Wall clock time and date at job start Fri Apr 10 2020 14:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00030 * 2 1 4 4 H 1.48498 * 109.47130 * 269.99913 * 3 2 1 5 5 H 1.48501 * 109.47382 * 30.00192 * 3 2 1 6 6 H 1.48503 * 109.46982 * 150.00117 * 3 2 1 7 7 C 1.38813 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99764 * 164.14463 * 7 2 1 9 9 N 1.36938 * 119.99722 * 344.13913 * 7 2 1 10 10 C 1.46983 * 120.77076 * 152.74597 * 9 7 2 11 11 C 1.53096 * 108.62067 * 125.71015 * 10 9 7 12 12 C 1.53167 * 109.57999 * 55.34034 * 11 10 9 13 13 H 1.09005 * 110.65961 * 60.98160 * 12 11 10 14 14 C 1.53143 * 109.58867 * 299.42319 * 12 11 10 15 15 H 1.08997 * 109.25818 * 178.81452 * 14 12 11 16 16 C 1.52858 * 109.36086 * 298.35713 * 14 12 11 17 17 C 1.53117 * 109.34212 * 297.96362 * 16 14 12 18 18 C 1.52714 * 109.54548 * 60.52353 * 17 16 14 19 19 N 1.46944 * 109.26313 * 306.15758 * 18 17 16 20 20 C 1.34781 * 120.84375 * 233.99501 * 19 18 17 21 21 O 1.21743 * 119.99677 * 183.76318 * 20 19 18 22 22 C 1.46374 * 120.00138 * 3.76942 * 20 19 18 23 23 C 1.33976 * 119.22747 * 324.06241 * 22 20 19 24 24 O 1.35003 * 121.68239 * 180.37370 * 23 22 20 25 25 C 1.43246 * 116.76475 * 342.81243 * 24 23 22 26 26 C 1.53547 * 108.08826 * 45.49636 * 25 24 23 27 27 O 1.36215 * 119.23038 * 144.06282 * 22 20 19 28 28 C 1.46889 * 120.77879 * 332.76990 * 9 7 2 29 29 H 0.97004 * 119.99761 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.61222 * 245.45016 * 10 9 7 31 31 H 1.09005 * 109.61120 * 5.79691 * 10 9 7 32 32 H 1.08996 * 109.45463 * 295.30876 * 11 10 9 33 33 H 1.08991 * 109.45094 * 175.37346 * 11 10 9 34 34 H 1.08994 * 109.49680 * 57.92828 * 16 14 12 35 35 H 1.09000 * 109.49358 * 177.98121 * 16 14 12 36 36 H 1.08999 * 109.47249 * 180.64886 * 17 16 14 37 37 H 1.08999 * 109.46994 * 300.65285 * 17 16 14 38 38 H 1.08995 * 109.46589 * 186.19650 * 18 17 16 39 39 H 1.09000 * 109.38915 * 66.06708 * 18 17 16 40 40 H 1.07991 * 119.16117 * 0.37013 * 23 22 20 41 41 H 1.09000 * 109.73694 * 165.14111 * 25 24 23 42 42 H 1.09002 * 109.74262 * 285.84293 * 25 24 23 43 43 H 1.08997 * 109.75921 * 61.46724 * 26 25 24 44 44 H 1.09000 * 109.75466 * 182.16663 * 26 25 24 45 45 H 1.09004 * 109.51601 * 113.41307 * 28 9 7 46 46 H 1.09001 * 109.56611 * 353.27424 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0594 -1.2198 -0.2561 9 7 1.3645 -2.3656 0.3231 10 6 1.8268 -3.6553 -0.2092 11 6 2.0634 -4.6114 0.9628 12 6 0.7884 -4.7164 1.8050 13 1 -0.0348 -5.1107 1.2090 14 6 0.4228 -3.3357 2.3575 15 1 -0.4964 -3.4128 2.9382 16 6 1.5499 -2.8370 3.2616 17 6 1.7088 -3.7921 4.4478 18 6 2.0597 -5.1877 3.9366 19 7 1.0581 -5.6074 2.9467 20 6 0.3990 -6.7751 3.0829 21 8 -0.3772 -7.1402 2.2190 22 6 0.6164 -7.6042 4.2694 23 6 1.8405 -7.6633 4.8109 24 8 2.0982 -8.4177 5.9004 25 6 0.9689 -8.8431 6.6723 26 6 -0.1041 -9.3592 5.7028 27 8 -0.4305 -8.2976 4.7972 28 6 0.1935 -2.3538 1.2098 29 1 -0.4850 0.8401 0.0004 30 1 1.0681 -4.0704 -0.8725 31 1 2.7560 -3.5116 -0.7608 32 1 2.8769 -4.2328 1.5816 33 1 2.3276 -5.5969 0.5797 34 1 2.4810 -2.8013 2.6961 35 1 1.3082 -1.8391 3.6275 36 1 2.5045 -3.4321 5.1001 37 1 0.7737 -3.8368 5.0060 38 1 2.0644 -5.8894 4.7706 39 1 3.0452 -5.1655 3.4714 40 1 2.6414 -7.0929 4.3644 41 1 1.2670 -9.6423 7.3509 42 1 0.5754 -8.0021 7.2433 43 1 0.2824 -10.2127 5.1458 44 1 -0.9927 -9.6551 6.2603 45 1 -0.6919 -2.6509 0.6477 46 1 0.0501 -1.3508 1.6117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021510449.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:32 Heat of formation + Delta-G solvation = -59.860491 kcal Electronic energy + Delta-G solvation = -29196.361839 eV Core-core repulsion = 25280.964411 eV Total energy + Delta-G solvation = -3915.397428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.44242 -41.29080 -39.43398 -38.02361 -37.16905 -34.77614 -34.05278 -33.01901 -31.76055 -31.12948 -29.74525 -27.37915 -27.00430 -25.78853 -24.21482 -23.60232 -23.00134 -21.93963 -20.78548 -19.57559 -19.33701 -18.54870 -18.30496 -17.69549 -17.28859 -16.94121 -16.34578 -16.11776 -15.96322 -15.77148 -15.43362 -15.29185 -15.16147 -15.04196 -14.63990 -14.57633 -14.21319 -14.01870 -13.59922 -13.54538 -13.20852 -13.15477 -12.89475 -12.54706 -12.49632 -12.20323 -12.01594 -11.95550 -11.80968 -11.74398 -11.63330 -11.44829 -11.29667 -11.11169 -10.90180 -10.50846 -9.69266 -9.15176 -8.67550 -7.83694 -5.29297 0.28569 1.40094 1.49925 1.51053 1.60495 1.96063 2.18830 2.54033 2.60861 3.32535 3.41360 3.49152 3.64710 3.77084 3.86472 3.92850 3.96284 3.99797 4.08513 4.21284 4.24459 4.37089 4.42969 4.46547 4.51997 4.60879 4.64586 4.73096 4.83018 4.83853 4.91945 4.99445 5.05125 5.10924 5.13969 5.22690 5.32557 5.43008 5.53187 5.62813 5.68480 5.72006 5.77231 6.23026 6.39947 6.41074 7.00638 7.16485 7.86611 8.40499 9.23242 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028499 B = 0.003323 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.247364 B = 8424.388438 C = 8729.169568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.052 4.052 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.265 1.265 7 C -0.252 4.252 8 H 0.073 0.927 9 N -0.601 5.601 10 C 0.142 3.858 11 C -0.123 4.123 12 C 0.164 3.836 13 H 0.062 0.938 14 C -0.106 4.106 15 H 0.049 0.951 16 C -0.097 4.097 17 C -0.125 4.125 18 C 0.067 3.933 19 N -0.588 5.588 20 C 0.568 3.432 21 O -0.585 6.585 22 C -0.095 4.095 23 C 0.018 3.982 24 O -0.303 6.303 25 C 0.011 3.989 26 C 0.009 3.991 27 O -0.322 6.322 28 C 0.187 3.813 29 H 0.248 0.752 30 H 0.004 0.996 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.220 0.780 41 H 0.158 0.842 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.147 0.853 45 H -0.019 1.019 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.407 -17.024 17.912 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.189 1.189 7 C -0.382 4.382 8 H 0.091 0.909 9 N -0.324 5.324 10 C 0.016 3.984 11 C -0.163 4.163 12 C 0.062 3.938 13 H 0.080 0.920 14 C -0.126 4.126 15 H 0.068 0.932 16 C -0.135 4.135 17 C -0.163 4.163 18 C -0.053 4.053 19 N -0.320 5.320 20 C 0.358 3.642 21 O -0.466 6.466 22 C -0.143 4.143 23 C -0.048 4.048 24 O -0.215 6.215 25 C -0.063 4.063 26 C -0.066 4.066 27 O -0.237 6.237 28 C 0.061 3.939 29 H 0.057 0.943 30 H 0.022 0.978 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.235 0.765 41 H 0.175 0.825 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.164 0.836 45 H -0.001 1.001 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.906 -17.131 17.521 25.459 hybrid contribution -0.724 1.070 -0.666 1.453 sum 6.182 -16.062 16.856 24.089 Atomic orbital electron populations 1.70194 1.06823 1.25674 1.55940 1.25788 0.95926 1.01485 1.01525 0.85290 0.78241 0.79626 0.77367 1.21614 1.22324 1.18910 1.19510 0.92596 0.85321 1.40745 0.90889 1.44249 1.33203 1.02254 1.52715 1.20999 0.97643 0.85964 0.93776 1.22205 0.96949 0.99445 0.97672 1.21066 0.98092 0.88386 0.86301 0.91973 1.21818 0.98597 0.94475 0.97753 0.93230 1.21348 0.98352 0.98084 0.95668 1.21844 1.03023 0.93989 0.97422 1.22904 0.91844 0.97913 0.92614 1.48259 1.40380 1.17673 1.25712 1.17663 0.80080 0.81233 0.85189 1.90804 1.38864 1.72562 1.44400 1.20046 0.90805 1.04634 0.98834 1.24056 0.97102 0.94988 0.88663 1.86139 1.34812 1.64688 1.35825 1.24047 0.86048 1.03173 0.93032 1.24022 1.02768 0.88118 0.91649 1.86366 1.30005 1.46840 1.60539 1.20470 0.87155 0.97543 0.88764 0.94294 0.97777 0.91431 0.89756 0.91141 0.91201 0.93350 0.87588 0.92310 0.85607 0.88149 0.76467 0.82491 0.89242 0.90405 0.83572 1.00138 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.76 11.07 21.65 0.24 -55.52 16 2 C -0.05 -2.88 4.96 84.86 0.42 -2.46 16 3 Si 0.97 44.07 29.58 68.60 2.03 46.10 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.25 -13.38 9.61 84.03 0.81 -12.57 16 8 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 9 N -0.60 -29.62 2.64 -700.03 -1.85 -31.47 16 10 C 0.14 5.90 6.52 86.32 0.56 6.47 16 11 C -0.12 -4.12 5.02 30.68 0.15 -3.96 16 12 C 0.16 5.95 2.65 44.94 0.12 6.07 16 13 H 0.06 2.69 7.08 -2.38 -0.02 2.68 16 14 C -0.11 -4.08 2.45 -10.87 -0.03 -4.11 16 15 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 16 C -0.10 -3.11 4.86 30.59 0.15 -2.96 16 17 C -0.12 -2.76 6.06 30.54 0.19 -2.57 16 18 C 0.07 1.34 4.40 86.20 0.38 1.72 16 19 N -0.59 -17.35 2.66 -799.75 -2.13 -19.48 16 20 C 0.57 19.11 7.46 86.36 0.64 19.76 16 21 O -0.58 -25.56 16.54 4.55 0.08 -25.49 16 22 C -0.09 -2.48 6.24 23.42 0.15 -2.33 16 23 C 0.02 0.32 8.40 66.85 0.56 0.88 16 24 O -0.30 -4.52 10.47 -69.26 -0.73 -5.24 16 25 C 0.01 0.11 7.29 72.17 0.53 0.64 16 26 C 0.01 0.13 7.31 72.17 0.53 0.66 16 27 O -0.32 -8.57 10.44 -74.19 -0.77 -9.34 16 28 C 0.19 9.23 4.70 86.23 0.40 9.63 16 29 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.07 2.64 7.94 -2.38 -0.02 2.62 16 32 H 0.08 2.56 5.33 -2.39 -0.01 2.54 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.07 2.37 6.15 -2.39 -0.01 2.35 16 35 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.13 1.90 3.62 -3.55 -0.01 1.89 16 39 H 0.10 1.62 7.27 -2.39 -0.02 1.60 16 40 H 0.22 2.89 5.26 -2.92 -0.02 2.88 16 41 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 43 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.15 1.18 8.14 -2.39 -0.02 1.16 16 45 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 46 H 0.07 3.65 5.96 -2.39 -0.01 3.63 16 Total: -1.00 -76.49 347.03 3.42 -73.07 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.99 Total: 12.52 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 5.56 Total: 14.86 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -3.74 Total: -106.48 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -1.42 Total: -40.07 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -76.49 3.42 -73.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021510449.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.210 kcal (2) G-P(sol) polarization free energy of solvation -76.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds