Wall clock time and date at job start Fri Apr 10 2020 14:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48497 * 109.47414 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47409 * 119.99958 * 3 2 1 7 7 C 1.38807 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00203 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.47154 * 126.52155 * 0.04280 * 9 7 2 11 11 C 1.53844 * 106.28217 * 210.82562 * 10 9 7 12 12 C 1.53682 * 105.55809 * 340.70240 * 11 10 9 13 13 C 1.52993 * 111.17346 * 122.04020 * 12 11 10 14 14 N 1.46499 * 109.47033 * 62.60125 * 13 12 11 15 15 C 1.34778 * 119.99912 * 179.97438 * 14 13 12 16 16 O 1.21732 * 120.00151 * 0.02562 * 15 14 13 17 17 C 1.46382 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.33974 * 119.22963 * 0.02562 * 17 15 14 19 19 O 1.35008 * 121.68922 * 180.36743 * 18 17 15 20 20 C 1.43259 * 116.75866 * 342.82109 * 19 18 17 21 21 C 1.53554 * 108.07651 * 45.49889 * 20 19 18 22 22 O 1.36213 * 119.23280 * 180.02562 * 17 15 14 23 23 C 1.53515 * 110.45285 * 245.92970 * 12 11 10 24 24 C 1.54190 * 106.58566 * 116.97899 * 23 12 11 25 25 C 1.54740 * 104.35171 * 335.43463 * 24 23 12 26 26 C 1.47260 * 126.51698 * 180.02562 * 9 7 2 27 27 H 1.09002 * 112.28322 * 26.95592 * 26 9 7 28 28 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.09402 * 330.02985 * 10 9 7 30 30 H 1.09006 * 110.09052 * 91.56284 * 10 9 7 31 31 H 1.08997 * 110.23243 * 221.68419 * 11 10 9 32 32 H 1.08996 * 110.23211 * 99.71943 * 11 10 9 33 33 H 1.09000 * 109.47413 * 302.60287 * 13 12 11 34 34 H 1.09005 * 109.47152 * 182.59694 * 13 12 11 35 35 H 0.97001 * 120.00286 * 0.02562 * 14 13 12 36 36 H 1.08000 * 119.15761 * 0.08375 * 18 17 15 37 37 H 1.08998 * 109.75810 * 285.84888 * 20 19 18 38 38 H 1.08997 * 109.72988 * 165.13427 * 20 19 18 39 39 H 1.09002 * 109.75331 * 182.19717 * 21 20 19 40 40 H 1.09005 * 109.79504 * 61.48651 * 21 20 19 41 41 H 1.08997 * 110.04081 * 237.08737 * 23 12 11 42 42 H 1.08994 * 110.04392 * 358.54143 * 23 12 11 43 43 H 1.09005 * 110.80312 * 216.49892 * 24 23 12 44 44 H 1.09006 * 110.10558 * 94.02413 * 24 23 12 45 45 H 1.09000 * 110.64756 * 278.62057 * 25 24 23 46 46 H 1.08994 * 110.65244 * 155.53669 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1365 -2.5551 -0.0009 11 6 -0.4212 -3.8639 0.7560 12 6 0.9019 -4.6456 0.7398 13 6 1.3762 -4.9586 2.1602 14 7 0.3932 -5.8176 2.8251 15 6 0.6020 -6.2246 4.0929 16 8 1.6072 -5.8779 4.6857 17 6 -0.3799 -7.0834 4.7570 18 6 -1.4804 -7.4560 4.0900 19 8 -2.4215 -8.2408 4.6567 20 6 -2.0369 -8.9620 5.8333 21 6 -1.2820 -7.9966 6.7584 22 8 -0.1534 -7.4849 6.0388 23 6 0.7571 -5.9281 -0.0914 24 6 1.7298 -5.7944 -1.2802 25 6 1.9128 -4.2680 -1.4563 26 6 1.9124 -3.7386 -0.0005 27 1 2.9016 -3.7594 0.4567 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6094 -1.7165 0.5102 30 1 -0.5050 -2.6255 -1.0243 31 1 -1.2004 -4.4315 0.2475 32 1 -0.7192 -3.6488 1.7821 33 1 1.4846 -4.0297 2.7201 34 1 2.3371 -5.4715 2.1177 35 1 -0.4075 -6.0942 2.3526 36 1 -1.6205 -7.1162 3.0745 37 1 -1.3872 -9.7935 5.5599 38 1 -2.9249 -9.3391 6.3404 39 1 -0.9420 -8.5282 7.6472 40 1 -1.9373 -7.1753 7.0488 41 1 1.0081 -6.7974 0.5164 42 1 -0.2621 -6.0165 -0.4674 43 1 1.3024 -6.2341 -2.1815 44 1 2.6820 -6.2678 -1.0404 45 1 1.0818 -3.8438 -2.0199 46 1 2.8619 -4.0484 -1.9450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094355486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:51 Heat of formation + Delta-G solvation = -61.430865 kcal Electronic energy + Delta-G solvation = -28310.778733 eV Core-core repulsion = 24395.313208 eV Total energy + Delta-G solvation = -3915.465525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.31968 -39.93245 -38.77795 -37.19671 -34.81341 -33.97357 -32.49687 -31.53858 -30.38600 -29.22421 -27.67668 -26.81534 -25.66030 -24.24527 -23.67265 -21.95862 -20.48909 -20.02394 -19.42005 -18.97661 -18.52615 -17.92702 -16.98619 -16.63278 -15.80024 -15.36316 -15.26160 -15.04978 -14.82144 -14.48494 -14.44125 -14.37481 -13.89728 -13.56168 -13.54219 -13.27462 -12.84310 -12.59502 -12.40039 -11.86999 -11.63918 -11.32880 -11.21339 -10.98632 -10.95430 -10.78529 -10.64470 -10.53130 -10.27900 -10.09940 -10.05539 -9.99588 -9.70214 -9.59979 -9.49312 -8.96216 -8.65304 -8.42050 -6.86880 -5.62557 -3.07721 1.14632 2.49231 2.84709 3.25214 3.41783 3.46275 3.47063 3.65099 3.96205 4.46913 4.48834 4.54920 4.59300 4.85804 4.93915 4.96981 5.01267 5.07912 5.14618 5.47763 5.52556 5.59505 5.63392 5.75033 5.90494 5.93982 6.06218 6.09844 6.12075 6.17529 6.31547 6.36542 6.44110 6.44367 6.49589 6.65233 6.68992 6.78702 6.88809 7.02969 7.08361 7.51040 7.54408 7.63533 7.86889 8.23101 8.42601 9.22565 9.83541 10.50049 11.37634 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003221 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.929259 B = 8690.192353 C = 9376.586377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.219 4.219 8 H 0.078 0.922 9 N -0.588 5.588 10 C 0.137 3.863 11 C -0.131 4.131 12 C -0.087 4.087 13 C 0.144 3.856 14 N -0.714 5.714 15 C 0.570 3.430 16 O -0.523 6.523 17 C -0.064 4.064 18 C 0.001 3.999 19 O -0.301 6.301 20 C 0.014 3.986 21 C 0.017 3.983 22 O -0.286 6.286 23 C -0.112 4.112 24 C -0.122 4.122 25 C -0.135 4.135 26 C 0.169 3.831 27 H 0.065 0.935 28 H 0.252 0.748 29 H 0.121 0.879 30 H 0.006 0.994 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.397 0.603 36 H 0.179 0.821 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 -19.223 6.838 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.308 5.308 10 C 0.011 3.989 11 C -0.170 4.170 12 C -0.089 4.089 13 C 0.022 3.978 14 N -0.368 5.368 15 C 0.356 3.644 16 O -0.400 6.400 17 C -0.113 4.113 18 C -0.066 4.066 19 O -0.213 6.213 20 C -0.061 4.061 21 C -0.059 4.059 22 O -0.199 6.199 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.176 4.176 26 C 0.059 3.941 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.138 0.862 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.232 0.768 36 H 0.196 0.804 37 H 0.099 0.901 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.088 0.912 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.111 -18.684 7.327 20.710 hybrid contribution -0.097 0.540 -0.193 0.582 sum -5.209 -18.144 7.135 20.180 Atomic orbital electron populations 1.69613 1.04892 1.24742 1.57738 1.24758 0.95673 0.97692 1.02491 0.86153 0.78411 0.83049 0.77900 1.21270 1.21634 1.21133 1.19059 0.90481 0.82364 1.42844 0.90453 1.44556 1.01768 0.99338 1.85158 1.21857 0.85243 0.95148 0.96605 1.22728 0.94318 0.99027 1.00963 1.22038 0.98475 0.95631 0.92803 1.21456 0.90396 0.93900 0.92087 1.45898 1.25687 1.52157 1.13028 1.17099 0.85440 0.80111 0.81719 1.90861 1.28278 1.56438 1.64451 1.20505 0.99057 1.04732 0.86966 1.23138 0.90204 0.95164 0.98052 1.86108 1.36852 1.56828 1.41518 1.23723 1.02286 0.94094 0.86034 1.23681 0.88983 0.98084 0.95128 1.86441 1.33773 1.78023 1.21672 1.22228 0.99839 0.96412 0.96548 1.22263 0.98691 0.97812 0.97271 1.23039 1.01371 0.93276 0.99875 1.21673 0.94579 0.85587 0.92213 0.91648 0.93683 0.86181 0.97612 0.92746 0.92536 0.90497 0.91532 0.76767 0.80417 0.90080 0.86104 0.86073 0.90353 0.92302 0.91915 0.92542 0.92427 0.91216 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.34 10.06 55.49 0.56 -25.78 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.22 -5.94 10.33 -15.06 -0.16 -6.09 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.59 -14.26 2.98 -161.95 -0.48 -14.74 16 10 C 0.14 3.17 5.68 -3.25 -0.02 3.15 16 11 C -0.13 -2.32 5.81 -25.94 -0.15 -2.47 16 12 C -0.09 -1.41 0.65 -153.02 -0.10 -1.51 16 13 C 0.14 2.30 4.27 -4.05 -0.02 2.29 16 14 N -0.71 -9.66 4.77 -61.71 -0.29 -9.95 16 15 C 0.57 8.93 7.73 -12.98 -0.10 8.83 16 16 O -0.52 -10.51 16.92 -10.05 -0.17 -10.68 16 17 C -0.06 -0.83 6.61 -37.81 -0.25 -1.08 16 18 C 0.00 0.01 10.57 29.23 0.31 0.32 16 19 O -0.30 -2.84 10.47 -30.84 -0.32 -3.17 16 20 C 0.01 0.09 7.29 37.44 0.27 0.37 16 21 C 0.02 0.14 7.31 37.44 0.27 0.41 16 22 O -0.29 -3.79 10.28 -45.75 -0.47 -4.26 16 23 C -0.11 -1.48 5.62 -25.84 -0.15 -1.62 16 24 C -0.12 -1.68 6.83 -25.19 -0.17 -1.85 16 25 C -0.14 -2.37 6.38 -24.81 -0.16 -2.53 16 26 C 0.17 3.30 3.59 -65.64 -0.24 3.06 16 27 H 0.07 1.29 7.95 -51.93 -0.41 0.88 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.12 3.21 5.45 -51.93 -0.28 2.93 16 30 H 0.01 0.14 7.71 -51.93 -0.40 -0.26 16 31 H 0.05 0.83 7.11 -51.93 -0.37 0.46 16 32 H 0.06 1.01 7.62 -51.93 -0.40 0.61 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.40 4.25 5.70 -40.82 -0.23 4.02 16 36 H 0.18 1.38 6.08 -52.49 -0.32 1.06 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.69 7.47 -51.93 -0.39 0.30 16 42 H 0.06 0.77 7.10 -51.93 -0.37 0.40 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.36 7.28 -51.93 -0.38 0.98 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -33.37 359.41 -8.43 -41.81 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.90 Total: 3.53 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.74 Total: 0.86 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.22 Total: -50.48 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.96 Total: -18.10 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.37 -8.43 -41.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094355486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.626 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds