 24 45 45 H 1.08995 * 109.51518 * 246.55769 * 28 9 7 46 46 H 1.09000 * 109.51034 * 6.66864 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0570 -1.2212 0.2659 9 7 1.3678 -2.3637 -0.3355 10 6 1.8165 -3.6547 0.2052 11 6 2.0631 -4.6094 -0.9403 12 6 0.8184 -4.7151 -1.8265 13 1 -0.0196 -5.1055 -1.2492 14 6 0.4703 -3.3341 -2.3897 15 1 -0.4277 -3.4120 -3.0028 16 6 1.6324 -2.8510 -3.2572 17 6 1.8022 -3.7988 -4.4493 18 6 2.1409 -5.1971 -3.9245 19 7 1.1115 -5.6090 -2.9601 20 6 0.4526 -6.7753 -3.1087 21 8 -0.4484 -7.0671 -2.3439 22 6 0.8204 -7.6911 -4.1897 23 6 2.1164 -7.8987 -4.4589 24 8 2.5113 -8.7307 -5.4459 25 6 1.5341 -9.6518 -5.9447 26 6 0.2208 -8.8850 -6.1566 27 8 -0.1629 -8.3082 -4.9022 28 6 0.2179 -2.3494 -1.2494 29 1 -0.4849 0.8401 0.0004 30 1 2.7366 -3.5139 0.7724 31 1 1.0438 -4.0684 0.8533 32 1 2.3152 -5.5953 -0.5495 33 1 2.8971 -4.2284 -1.5296 34 1 1.4160 -1.8501 -3.6305 35 1 2.5455 -2.8282 -2.6622 36 1 2.6136 -3.4425 -5.0839 37 1 0.8799 -3.8417 -5.0286 38 1 3.1136 -5.1764 -3.4330 39 1 2.1655 -5.9023 -4.7551 40 1 2.8643 -7.3904 -3.8684 41 1 1.3803 -10.4527 -5.2215 42 1 1.8725 -10.0713 -6.8921 43 1 -0.5546 -9.5702 -6.4995 44 1 0.3693 -8.0967 -6.8946 45 1 -0.6815 -2.6423 -0.7077 46 1 0.0880 -1.3463 -1.6554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021510448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:26 Heat of formation + Delta-G solvation = -74.434532 kcal Electronic energy + Delta-G solvation = -29172.979267 eV Core-core repulsion = 25256.949861 eV Total energy + Delta-G solvation = -3916.029406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.36787 -41.31840 -39.46359 -37.98461 -37.15294 -34.68086 -34.10013 -32.96656 -31.77855 -31.18764 -29.75078 -27.28687 -26.93411 -25.81908 -24.24877 -23.56085 -22.98815 -21.96998 -20.47891 -19.56195 -19.33638 -18.57220 -18.43790 -17.95900 -17.04979 -16.83623 -16.45015 -16.03750 -15.91495 -15.64965 -15.51366 -15.21848 -15.09694 -15.05100 -14.76373 -14.53862 -14.21093 -14.04340 -13.80920 -13.62030 -13.26325 -13.06513 -12.89090 -12.58568 -12.48900 -12.23913 -11.99604 -11.95479 -11.85455 -11.81771 -11.61203 -11.45445 -11.31000 -11.07698 -10.88357 -10.50079 -9.69346 -9.19071 -8.67029 -7.84201 -5.29969 0.38353 1.26222 1.50343 1.51932 1.58733 1.90892 2.29396 2.53983 2.60940 3.32020 3.42613 3.50890 3.64230 3.77681 3.86553 3.94712 3.99451 4.01296 4.08206 4.22117 4.25183 4.36971 4.44007 4.48177 4.53483 4.63599 4.64899 4.75507 4.83263 4.87197 4.91661 4.99087 5.04730 5.10850 5.13441 5.21671 5.32932 5.43173 5.53399 5.61718 5.68524 5.71180 5.77873 6.24855 6.40362 6.41096 6.99565 7.16412 7.86451 8.40859 9.23023 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028958 B = 0.003289 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.696984 B = 8510.249284 C = 8713.413704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.051 4.051 3 Si 0.966 3.034 4 H -0.300 1.300 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.254 4.254 8 H 0.073 0.927 9 N -0.601 5.601 10 C 0.143 3.857 11 C -0.124 4.124 12 C 0.163 3.837 13 H 0.062 0.938 14 C -0.106 4.106 15 H 0.050 0.950 16 C -0.097 4.097 17 C -0.125 4.125 18 C 0.088 3.912 19 N -0.587 5.587 20 C 0.570 3.430 21 O -0.582 6.582 22 C -0.091 4.091 23 C 0.028 3.972 24 O -0.303 6.303 25 C 0.011 3.989 26 C 0.011 3.989 27 O -0.325 6.325 28 C 0.189 3.811 29 H 0.248 0.752 30 H 0.069 0.931 31 H 0.002 0.998 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.203 0.797 41 H 0.081 0.919 42 H 0.159 0.841 43 H 0.145 0.855 44 H 0.086 0.914 45 H -0.018 1.018 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -17.728 -16.888 25.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.227 1.227 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.384 4.384 8 H 0.091 0.909 9 N -0.324 5.324 10 C 0.017 3.983 11 C -0.164 4.164 12 C 0.060 3.940 13 H 0.080 0.920 14 C -0.127 4.127 15 H 0.068 0.932 16 C -0.135 4.135 17 C -0.163 4.163 18 C -0.033 4.033 19 N -0.319 5.319 20 C 0.360 3.640 21 O -0.463 6.463 22 C -0.139 4.139 23 C -0.038 4.038 24 O -0.215 6.215 25 C -0.063 4.063 26 C -0.064 4.064 27 O -0.240 6.240 28 C 0.063 3.937 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.020 0.980 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.219 0.781 41 H 0.099 0.901 42 H 0.177 0.823 43 H 0.162 0.838 44 H 0.104 0.896 45 H 0.000 1.000 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.933 -17.796 -16.540 25.558 hybrid contribution -0.699 1.118 0.528 1.420 sum 7.235 -16.678 -16.012 24.225 Atomic orbital electron populations 1.70195 1.06860 1.25790 1.55695 1.25803 0.95887 1.01532 1.01360 0.85361 0.77482 0.79240 0.78474 1.22667 1.20227 1.19916 1.19467 0.92746 0.85417 1.40771 0.90913 1.44218 1.35007 1.02291 1.50881 1.20628 0.97747 0.85935 0.93978 1.21865 0.97348 0.99591 0.97572 1.21025 0.98093 0.88457 0.86378 0.91961 1.21825 0.98567 0.94566 0.97701 0.93186 1.21393 0.98159 0.98131 0.95803 1.21947 1.02946 0.94114 0.97263 1.22472 0.90974 0.97359 0.92499 1.48300 1.39175 1.17641 1.26823 1.17723 0.81257 0.81255 0.83814 1.90805 1.31993 1.76115 1.47403 1.20019 0.89042 1.04183 1.00706 1.23464 0.93849 0.94039 0.92447 1.86123 1.39714 1.46887 1.48778 1.24015 0.88318 0.90512 1.03495 1.24033 0.99847 0.99223 0.83281 1.86356 1.33725 1.70364 1.33569 1.20404 0.87508 0.97275 0.88538 0.94281 0.91305 0.97985 0.90791 0.89882 0.93583 0.90946 0.87768 0.92348 0.88391 0.87214 0.78082 0.90063 0.82335 0.83773 0.89552 1.00032 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.88 11.18 21.65 0.24 -55.64 16 2 C -0.05 -2.79 4.93 84.86 0.42 -2.37 16 3 Si 0.97 44.09 29.58 68.60 2.03 46.12 16 4 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.25 -13.49 9.60 84.03 0.81 -12.68 16 8 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 9 N -0.60 -29.54 2.61 -703.75 -1.84 -31.38 16 10 C 0.14 5.88 6.44 85.68 0.55 6.43 16 11 C -0.12 -4.09 4.93 30.04 0.15 -3.94 16 12 C 0.16 5.87 2.64 44.94 0.12 5.99 16 13 H 0.06 2.68 7.05 -2.39 -0.02 2.66 16 14 C -0.11 -4.10 2.49 -10.87 -0.03 -4.12 16 15 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 16 C -0.10 -3.15 4.82 30.62 0.15 -3.00 16 17 C -0.12 -2.83 6.12 30.72 0.19 -2.64 16 18 C 0.09 1.79 4.39 86.34 0.38 2.17 16 19 N -0.59 -17.24 2.67 -798.94 -2.14 -19.38 16 20 C 0.57 19.01 7.37 86.36 0.64 19.65 16 21 O -0.58 -25.33 16.56 1.77 0.03 -25.30 16 22 C -0.09 -2.36 5.88 23.42 0.14 -2.22 16 23 C 0.03 0.51 8.30 66.85 0.55 1.07 16 24 O -0.30 -4.59 10.47 -69.18 -0.72 -5.31 16 25 C 0.01 0.11 7.30 72.17 0.53 0.64 16 26 C 0.01 0.14 7.31 72.17 0.53 0.67 16 27 O -0.32 -8.45 10.47 -75.44 -0.79 -9.24 16 28 C 0.19 9.33 4.70 86.23 0.41 9.74 16 29 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.07 2.66 7.94 -2.38 -0.02 2.64 16 31 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.08 2.49 5.36 -2.39 -0.01 2.48 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.07 2.45 6.05 -2.38 -0.01 2.44 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.10 1.61 7.31 -2.39 -0.02 1.59 16 39 H 0.11 1.77 4.71 -2.39 -0.01 1.76 16 40 H 0.20 2.83 6.46 -2.91 -0.02 2.81 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.14 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 45 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 46 H 0.06 3.43 6.06 -2.39 -0.01 3.42 16 Total: -1.00 -75.88 348.78 3.32 -72.56 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.99 Total: 12.20 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: 5.52 Total: 15.37 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.73 Total: -106.40 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -1.48 Total: -39.86 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -75.88 3.32 -72.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021510448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.873 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds