Wall clock time and date at job start Fri Apr 10 2020 14:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48500 * 109.47042 * 274.98546 * 3 2 1 5 5 H 1.48500 * 109.46878 * 34.98449 * 3 2 1 6 6 H 1.48498 * 109.47282 * 154.98348 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99957 * 186.97545 * 7 2 1 9 9 N 1.36936 * 120.00552 * 6.97173 * 7 2 1 10 10 C 1.45992 * 125.54393 * 354.30509 * 9 7 2 11 11 C 1.54895 * 107.28663 * 180.34555 * 10 9 7 12 12 H 1.09002 * 112.57310 * 143.00610 * 11 10 9 13 13 O 1.42791 * 107.17656 * 266.41798 * 11 10 9 14 14 C 1.42619 * 115.83992 * 166.91815 * 13 11 10 15 15 C 1.53572 * 108.29181 * 295.39648 * 14 13 11 16 16 N 1.47040 * 107.23618 * 55.94551 * 15 14 13 17 17 C 1.34776 * 120.03821 * 130.35153 * 16 15 14 18 18 O 1.21281 * 119.99692 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00397 * 0.02562 * 17 16 15 20 20 H 1.09003 * 110.66386 * 56.78365 * 19 17 16 21 21 C 1.56784 * 110.90630 * 292.47240 * 19 17 16 22 22 C 1.55822 * 102.92873 * 241.74728 * 21 19 17 23 23 H 1.09001 * 115.38125 * 159.04976 * 22 21 19 24 24 C 1.55825 * 105.32511 * 287.51645 * 22 21 19 25 25 C 1.54999 * 102.78487 * 72.69203 * 24 22 21 26 26 C 1.55820 * 110.75101 * 179.97438 * 19 17 16 27 27 H 1.08998 * 115.38677 * 319.66650 * 26 19 17 28 28 O 1.46528 * 101.91956 * 85.86362 * 26 19 17 29 29 C 1.45526 * 119.92256 * 310.63187 * 16 15 14 30 30 H 1.09004 * 110.30114 * 165.29961 * 29 16 15 31 31 C 1.47606 * 125.64574 * 174.23632 * 9 7 2 32 32 H 0.97000 * 120.00034 * 359.97438 * 1 2 3 33 33 H 1.08998 * 110.06836 * 60.80471 * 10 9 7 34 34 H 1.08996 * 109.63288 * 299.64614 * 10 9 7 35 35 H 1.08996 * 109.69109 * 175.69764 * 14 13 11 36 36 H 1.08999 * 109.69739 * 55.10016 * 14 13 11 37 37 H 1.08998 * 109.90420 * 296.51154 * 15 14 13 38 38 H 1.09000 * 109.89994 * 175.37653 * 15 14 13 39 39 H 1.08992 * 110.50111 * 123.45185 * 21 19 17 40 40 H 1.09005 * 110.85798 * 0.20301 * 21 19 17 41 41 H 1.08998 * 110.74603 * 191.01328 * 24 22 21 42 42 H 1.09004 * 110.74771 * 314.37146 * 24 22 21 43 43 H 1.09004 * 110.74832 * 118.32596 * 25 24 22 44 44 H 1.08997 * 110.75214 * 241.67540 * 25 24 22 45 45 H 1.09000 * 110.42158 * 37.70954 * 31 9 7 46 46 H 1.08999 * 110.42361 * 275.23372 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4120 0.5920 7 6 2.0101 -1.2022 0.0005 8 1 3.0842 -1.2056 0.1141 9 7 1.3331 -2.3838 -0.1429 10 6 -0.1188 -2.5301 -0.1868 11 6 -0.4245 -4.0397 -0.3503 12 1 -1.3069 -4.3509 0.2089 13 8 -0.5646 -4.2925 -1.7487 14 6 -0.5614 -5.6652 -2.1356 15 6 0.8177 -6.2555 -1.8068 16 7 1.0603 -6.0248 -0.3751 17 6 1.4635 -7.0409 0.4132 18 8 1.6630 -6.8499 1.5941 19 6 1.6666 -8.4143 -0.1728 20 1 2.3830 -8.3802 -0.9937 21 6 0.3010 -9.0365 -0.6267 22 6 0.1833 -10.3081 0.2661 23 1 -0.8255 -10.7034 0.3856 24 6 1.2304 -11.3108 -0.3052 25 6 2.5783 -10.6957 0.1499 26 6 2.1317 -9.4191 0.9237 27 1 2.8559 -9.0284 1.6386 28 8 0.8548 -9.8612 1.4903 29 6 0.8585 -4.6994 0.1911 30 1 0.8261 -4.7539 1.2793 31 6 1.9502 -3.7176 -0.2798 32 1 -0.4850 0.8400 0.0004 33 1 -0.5252 -1.9757 -1.0326 34 1 -0.5522 -2.1625 0.7433 35 1 -0.7498 -5.7455 -3.2062 36 1 -1.3325 -6.2039 -1.5849 37 1 1.5854 -5.7567 -2.3984 38 1 0.8230 -7.3251 -2.0165 39 1 0.3369 -9.3073 -1.6818 40 1 -0.5225 -8.3497 -0.4310 41 1 1.0924 -12.3016 0.1276 42 1 1.1723 -11.3518 -1.3930 43 1 3.1120 -11.3800 0.8095 44 1 3.1919 -10.4301 -0.7109 45 1 2.8320 -3.7958 0.3562 46 1 2.2121 -3.9106 -1.3201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083200792.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:10 Heat of formation + Delta-G solvation = -87.166719 kcal Electronic energy + Delta-G solvation = -29183.669095 eV Core-core repulsion = 25267.087580 eV Total energy + Delta-G solvation = -3916.581515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.35896 -41.21259 -39.42499 -37.56471 -36.05866 -34.34160 -33.29964 -31.95199 -31.34451 -30.63264 -29.27777 -29.03069 -26.50149 -24.50713 -24.30729 -22.78394 -22.28509 -21.72073 -21.03856 -19.76771 -19.09944 -18.53015 -18.05021 -17.67937 -16.96548 -16.90133 -16.45570 -16.13671 -15.99584 -15.79241 -15.40724 -15.25795 -14.94200 -14.74464 -14.24358 -14.18018 -13.77260 -13.56946 -13.50300 -13.01543 -12.84121 -12.77840 -12.68960 -12.56467 -12.49316 -12.46184 -12.18062 -12.07530 -12.00178 -11.86088 -11.83272 -11.47186 -11.39105 -11.09425 -10.91333 -10.78102 -10.66907 -9.62379 -8.96575 -7.90861 -5.27287 1.44772 1.47439 1.50518 1.56469 1.73389 2.47326 2.78013 2.88533 3.26607 3.29833 3.42158 3.49540 3.57458 3.71370 3.79191 3.85331 3.95240 4.00812 4.07129 4.10447 4.23429 4.27535 4.28215 4.33737 4.41743 4.47865 4.53400 4.61408 4.73230 4.77851 4.84136 4.92461 4.94181 4.99090 5.04752 5.11748 5.18468 5.26374 5.33376 5.39910 5.41988 5.62715 5.68363 6.12255 6.29673 6.36533 7.03579 7.07568 7.68186 8.32262 9.20176 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028132 B = 0.003247 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.066896 B = 8621.639594 C = 9087.426790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.060 4.060 3 Si 0.984 3.016 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.251 4.251 8 H 0.082 0.918 9 N -0.620 5.620 10 C 0.199 3.801 11 C 0.077 3.923 12 H 0.083 0.917 13 O -0.389 6.389 14 C 0.039 3.961 15 C 0.068 3.932 16 N -0.597 5.597 17 C 0.515 3.485 18 O -0.584 6.584 19 C -0.131 4.131 20 H 0.144 0.856 21 C -0.132 4.132 22 C 0.049 3.951 23 H 0.144 0.856 24 C -0.139 4.139 25 C -0.141 4.141 26 C 0.074 3.926 27 H 0.108 0.892 28 O -0.407 6.407 29 C 0.113 3.887 30 H 0.082 0.918 31 C 0.141 3.859 32 H 0.250 0.750 33 H 0.029 0.971 34 H 0.022 0.978 35 H 0.137 0.863 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.031 0.969 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 -26.248 -8.556 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.811 3.189 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.379 4.379 8 H 0.100 0.900 9 N -0.347 5.347 10 C 0.073 3.927 11 C 0.018 3.982 12 H 0.101 0.899 13 O -0.308 6.308 14 C -0.038 4.038 15 C -0.053 4.053 16 N -0.329 5.329 17 C 0.306 3.694 18 O -0.463 6.463 19 C -0.152 4.152 20 H 0.162 0.838 21 C -0.170 4.170 22 C -0.007 4.007 23 H 0.161 0.839 24 C -0.177 4.177 25 C -0.179 4.179 26 C 0.016 3.984 27 H 0.126 0.874 28 O -0.327 6.327 29 C 0.007 3.993 30 H 0.100 0.900 31 C 0.014 3.986 32 H 0.060 0.940 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.049 0.951 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.472 -25.794 -7.825 26.959 hybrid contribution 0.386 1.467 0.674 1.660 sum 0.858 -24.327 -7.151 25.371 Atomic orbital electron populations 1.70154 1.06359 1.25694 1.57362 1.25713 0.96679 1.01124 1.01825 0.84995 0.77736 0.78731 0.77443 1.21044 1.21829 1.19338 1.19427 0.91649 0.83506 1.43357 0.90050 1.44366 1.02188 1.02049 1.86091 1.20833 0.84384 0.88938 0.98531 1.23503 0.95463 0.96455 0.82760 0.89903 1.87891 1.93834 1.26635 1.22457 1.23293 0.95640 0.81830 1.03029 1.22931 0.98685 1.04652 0.79080 1.47693 1.66981 1.07568 1.10652 1.21370 0.75093 0.87121 0.85841 1.90691 1.52513 1.84748 1.18333 1.23485 1.01730 0.89282 1.00746 0.83808 1.23718 0.93746 0.96876 1.02630 1.25022 0.98598 0.94230 0.82888 0.83887 1.23272 0.92950 0.98682 1.02757 1.23266 0.98582 0.95301 1.00752 1.24529 0.86825 0.93827 0.93206 0.87363 1.90142 1.29326 1.82576 1.30669 1.21847 0.96254 0.82705 0.98503 0.90019 1.21637 0.94506 0.84709 0.97743 0.94022 0.95263 0.96019 0.84561 0.91843 0.90260 0.84314 0.84964 0.91578 0.90520 0.87402 0.90632 0.88001 0.95053 0.94934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.25 10.34 21.65 0.22 -58.02 16 2 C -0.06 -3.51 5.48 84.86 0.46 -3.04 16 3 Si 0.98 46.85 29.56 68.60 2.03 48.88 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.25 -14.73 10.26 84.03 0.86 -13.87 16 8 H 0.08 4.60 7.84 -2.91 -0.02 4.57 16 9 N -0.62 -33.99 3.37 -694.40 -2.34 -36.33 16 10 C 0.20 10.44 5.01 87.12 0.44 10.87 16 11 C 0.08 3.12 4.00 31.61 0.13 3.25 16 12 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 13 O -0.39 -13.99 9.98 -148.98 -1.49 -15.48 16 14 C 0.04 0.84 7.02 72.17 0.51 1.35 16 15 C 0.07 1.33 5.96 86.47 0.52 1.85 16 16 N -0.60 -17.55 2.76 -793.32 -2.19 -19.74 16 17 C 0.52 15.35 6.92 87.66 0.61 15.96 16 18 O -0.58 -23.66 15.33 -3.03 -0.05 -23.71 16 19 C -0.13 -2.34 1.93 -9.24 -0.02 -2.36 16 20 H 0.14 1.57 7.53 -2.39 -0.02 1.55 16 21 C -0.13 -1.59 4.49 32.89 0.15 -1.44 16 22 C 0.05 0.69 5.71 32.55 0.19 0.87 16 23 H 0.14 1.52 8.14 -2.39 -0.02 1.50 16 24 C -0.14 -1.19 6.52 32.26 0.21 -0.98 16 25 C -0.14 -1.62 6.52 32.25 0.21 -1.41 16 26 C 0.07 1.53 4.54 32.54 0.15 1.68 16 27 H 0.11 2.72 7.80 -2.39 -0.02 2.70 16 28 O -0.41 -10.28 11.65 -148.98 -1.74 -12.01 16 29 C 0.11 4.47 3.19 45.95 0.15 4.62 16 30 H 0.08 3.69 7.08 -2.38 -0.02 3.67 16 31 C 0.14 6.37 6.80 86.57 0.59 6.96 16 32 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.03 1.73 7.19 -2.39 -0.02 1.71 16 34 H 0.02 1.26 7.55 -2.39 -0.02 1.25 16 35 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.65 7.60 -2.39 -0.02 1.63 16 38 H 0.14 1.40 4.62 -2.39 -0.01 1.39 16 39 H 0.13 0.42 7.43 -2.39 -0.02 0.40 16 40 H 0.07 1.03 7.73 -2.38 -0.02 1.01 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.11 0.31 7.80 -2.38 -0.02 0.29 16 43 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.10 0.69 7.79 -2.39 -0.02 0.67 16 45 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.03 1.43 7.34 -2.39 -0.02 1.41 16 Total: -1.00 -82.69 349.28 0.58 -82.12 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.98 Total: 9.99 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 5.14 Total: 24.30 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -4.30 Total: -114.09 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -3.27 Total: -51.20 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -82.69 0.58 -82.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083200792.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.049 kcal (2) G-P(sol) polarization free energy of solvation -82.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds