Wall clock time and date at job start Fri Apr 10 2020 14:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48494 * 109.47201 * 240.00193 * 3 2 1 5 5 H 1.48497 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46828 * 120.00326 * 3 2 1 7 7 C 1.37877 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00536 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99984 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47613 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00796 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99297 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00579 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.63970 * 60.41631 * 13 11 10 15 15 C 1.53029 * 109.63864 * 300.00167 * 13 11 10 16 16 C 1.50076 * 110.14331 * 190.66700 * 15 13 11 17 17 C 1.29438 * 124.07631 * 17.12960 * 16 15 13 18 18 C 1.50068 * 124.07540 * 359.78835 * 17 16 15 19 19 C 1.52865 * 110.23354 * 16.70026 * 18 17 16 20 20 H 1.08997 * 109.44976 * 70.55196 * 19 18 17 21 21 C 1.50700 * 109.87964 * 190.99770 * 19 18 17 22 22 O 1.21285 * 119.99952 * 90.94453 * 21 19 18 23 23 N 1.34774 * 119.99807 * 270.94742 * 21 19 18 24 24 C 1.47152 * 120.97827 * 184.87078 * 23 21 19 25 25 C 1.53708 * 108.16535 * 129.43208 * 24 23 21 26 26 O 1.42963 * 109.14859 * 52.53332 * 25 24 23 27 27 C 1.42971 * 114.16628 * 297.29328 * 26 25 24 28 28 C 1.47147 * 120.98504 * 5.14721 * 23 21 19 29 29 H 0.96994 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47081 * 59.99962 * 9 7 2 31 31 H 1.09003 * 109.47617 * 300.00436 * 9 7 2 32 32 H 0.97003 * 119.99395 * 0.02562 * 10 9 7 33 33 H 1.08996 * 109.36012 * 70.45766 * 15 13 11 34 34 H 1.08997 * 109.35484 * 310.86921 * 15 13 11 35 35 H 1.08001 * 117.95986 * 197.15007 * 16 15 13 36 36 H 1.07998 * 117.96302 * 179.51279 * 17 16 15 37 37 H 1.09008 * 109.35744 * 137.07855 * 18 17 16 38 38 H 1.09002 * 109.36172 * 256.66258 * 18 17 16 39 39 H 1.09006 * 109.68219 * 249.21061 * 24 23 21 40 40 H 1.09002 * 109.68603 * 9.76200 * 24 23 21 41 41 H 1.09002 * 109.65810 * 292.57114 * 25 24 23 42 42 H 1.09000 * 109.44693 * 172.37090 * 25 24 23 43 43 H 1.08998 * 109.51112 * 302.65788 * 27 26 25 44 44 H 1.08993 * 109.55425 * 182.52519 * 27 26 25 45 45 H 1.09003 * 109.68015 * 350.23991 * 28 23 21 46 46 H 1.09009 * 109.68211 * 110.75334 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0020 13 6 2.7330 -6.0289 -0.0005 14 1 3.3556 -5.9781 0.8928 15 6 3.6159 -5.9513 -1.2479 16 6 4.4128 -7.2144 -1.3965 17 6 4.1353 -8.3227 -0.7882 18 6 2.9806 -8.4984 0.1542 19 6 1.9742 -7.3618 -0.0252 20 1 1.4648 -7.4756 -0.9820 21 6 0.9642 -7.3904 1.0929 22 8 1.1634 -6.7549 2.1065 23 7 -0.1604 -8.1224 0.9665 24 6 -1.2097 -8.0829 1.9974 25 6 -2.5544 -7.8154 1.3024 26 8 -2.7351 -8.7653 0.2493 27 6 -1.7555 -8.6817 -0.7887 28 6 -0.3725 -8.9892 -0.2035 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8896 32 1 3.1566 -3.4354 -0.0002 33 1 4.2955 -5.1039 -1.1576 34 1 2.9870 -5.8153 -2.1277 35 1 5.2713 -7.1973 -2.0514 36 1 4.7718 -9.1752 -0.9736 37 1 2.4915 -9.4515 -0.0474 38 1 3.3477 -8.4929 1.1805 39 1 -1.2471 -9.0387 2.5200 40 1 -0.9969 -7.2838 2.7075 41 1 -2.5588 -6.8073 0.8880 42 1 -3.3632 -7.9160 2.0261 43 1 -1.7570 -7.6767 -1.2106 44 1 -1.9893 -9.4049 -1.5699 45 1 0.3951 -8.7906 -0.9515 46 1 -0.3264 -10.0349 0.1011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331213778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:41 Heat of formation + Delta-G solvation = -104.157021 kcal Electronic energy + Delta-G solvation = -28677.959189 eV Core-core repulsion = 24760.640919 eV Total energy + Delta-G solvation = -3917.318270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84726 -39.31077 -37.91193 -37.18797 -34.67206 -34.16141 -32.40348 -31.96227 -31.16384 -30.82276 -27.84689 -27.19008 -24.63950 -24.05721 -23.74841 -22.37157 -21.54193 -19.67922 -19.09522 -18.25291 -17.44258 -17.13490 -16.47532 -16.02338 -15.79460 -15.46371 -15.25925 -15.07743 -14.90173 -14.77193 -14.22010 -14.14307 -13.86341 -13.59177 -13.28538 -13.20925 -12.76304 -12.60197 -12.46727 -12.32346 -11.96260 -11.89511 -11.60198 -11.47613 -11.02703 -11.01328 -10.95867 -10.81961 -10.77523 -10.75617 -10.28998 -10.19955 -9.44208 -9.38517 -9.15446 -8.93996 -8.70495 -8.48526 -7.83300 -6.14439 -4.21173 2.12741 2.82398 2.99431 3.26471 3.31159 3.32711 3.44211 3.72405 4.03577 4.35462 4.39592 4.52556 4.65458 4.73143 4.83136 4.98946 5.06790 5.07824 5.09565 5.13233 5.21619 5.23020 5.30239 5.39701 5.42879 5.45123 5.52791 5.63966 5.71552 5.74875 5.77292 5.85436 5.88733 5.93755 6.17425 6.46031 6.47222 6.76711 6.99578 7.33652 7.45725 7.48193 7.55750 7.68900 7.99873 8.39595 8.66603 8.80426 9.14113 9.45387 10.95820 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.003913 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.532319 B = 7153.185925 C = 8778.764364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.709 5.709 11 C 0.510 3.490 12 O -0.552 6.552 13 C -0.092 4.092 14 H 0.103 0.897 15 C -0.085 4.085 16 C -0.145 4.145 17 C -0.159 4.159 18 C -0.079 4.079 19 C -0.086 4.086 20 H 0.096 0.904 21 C 0.548 3.452 22 O -0.533 6.533 23 N -0.616 5.616 24 C 0.083 3.917 25 C 0.047 3.953 26 O -0.383 6.383 27 C 0.045 3.955 28 C 0.074 3.926 29 H 0.266 0.734 30 H 0.025 0.975 31 H 0.025 0.975 32 H 0.389 0.611 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.089 -21.246 -2.751 21.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.357 5.357 11 C 0.294 3.706 12 O -0.432 6.432 13 C -0.114 4.114 14 H 0.121 0.879 15 C -0.122 4.122 16 C -0.163 4.163 17 C -0.177 4.177 18 C -0.117 4.117 19 C -0.108 4.108 20 H 0.115 0.885 21 C 0.337 3.663 22 O -0.408 6.408 23 N -0.352 5.352 24 C -0.039 4.039 25 C -0.031 4.031 26 O -0.301 6.301 27 C -0.032 4.032 28 C -0.049 4.049 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.222 0.778 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.080 0.920 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.018 -21.004 -2.196 21.333 hybrid contribution 1.109 1.236 -0.086 1.663 sum 4.126 -19.767 -2.283 20.322 Atomic orbital electron populations 1.69965 1.06118 1.27351 1.48933 1.24943 0.94896 0.99407 0.94714 0.86482 0.79428 0.82356 0.78688 1.20071 1.21078 1.20057 1.21194 0.93208 0.90504 1.53185 0.91988 1.19059 0.88280 0.81941 0.97547 1.46377 1.10984 1.06056 1.72269 1.20151 0.89128 0.84279 0.76999 1.90616 1.16787 1.84558 1.51208 1.21281 0.97025 0.92572 1.00563 0.87917 1.20482 0.97654 0.96903 0.97199 1.22078 0.99750 0.94413 1.00020 1.21935 0.98640 0.98128 0.98980 1.20370 0.94103 0.97151 1.00050 1.21130 0.94979 0.95856 0.98818 0.88546 1.20126 0.81382 0.77027 0.87778 1.90679 1.76529 1.42538 1.31061 1.47929 1.19120 1.45758 1.22353 1.22258 0.87160 1.03122 0.91403 1.23087 0.96813 0.93151 0.90012 1.87911 1.50973 1.57831 1.33403 1.22974 0.87476 1.02648 0.90152 1.22421 0.98894 0.94619 0.88967 0.92441 0.95717 0.95678 0.77827 0.89663 0.89970 0.87327 0.87403 0.90436 0.90089 0.91269 0.88148 0.91792 0.87888 0.91951 0.87938 0.88758 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.98 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.86 5.43 -5.19 -0.03 6.83 16 10 N -0.71 -15.43 5.45 -61.47 -0.34 -15.77 16 11 C 0.51 10.47 6.44 -10.99 -0.07 10.40 16 12 O -0.55 -13.22 14.23 -9.50 -0.14 -13.36 16 13 C -0.09 -1.40 1.80 -91.55 -0.16 -1.56 16 14 H 0.10 1.58 8.09 -51.93 -0.42 1.16 16 15 C -0.09 -1.01 5.27 -28.17 -0.15 -1.16 16 16 C -0.14 -1.38 9.80 -35.89 -0.35 -1.73 16 17 C -0.16 -1.43 9.81 -35.90 -0.35 -1.78 16 18 C -0.08 -0.80 5.41 -28.26 -0.15 -0.95 16 19 C -0.09 -1.16 1.10 -91.64 -0.10 -1.27 16 20 H 0.10 1.24 6.23 -51.93 -0.32 0.92 16 21 C 0.55 9.04 4.80 -10.99 -0.05 8.99 16 22 O -0.53 -10.98 15.02 -9.50 -0.14 -11.12 16 23 N -0.62 -8.63 3.01 -172.02 -0.52 -9.14 16 24 C 0.08 1.11 6.65 -3.32 -0.02 1.09 16 25 C 0.05 0.59 7.00 37.53 0.26 0.85 16 26 O -0.38 -4.82 10.74 -35.23 -0.38 -5.20 16 27 C 0.05 0.48 6.99 37.31 0.26 0.74 16 28 C 0.07 0.76 6.52 -3.54 -0.02 0.74 16 29 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.39 7.33 7.98 -40.82 -0.33 7.00 16 33 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.11 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.08 0.62 8.06 -51.92 -0.42 0.21 16 38 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.10 1.55 7.12 -51.93 -0.37 1.18 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.84 5.40 -51.93 -0.28 0.56 16 46 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 368.47 15.07 5.55 5.55 Total: -1.00 -35.58 368.47 -8.75 -44.33 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.15 Total: 6.78 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: -1.36 Total: 7.59 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.12 Total: -50.65 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.66 Total: -29.68 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.58 -8.75 -44.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331213778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.828 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds