Wall clock time and date at job start Fri Apr 10 2020 14:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99764 * 2 1 4 4 H 1.48497 * 109.47414 * 239.99839 * 3 2 1 5 5 H 1.48504 * 109.47268 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47409 * 119.99958 * 3 2 1 7 7 C 1.38807 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00203 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99743 * 359.97438 * 7 2 1 10 10 C 1.47154 * 126.52155 * 0.04280 * 9 7 2 11 11 C 1.53844 * 106.28217 * 210.82562 * 10 9 7 12 12 C 1.53682 * 105.55809 * 340.70240 * 11 10 9 13 13 C 1.52993 * 111.17346 * 122.04020 * 12 11 10 14 14 N 1.46499 * 109.47033 * 62.60125 * 13 12 11 15 15 C 1.34778 * 119.99912 * 179.97438 * 14 13 12 16 16 O 1.21732 * 120.00151 * 0.02562 * 15 14 13 17 17 C 1.46382 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.33974 * 119.22963 * 0.02562 * 17 15 14 19 19 O 1.35008 * 121.68922 * 180.36743 * 18 17 15 20 20 C 1.43259 * 116.75866 * 342.82109 * 19 18 17 21 21 C 1.53554 * 108.07651 * 45.49889 * 20 19 18 22 22 O 1.36213 * 119.23280 * 180.02562 * 17 15 14 23 23 C 1.53515 * 110.45285 * 245.92970 * 12 11 10 24 24 C 1.54190 * 106.58566 * 116.97899 * 23 12 11 25 25 C 1.54740 * 104.35171 * 335.43463 * 24 23 12 26 26 C 1.47260 * 126.51698 * 180.02562 * 9 7 2 27 27 H 1.09002 * 112.28322 * 26.95592 * 26 9 7 28 28 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 29 29 H 1.08999 * 110.09402 * 330.02985 * 10 9 7 30 30 H 1.09006 * 110.09052 * 91.56284 * 10 9 7 31 31 H 1.08997 * 110.23243 * 221.68419 * 11 10 9 32 32 H 1.08996 * 110.23211 * 99.71943 * 11 10 9 33 33 H 1.09000 * 109.47413 * 302.60287 * 13 12 11 34 34 H 1.09005 * 109.47152 * 182.59694 * 13 12 11 35 35 H 0.97001 * 120.00286 * 0.02562 * 14 13 12 36 36 H 1.08000 * 119.15761 * 0.08375 * 18 17 15 37 37 H 1.08998 * 109.75810 * 285.84888 * 20 19 18 38 38 H 1.08997 * 109.72988 * 165.13427 * 20 19 18 39 39 H 1.09002 * 109.75331 * 182.19717 * 21 20 19 40 40 H 1.09005 * 109.79504 * 61.48651 * 21 20 19 41 41 H 1.08997 * 110.04081 * 237.08737 * 23 12 11 42 42 H 1.08994 * 110.04392 * 358.54143 * 23 12 11 43 43 H 1.09005 * 110.80312 * 216.49892 * 24 23 12 44 44 H 1.09006 * 110.10558 * 94.02413 * 24 23 12 45 45 H 1.09000 * 110.64756 * 278.62057 * 25 24 23 46 46 H 1.08994 * 110.65244 * 155.53669 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1365 -2.5551 -0.0009 11 6 -0.4212 -3.8639 0.7560 12 6 0.9019 -4.6456 0.7398 13 6 1.3762 -4.9586 2.1602 14 7 0.3932 -5.8176 2.8251 15 6 0.6020 -6.2246 4.0929 16 8 1.6072 -5.8779 4.6857 17 6 -0.3799 -7.0834 4.7570 18 6 -1.4804 -7.4560 4.0900 19 8 -2.4215 -8.2408 4.6567 20 6 -2.0369 -8.9620 5.8333 21 6 -1.2820 -7.9966 6.7584 22 8 -0.1534 -7.4849 6.0388 23 6 0.7571 -5.9281 -0.0914 24 6 1.7298 -5.7944 -1.2802 25 6 1.9128 -4.2680 -1.4563 26 6 1.9124 -3.7386 -0.0005 27 1 2.9016 -3.7594 0.4567 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6094 -1.7165 0.5102 30 1 -0.5050 -2.6255 -1.0243 31 1 -1.2004 -4.4315 0.2475 32 1 -0.7192 -3.6488 1.7821 33 1 1.4846 -4.0297 2.7201 34 1 2.3371 -5.4715 2.1177 35 1 -0.4075 -6.0942 2.3526 36 1 -1.6205 -7.1162 3.0745 37 1 -1.3872 -9.7935 5.5599 38 1 -2.9249 -9.3391 6.3404 39 1 -0.9420 -8.5282 7.6472 40 1 -1.9373 -7.1753 7.0488 41 1 1.0081 -6.7974 0.5164 42 1 -0.2621 -6.0165 -0.4674 43 1 1.3024 -6.2341 -2.1815 44 1 2.6820 -6.2678 -1.0404 45 1 1.0818 -3.8438 -2.0199 46 1 2.8619 -4.0484 -1.9450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094355486.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:50 Heat of formation + Delta-G solvation = -83.868509 kcal Electronic energy + Delta-G solvation = -28311.751702 eV Core-core repulsion = 24395.313208 eV Total energy + Delta-G solvation = -3916.438494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.14893 -41.24168 -40.04631 -38.00357 -36.33431 -35.47584 -33.50226 -33.15400 -31.81945 -30.25060 -28.95841 -28.43178 -26.45000 -25.66943 -25.30864 -23.00444 -22.06643 -21.30740 -20.53879 -20.01257 -19.31538 -19.28945 -18.72738 -17.44940 -16.93956 -16.83693 -16.50189 -16.27425 -15.84940 -15.69376 -15.58221 -15.28222 -15.22046 -15.07121 -14.87331 -14.35150 -14.12254 -14.05430 -13.57853 -13.36710 -13.14421 -12.82381 -12.80397 -12.51147 -12.14244 -12.02744 -11.98239 -11.82272 -11.71004 -11.57987 -11.55922 -11.41393 -11.31881 -11.03511 -10.99133 -10.67573 -10.23048 -9.26234 -8.83989 -7.70973 -5.17235 0.23295 1.45936 1.48444 1.54269 1.55874 2.09445 2.22886 2.50668 2.73742 3.32722 3.40338 3.55367 3.68857 3.72620 3.77684 3.95120 3.99113 4.02419 4.27008 4.33286 4.39695 4.45646 4.50344 4.57959 4.64163 4.65552 4.67369 4.76871 4.85726 4.92587 4.98734 5.08524 5.14638 5.20552 5.27105 5.33917 5.46065 5.51323 5.52887 5.62430 5.72651 5.76485 5.91996 6.19652 6.43138 6.53922 7.11142 7.15896 7.84332 8.50262 9.26405 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016834 B = 0.003221 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.929259 B = 8690.192353 C = 9376.586377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.230 4.230 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.139 3.861 11 C -0.118 4.118 12 C -0.072 4.072 13 C 0.155 3.845 14 N -0.697 5.697 15 C 0.569 3.431 16 O -0.582 6.582 17 C -0.101 4.101 18 C 0.043 3.957 19 O -0.304 6.304 20 C 0.012 3.988 21 C 0.009 3.991 22 O -0.322 6.322 23 C -0.105 4.105 24 C -0.112 4.112 25 C -0.131 4.131 26 C 0.154 3.846 27 H 0.056 0.944 28 H 0.245 0.755 29 H 0.082 0.918 30 H -0.014 1.014 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.414 0.586 36 H 0.205 0.795 37 H 0.090 0.910 38 H 0.157 0.843 39 H 0.147 0.853 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.110 -22.523 6.637 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.259 4.259 3 Si 0.803 3.197 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.359 4.359 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.014 3.986 11 C -0.157 4.157 12 C -0.074 4.074 13 C 0.031 3.969 14 N -0.351 5.351 15 C 0.358 3.642 16 O -0.463 6.463 17 C -0.149 4.149 18 C -0.025 4.025 19 O -0.216 6.216 20 C -0.062 4.062 21 C -0.066 4.066 22 O -0.237 6.237 23 C -0.142 4.142 24 C -0.150 4.150 25 C -0.171 4.171 26 C 0.046 3.954 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.004 0.996 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.253 0.747 36 H 0.221 0.779 37 H 0.108 0.892 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.460 -22.047 7.105 24.048 hybrid contribution 0.263 1.514 -0.092 1.539 sum -6.197 -20.533 7.013 22.566 Atomic orbital electron populations 1.69889 1.05964 1.24668 1.59073 1.25509 0.96548 1.00601 1.03278 0.85215 0.77180 0.79367 0.77968 1.20577 1.21990 1.20796 1.19388 0.90833 0.83933 1.41734 0.90553 1.44782 1.02540 1.00414 1.85373 1.21631 0.84605 0.96775 0.95636 1.22593 0.96142 0.96756 1.00211 1.21871 0.96177 0.96480 0.92895 1.21145 0.91373 0.92722 0.91623 1.45617 1.25691 1.51166 1.12627 1.17575 0.85228 0.79674 0.81743 1.90823 1.30836 1.58821 1.65792 1.20123 0.99895 1.07119 0.87809 1.23502 0.88200 0.92484 0.98283 1.86118 1.36696 1.56357 1.42449 1.24052 1.03949 0.93421 0.84797 1.24020 0.88128 0.98545 0.95885 1.86368 1.36419 1.78872 1.22077 1.22227 1.01081 0.94988 0.95923 1.22226 0.99883 0.94318 0.98528 1.22875 1.00180 0.96469 0.97573 1.21989 0.94983 0.84205 0.94221 0.92586 0.94492 0.90004 0.99648 0.89138 0.92886 0.94479 0.91297 0.74735 0.77871 0.89186 0.82552 0.83561 0.90412 0.89726 0.89762 0.90304 0.91030 0.93523 0.93169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.40 10.06 21.65 0.22 -56.18 16 2 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 3 Si 0.97 46.60 29.55 68.60 2.03 48.63 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.23 -12.91 10.33 84.03 0.87 -12.04 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -30.60 2.98 -666.28 -1.99 -32.59 16 10 C 0.14 6.63 5.68 86.54 0.49 7.12 16 11 C -0.12 -4.04 5.81 31.11 0.18 -3.86 16 12 C -0.07 -2.22 0.65 -51.22 -0.03 -2.25 16 13 C 0.15 4.89 4.27 86.38 0.37 5.26 16 14 N -0.70 -17.71 4.77 -467.36 -2.23 -19.94 16 15 C 0.57 17.63 7.73 86.36 0.67 18.30 16 16 O -0.58 -24.17 16.92 10.10 0.17 -24.00 16 17 C -0.10 -2.50 6.61 23.42 0.15 -2.35 16 18 C 0.04 0.72 10.57 66.85 0.71 1.43 16 19 O -0.30 -4.57 10.47 -69.30 -0.73 -5.29 16 20 C 0.01 0.12 7.29 72.17 0.53 0.64 16 21 C 0.01 0.13 7.31 72.17 0.53 0.65 16 22 O -0.32 -8.34 10.28 -71.76 -0.74 -9.08 16 23 C -0.10 -2.30 5.62 31.17 0.18 -2.13 16 24 C -0.11 -2.66 6.83 31.59 0.22 -2.44 16 25 C -0.13 -4.48 6.38 31.84 0.20 -4.27 16 26 C 0.15 6.03 3.59 46.06 0.17 6.20 16 27 H 0.06 2.27 7.95 -2.39 -0.02 2.25 16 28 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.08 4.59 5.45 -2.39 -0.01 4.58 16 30 H -0.01 -0.73 7.71 -2.38 -0.02 -0.75 16 31 H 0.09 2.45 7.11 -2.39 -0.02 2.43 16 32 H 0.05 1.85 7.62 -2.39 -0.02 1.83 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.41 7.41 5.70 -92.71 -0.53 6.88 16 36 H 0.21 2.19 6.08 -2.91 -0.02 2.17 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.16 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.15 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 1.52 7.47 -2.39 -0.02 1.50 16 42 H 0.08 1.58 7.10 -2.39 -0.02 1.56 16 43 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.05 1.81 7.28 -2.39 -0.02 1.79 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -78.97 359.41 2.89 -76.09 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.47 Total: 15.49 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.68 Total: 6.89 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.00 Total: -108.71 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.29 Total: -38.38 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -78.97 2.89 -76.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094355486.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.782 kcal (2) G-P(sol) polarization free energy of solvation -78.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds