Wall clock time and date at job start Fri Apr 10 2020 14:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00030 * 2 1 4 4 H 1.48498 * 109.47130 * 269.99913 * 3 2 1 5 5 H 1.48501 * 109.47382 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.46982 * 150.00117 * 3 2 1 7 7 C 1.38813 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 164.14463 * 7 2 1 9 9 N 1.36938 * 119.99722 * 344.13913 * 7 2 1 10 10 C 1.46983 * 120.77076 * 152.74597 * 9 7 2 11 11 C 1.53096 * 108.62067 * 125.71015 * 10 9 7 12 12 C 1.53167 * 109.57999 * 55.34034 * 11 10 9 13 13 H 1.09005 * 110.65961 * 60.98160 * 12 11 10 14 14 C 1.53143 * 109.58867 * 299.42319 * 12 11 10 15 15 H 1.08997 * 109.25818 * 178.81452 * 14 12 11 16 16 C 1.52858 * 109.36086 * 298.35713 * 14 12 11 17 17 C 1.53117 * 109.34212 * 297.96362 * 16 14 12 18 18 C 1.52714 * 109.54548 * 60.52353 * 17 16 14 19 19 N 1.46944 * 109.26313 * 306.15758 * 18 17 16 20 20 C 1.34781 * 120.84375 * 233.99501 * 19 18 17 21 21 O 1.21743 * 119.99677 * 183.76318 * 20 19 18 22 22 C 1.46374 * 120.00138 * 3.76942 * 20 19 18 23 23 C 1.33976 * 119.22747 * 324.06241 * 22 20 19 24 24 O 1.35003 * 121.68239 * 180.37370 * 23 22 20 25 25 C 1.43246 * 116.76475 * 342.81243 * 24 23 22 26 26 C 1.53547 * 108.08826 * 45.49636 * 25 24 23 27 27 O 1.36215 * 119.23038 * 144.06282 * 22 20 19 28 28 C 1.46889 * 120.77879 * 332.76990 * 9 7 2 29 29 H 0.97004 * 119.99761 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.61222 * 245.45016 * 10 9 7 31 31 H 1.09005 * 109.61120 * 5.79691 * 10 9 7 32 32 H 1.08996 * 109.45463 * 295.30876 * 11 10 9 33 33 H 1.08991 * 109.45094 * 175.37346 * 11 10 9 34 34 H 1.08994 * 109.49680 * 57.92828 * 16 14 12 35 35 H 1.09000 * 109.49358 * 177.98121 * 16 14 12 36 36 H 1.08999 * 109.47249 * 180.64886 * 17 16 14 37 37 H 1.08999 * 109.46994 * 300.65285 * 17 16 14 38 38 H 1.08995 * 109.46589 * 186.19650 * 18 17 16 39 39 H 1.09000 * 109.38915 * 66.06708 * 18 17 16 40 40 H 1.07991 * 119.16117 * 0.37013 * 23 22 20 41 41 H 1.09000 * 109.73694 * 165.14111 * 25 24 23 42 42 H 1.09002 * 109.74262 * 285.84293 * 25 24 23 43 43 H 1.08997 * 109.75921 * 61.46724 * 26 25 24 44 44 H 1.09000 * 109.75466 * 182.16663 * 26 25 24 45 45 H 1.09004 * 109.51601 * 113.41307 * 28 9 7 46 46 H 1.09001 * 109.56611 * 353.27424 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0594 -1.2198 -0.2561 9 7 1.3645 -2.3656 0.3231 10 6 1.8268 -3.6553 -0.2092 11 6 2.0634 -4.6114 0.9628 12 6 0.7884 -4.7164 1.8050 13 1 -0.0348 -5.1107 1.2090 14 6 0.4228 -3.3357 2.3575 15 1 -0.4964 -3.4128 2.9382 16 6 1.5499 -2.8370 3.2616 17 6 1.7088 -3.7921 4.4478 18 6 2.0597 -5.1877 3.9366 19 7 1.0581 -5.6074 2.9467 20 6 0.3990 -6.7751 3.0829 21 8 -0.3772 -7.1402 2.2190 22 6 0.6164 -7.6042 4.2694 23 6 1.8405 -7.6633 4.8109 24 8 2.0982 -8.4177 5.9004 25 6 0.9689 -8.8431 6.6723 26 6 -0.1041 -9.3592 5.7028 27 8 -0.4305 -8.2976 4.7972 28 6 0.1935 -2.3538 1.2098 29 1 -0.4850 0.8401 0.0004 30 1 1.0681 -4.0704 -0.8725 31 1 2.7560 -3.5116 -0.7608 32 1 2.8769 -4.2328 1.5816 33 1 2.3276 -5.5969 0.5797 34 1 2.4810 -2.8013 2.6961 35 1 1.3082 -1.8391 3.6275 36 1 2.5045 -3.4321 5.1001 37 1 0.7737 -3.8368 5.0060 38 1 2.0644 -5.8894 4.7706 39 1 3.0452 -5.1655 3.4714 40 1 2.6414 -7.0929 4.3644 41 1 1.2670 -9.6423 7.3509 42 1 0.5754 -8.0021 7.2433 43 1 0.2824 -10.2127 5.1458 44 1 -0.9927 -9.6551 6.2603 45 1 -0.6919 -2.6509 0.6477 46 1 0.0501 -1.3508 1.6117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021510449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:33 Heat of formation + Delta-G solvation = -38.831479 kcal Electronic energy + Delta-G solvation = -29195.449953 eV Core-core repulsion = 25280.964411 eV Total energy + Delta-G solvation = -3914.485542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.49299 -40.10749 -38.05514 -37.10209 -35.68203 -33.29408 -32.59170 -31.80996 -30.33257 -29.63574 -28.71057 -26.15740 -25.43020 -24.68276 -22.65983 -22.20887 -21.58076 -20.71491 -19.78303 -18.53183 -17.97865 -17.30265 -16.98650 -16.53605 -16.21138 -15.33592 -15.08881 -15.04480 -14.78864 -14.53460 -14.42379 -13.99072 -13.94124 -13.50075 -13.31870 -13.03420 -12.80731 -12.67076 -12.35740 -12.23368 -12.17386 -11.56239 -11.34947 -11.08892 -10.95691 -10.82680 -10.70822 -10.64363 -10.43304 -10.11922 -10.07888 -9.97957 -9.78698 -9.62746 -9.42237 -8.52524 -8.37195 -8.20438 -6.67857 -5.78670 -3.21003 1.25474 2.46041 2.89447 3.12798 3.36681 3.44165 3.45391 3.55004 3.99655 4.46626 4.48853 4.50736 4.61883 4.76337 4.87340 4.99130 5.13073 5.16282 5.18801 5.37708 5.43959 5.47466 5.49559 5.60108 5.67093 5.76620 5.87926 6.05014 6.08935 6.20403 6.31821 6.39815 6.45155 6.51241 6.53096 6.68750 6.77920 6.88781 6.95109 7.03363 7.12225 7.32733 7.52725 7.67270 7.78707 8.24005 8.44171 9.20757 9.83964 10.40996 11.29744 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.003323 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.247364 B = 8424.388438 C = 8729.169568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.248 4.248 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.147 3.853 11 C -0.141 4.141 12 C 0.158 3.842 13 H 0.096 0.904 14 C -0.116 4.116 15 H 0.057 0.943 16 C -0.104 4.104 17 C -0.134 4.134 18 C 0.071 3.929 19 N -0.593 5.593 20 C 0.573 3.427 21 O -0.528 6.528 22 C -0.060 4.060 23 C -0.024 4.024 24 O -0.302 6.302 25 C 0.013 3.987 26 C 0.018 3.982 27 O -0.287 6.287 28 C 0.176 3.824 29 H 0.254 0.746 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.199 0.801 41 H 0.120 0.880 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.121 0.879 45 H 0.019 0.981 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.200 -15.619 14.934 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.020 3.980 11 C -0.181 4.181 12 C 0.057 3.943 13 H 0.115 0.885 14 C -0.137 4.137 15 H 0.075 0.925 16 C -0.141 4.141 17 C -0.172 4.172 18 C -0.051 4.051 19 N -0.327 5.327 20 C 0.361 3.639 21 O -0.405 6.405 22 C -0.109 4.109 23 C -0.089 4.089 24 O -0.215 6.215 25 C -0.062 4.062 26 C -0.058 4.058 27 O -0.200 6.200 28 C 0.050 3.950 29 H 0.064 0.936 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.215 0.785 41 H 0.138 0.862 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.139 0.861 45 H 0.037 0.963 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.645 -15.697 14.498 21.677 hybrid contribution 0.297 0.735 0.235 0.827 sum 3.942 -14.962 14.733 21.365 Atomic orbital electron populations 1.70009 1.05210 1.25449 1.54118 1.25024 0.95274 0.98298 1.01039 0.86324 0.79099 0.83800 0.77698 1.21475 1.21636 1.20527 1.19146 0.92170 0.84497 1.41990 0.91669 1.44052 1.33408 1.01473 1.52219 1.20860 0.97946 0.86773 0.92446 1.22407 0.97072 0.99537 0.99041 1.21451 0.98700 0.88789 0.85378 0.88546 1.22049 0.97537 0.94875 0.99231 0.92464 1.21443 1.00317 0.97637 0.94724 1.21886 1.01676 0.94686 0.98966 1.22562 0.92055 0.98009 0.92524 1.48342 1.39904 1.18459 1.25953 1.17119 0.81118 0.80950 0.84735 1.90843 1.36343 1.71004 1.42306 1.20522 0.89386 1.02559 0.98439 1.23824 0.98236 0.97264 0.89562 1.86122 1.33367 1.65558 1.36451 1.23710 0.87323 1.01704 0.93488 1.23662 1.00829 0.89389 0.91938 1.86436 1.29065 1.45377 1.59155 1.20760 0.88372 0.98040 0.87831 0.93624 0.96172 0.92420 0.91539 0.92949 0.90452 0.91956 0.91119 0.92088 0.88179 0.90604 0.78468 0.86215 0.90115 0.90478 0.86127 0.96254 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.67 11.07 55.49 0.61 -25.06 16 2 C 0.00 0.05 4.96 -17.43 -0.09 -0.03 16 3 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.25 -6.54 9.61 -15.06 -0.14 -6.68 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.27 16 9 N -0.59 -14.12 2.64 -172.61 -0.46 -14.57 16 10 C 0.15 3.01 6.52 -3.73 -0.02 2.99 16 11 C -0.14 -2.42 5.02 -26.60 -0.13 -2.56 16 12 C 0.16 2.82 2.65 -67.33 -0.18 2.64 16 13 H 0.10 1.96 7.08 -51.93 -0.37 1.59 16 14 C -0.12 -2.17 2.45 -90.73 -0.22 -2.39 16 15 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 16 C -0.10 -1.72 4.86 -26.74 -0.13 -1.85 16 17 C -0.13 -1.71 6.06 -26.82 -0.16 -1.87 16 18 C 0.07 0.84 4.40 -3.95 -0.02 0.82 16 19 N -0.59 -9.10 2.66 -166.77 -0.44 -9.54 16 20 C 0.57 9.68 7.46 -12.99 -0.10 9.58 16 21 O -0.53 -11.03 16.54 -4.30 -0.07 -11.10 16 22 C -0.06 -0.83 6.24 -37.81 -0.24 -1.07 16 23 C -0.02 -0.26 8.40 29.23 0.25 -0.01 16 24 O -0.30 -2.95 10.47 -30.83 -0.32 -3.27 16 25 C 0.01 0.09 7.29 37.44 0.27 0.36 16 26 C 0.02 0.15 7.31 37.44 0.27 0.42 16 27 O -0.29 -3.94 10.44 -43.24 -0.45 -4.39 16 28 C 0.18 4.10 4.70 -3.95 -0.02 4.08 16 29 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 1.15 7.94 -51.93 -0.41 0.73 16 32 H 0.07 1.11 5.33 -51.93 -0.28 0.83 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.39 6.15 -51.93 -0.32 1.07 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.00 3.62 -53.17 -0.19 0.81 16 39 H 0.08 0.82 7.27 -51.93 -0.38 0.44 16 40 H 0.20 1.82 5.26 -52.49 -0.28 1.54 16 41 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.10 2.48 5.96 -51.93 -0.31 2.17 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -32.56 347.03 -8.32 -40.88 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.73 Total: 1.26 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.66 Total: 4.42 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.29 Total: -49.17 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.85 Total: -18.77 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.56 -8.32 -40.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021510449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.045 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds