Wall clock time and date at job start Fri Apr 10 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47042 * 274.98546 * 3 2 1 5 5 H 1.48500 * 109.46878 * 34.98449 * 3 2 1 6 6 H 1.48498 * 109.47282 * 154.98348 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99957 * 186.97545 * 7 2 1 9 9 N 1.36936 * 120.00552 * 6.97173 * 7 2 1 10 10 C 1.45992 * 125.54393 * 354.30509 * 9 7 2 11 11 C 1.54895 * 107.28663 * 180.34555 * 10 9 7 12 12 H 1.09002 * 112.57310 * 143.00610 * 11 10 9 13 13 O 1.42791 * 107.17656 * 266.41798 * 11 10 9 14 14 C 1.42619 * 115.83992 * 166.91815 * 13 11 10 15 15 C 1.53572 * 108.29181 * 295.39648 * 14 13 11 16 16 N 1.47040 * 107.23618 * 55.94551 * 15 14 13 17 17 C 1.34776 * 120.03821 * 130.35153 * 16 15 14 18 18 O 1.21281 * 119.99692 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00397 * 0.02562 * 17 16 15 20 20 H 1.09003 * 110.66386 * 56.78365 * 19 17 16 21 21 C 1.56784 * 110.90630 * 292.47240 * 19 17 16 22 22 C 1.55822 * 102.92873 * 241.74728 * 21 19 17 23 23 H 1.09001 * 115.38125 * 159.04976 * 22 21 19 24 24 C 1.55825 * 105.32511 * 287.51645 * 22 21 19 25 25 C 1.54999 * 102.78487 * 72.69203 * 24 22 21 26 26 C 1.55820 * 110.75101 * 179.97438 * 19 17 16 27 27 H 1.08998 * 115.38677 * 319.66650 * 26 19 17 28 28 O 1.46528 * 101.91956 * 85.86362 * 26 19 17 29 29 C 1.45526 * 119.92256 * 310.63187 * 16 15 14 30 30 H 1.09004 * 110.30114 * 165.29961 * 29 16 15 31 31 C 1.47606 * 125.64574 * 174.23632 * 9 7 2 32 32 H 0.97000 * 120.00034 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.06836 * 60.80471 * 10 9 7 34 34 H 1.08996 * 109.63288 * 299.64614 * 10 9 7 35 35 H 1.08996 * 109.69109 * 175.69764 * 14 13 11 36 36 H 1.08999 * 109.69739 * 55.10016 * 14 13 11 37 37 H 1.08998 * 109.90420 * 296.51154 * 15 14 13 38 38 H 1.09000 * 109.89994 * 175.37653 * 15 14 13 39 39 H 1.08992 * 110.50111 * 123.45185 * 21 19 17 40 40 H 1.09005 * 110.85798 * 0.20301 * 21 19 17 41 41 H 1.08998 * 110.74603 * 191.01328 * 24 22 21 42 42 H 1.09004 * 110.74771 * 314.37146 * 24 22 21 43 43 H 1.09004 * 110.74832 * 118.32596 * 25 24 22 44 44 H 1.08997 * 110.75214 * 241.67540 * 25 24 22 45 45 H 1.09000 * 110.42158 * 37.70954 * 31 9 7 46 46 H 1.08999 * 110.42361 * 275.23372 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0842 -1.2056 0.1141 9 7 1.3331 -2.3838 -0.1429 10 6 -0.1188 -2.5301 -0.1868 11 6 -0.4245 -4.0397 -0.3503 12 1 -1.3069 -4.3509 0.2089 13 8 -0.5646 -4.2925 -1.7487 14 6 -0.5614 -5.6652 -2.1356 15 6 0.8177 -6.2555 -1.8068 16 7 1.0603 -6.0248 -0.3751 17 6 1.4635 -7.0409 0.4132 18 8 1.6630 -6.8499 1.5941 19 6 1.6666 -8.4143 -0.1728 20 1 2.3830 -8.3802 -0.9937 21 6 0.3010 -9.0365 -0.6267 22 6 0.1833 -10.3081 0.2661 23 1 -0.8255 -10.7034 0.3856 24 6 1.2304 -11.3108 -0.3052 25 6 2.5783 -10.6957 0.1499 26 6 2.1317 -9.4191 0.9237 27 1 2.8559 -9.0284 1.6386 28 8 0.8548 -9.8612 1.4903 29 6 0.8585 -4.6994 0.1911 30 1 0.8261 -4.7539 1.2793 31 6 1.9502 -3.7176 -0.2798 32 1 -0.4850 0.8400 0.0004 33 1 -0.5252 -1.9757 -1.0326 34 1 -0.5522 -2.1625 0.7433 35 1 -0.7498 -5.7455 -3.2062 36 1 -1.3325 -6.2039 -1.5849 37 1 1.5854 -5.7567 -2.3984 38 1 0.8230 -7.3251 -2.0165 39 1 0.3369 -9.3073 -1.6818 40 1 -0.5225 -8.3497 -0.4310 41 1 1.0924 -12.3016 0.1276 42 1 1.1723 -11.3518 -1.3930 43 1 3.1120 -11.3800 0.8095 44 1 3.1919 -10.4301 -0.7109 45 1 2.8320 -3.7958 0.3562 46 1 2.2121 -3.9106 -1.3201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083200792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:10 Heat of formation + Delta-G solvation = -61.883093 kcal Electronic energy + Delta-G solvation = -29182.572715 eV Core-core repulsion = 25267.087580 eV Total energy + Delta-G solvation = -3915.485135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.41879 -40.01115 -38.09422 -35.85812 -34.73577 -32.71768 -32.20506 -31.05738 -29.97836 -29.81295 -27.76818 -27.33563 -24.63807 -23.37781 -23.24508 -22.03155 -20.87448 -20.31626 -20.06888 -18.53249 -17.55380 -17.05569 -16.99848 -16.48381 -15.88477 -15.52946 -15.08787 -14.84730 -14.76259 -14.52254 -14.26942 -14.01702 -13.52999 -13.38395 -12.87931 -12.80441 -12.70784 -12.17155 -12.09690 -11.93180 -11.81091 -11.76172 -11.40072 -11.31830 -11.19469 -11.07615 -10.99987 -10.78427 -10.76752 -10.54754 -10.17205 -10.11499 -9.90555 -9.80629 -9.61818 -9.47300 -8.63289 -8.25576 -6.84483 -5.73222 -3.05778 2.66596 2.93765 3.42199 3.47226 3.49301 3.55891 4.07976 4.13824 4.17985 4.38884 4.49626 4.51387 4.58480 4.74205 4.84262 4.85343 4.94058 4.97067 5.11972 5.15111 5.17928 5.27421 5.37857 5.42992 5.49171 5.53125 5.58830 5.65289 5.67511 5.70844 5.74121 5.81523 5.84783 5.85050 6.05382 6.21312 6.31632 6.53942 6.62691 6.83249 7.31190 7.45823 7.52406 7.77147 7.87215 8.22811 8.28058 9.20974 9.80147 10.44872 11.39307 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.003247 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.066896 B = 8621.639594 C = 9087.426790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.189 3.811 11 C 0.056 3.944 12 H 0.070 0.930 13 O -0.364 6.364 14 C 0.048 3.952 15 C 0.068 3.932 16 N -0.598 5.598 17 C 0.522 3.478 18 O -0.530 6.530 19 C -0.140 4.140 20 H 0.109 0.891 21 C -0.137 4.137 22 C 0.059 3.941 23 H 0.131 0.869 24 C -0.148 4.148 25 C -0.150 4.150 26 C 0.089 3.911 27 H 0.136 0.864 28 O -0.362 6.362 29 C 0.097 3.903 30 H 0.109 0.891 31 C 0.137 3.863 32 H 0.254 0.746 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.042 0.958 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -23.429 -5.655 24.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.064 3.936 11 C -0.003 4.003 12 H 0.088 0.912 13 O -0.283 6.283 14 C -0.030 4.030 15 C -0.055 4.055 16 N -0.331 5.331 17 C 0.309 3.691 18 O -0.406 6.406 19 C -0.161 4.161 20 H 0.127 0.873 21 C -0.175 4.175 22 C 0.001 3.999 23 H 0.149 0.851 24 C -0.186 4.186 25 C -0.188 4.188 26 C 0.031 3.969 27 H 0.154 0.846 28 O -0.280 6.280 29 C -0.007 4.007 30 H 0.127 0.873 31 C 0.010 3.990 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.025 -22.920 -4.883 23.435 hybrid contribution 0.533 0.654 -0.252 0.880 sum 0.558 -22.267 -5.136 22.858 Atomic orbital electron populations 1.69928 1.04927 1.25251 1.56669 1.24823 0.95739 0.97715 1.01933 0.86073 0.78670 0.83395 0.77483 1.21583 1.21727 1.20610 1.19054 0.91194 0.82198 1.43255 0.90256 1.44099 1.01371 1.00995 1.86198 1.21191 0.85157 0.85464 1.01772 1.24001 0.94911 1.00220 0.81134 0.91226 1.87959 1.93641 1.22470 1.24201 1.22838 0.94622 0.84844 1.00732 1.22627 0.99351 1.01689 0.81848 1.47613 1.67126 1.09425 1.08908 1.20334 0.76733 0.85537 0.86457 1.90711 1.50434 1.83763 1.15721 1.23376 0.99351 0.93151 1.00236 0.87313 1.23625 0.96064 0.97654 1.00193 1.24696 0.97522 0.93414 0.84280 0.85118 1.23266 0.94823 0.99448 1.01064 1.23285 0.97602 0.97384 1.00515 1.24475 0.87407 0.91895 0.93148 0.84621 1.90174 1.28080 1.82007 1.27770 1.22408 0.97659 0.80730 0.99921 0.87263 1.21593 0.94142 0.85658 0.97624 0.93586 0.91687 0.92498 0.88217 0.93352 0.90179 0.89113 0.89540 0.90192 0.90741 0.90476 0.90422 0.90412 0.94000 0.95821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.34 55.49 0.57 -26.58 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.50 10.26 -15.06 -0.15 -6.66 16 8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 9 N -0.60 -15.75 3.37 -170.83 -0.58 -16.33 16 10 C 0.19 4.71 5.01 -3.32 -0.02 4.69 16 11 C 0.06 1.11 4.00 -25.16 -0.10 1.01 16 12 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 13 O -0.36 -6.74 9.98 -35.23 -0.35 -7.09 16 14 C 0.05 0.61 7.02 37.45 0.26 0.87 16 15 C 0.07 0.80 5.96 -3.45 -0.02 0.78 16 16 N -0.60 -9.19 2.76 -164.68 -0.45 -9.65 16 17 C 0.52 7.99 6.92 -10.99 -0.08 7.91 16 18 O -0.53 -10.35 15.33 5.56 0.09 -10.26 16 19 C -0.14 -1.46 1.93 -88.22 -0.17 -1.63 16 20 H 0.11 0.89 7.53 -51.93 -0.39 0.50 16 21 C -0.14 -1.14 4.49 -23.18 -0.10 -1.25 16 22 C 0.06 0.50 5.71 -23.72 -0.14 0.37 16 23 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 24 C -0.15 -0.97 6.52 -24.17 -0.16 -1.13 16 25 C -0.15 -1.12 6.52 -24.17 -0.16 -1.27 16 26 C 0.09 0.97 4.54 -23.72 -0.11 0.86 16 27 H 0.14 1.62 7.80 -51.93 -0.40 1.21 16 28 O -0.36 -4.68 11.65 -35.23 -0.41 -5.09 16 29 C 0.10 1.88 3.19 -67.26 -0.21 1.67 16 30 H 0.11 2.33 7.08 -51.93 -0.37 1.96 16 31 C 0.14 3.02 6.80 -2.81 -0.02 3.00 16 32 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.07 1.81 7.19 -51.93 -0.37 1.44 16 34 H 0.06 1.53 7.55 -51.93 -0.39 1.14 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.99 7.60 -51.93 -0.39 0.60 16 38 H 0.09 0.74 4.62 -51.93 -0.24 0.50 16 39 H 0.09 0.47 7.43 -51.93 -0.39 0.08 16 40 H 0.08 0.78 7.73 -51.93 -0.40 0.38 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.37 7.80 -51.93 -0.41 -0.03 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 45 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.02 0.52 7.34 -51.93 -0.38 0.14 16 LS Contribution 349.28 15.07 5.26 5.26 Total: -1.00 -34.53 349.28 -9.21 -43.74 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.05 Total: -0.28 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.27 Total: 8.97 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.46 Total: -52.56 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.68 Total: -22.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.53 -9.21 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083200792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.141 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds