Wall clock time and date at job start Fri Apr 10 2020 14:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99968 * 2 1 4 4 H 1.48494 * 109.47201 * 240.00193 * 3 2 1 5 5 H 1.48497 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46828 * 120.00326 * 3 2 1 7 7 C 1.37877 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00536 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99984 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47613 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00796 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99297 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00579 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.63970 * 60.41631 * 13 11 10 15 15 C 1.53029 * 109.63864 * 300.00167 * 13 11 10 16 16 C 1.50076 * 110.14331 * 190.66700 * 15 13 11 17 17 C 1.29438 * 124.07631 * 17.12960 * 16 15 13 18 18 C 1.50068 * 124.07540 * 359.78835 * 17 16 15 19 19 C 1.52865 * 110.23354 * 16.70026 * 18 17 16 20 20 H 1.08997 * 109.44976 * 70.55196 * 19 18 17 21 21 C 1.50700 * 109.87964 * 190.99770 * 19 18 17 22 22 O 1.21285 * 119.99952 * 90.94453 * 21 19 18 23 23 N 1.34774 * 119.99807 * 270.94742 * 21 19 18 24 24 C 1.47152 * 120.97827 * 184.87078 * 23 21 19 25 25 C 1.53708 * 108.16535 * 129.43208 * 24 23 21 26 26 O 1.42963 * 109.14859 * 52.53332 * 25 24 23 27 27 C 1.42971 * 114.16628 * 297.29328 * 26 25 24 28 28 C 1.47147 * 120.98504 * 5.14721 * 23 21 19 29 29 H 0.96994 * 120.00141 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47081 * 59.99962 * 9 7 2 31 31 H 1.09003 * 109.47617 * 300.00436 * 9 7 2 32 32 H 0.97003 * 119.99395 * 0.02562 * 10 9 7 33 33 H 1.08996 * 109.36012 * 70.45766 * 15 13 11 34 34 H 1.08997 * 109.35484 * 310.86921 * 15 13 11 35 35 H 1.08001 * 117.95986 * 197.15007 * 16 15 13 36 36 H 1.07998 * 117.96302 * 179.51279 * 17 16 15 37 37 H 1.09008 * 109.35744 * 137.07855 * 18 17 16 38 38 H 1.09002 * 109.36172 * 256.66258 * 18 17 16 39 39 H 1.09006 * 109.68219 * 249.21061 * 24 23 21 40 40 H 1.09002 * 109.68603 * 9.76200 * 24 23 21 41 41 H 1.09002 * 109.65810 * 292.57114 * 25 24 23 42 42 H 1.09000 * 109.44693 * 172.37090 * 25 24 23 43 43 H 1.08998 * 109.51112 * 302.65788 * 27 26 25 44 44 H 1.08993 * 109.55425 * 182.52519 * 27 26 25 45 45 H 1.09003 * 109.68015 * 350.23991 * 28 23 21 46 46 H 1.09009 * 109.68211 * 110.75334 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0020 13 6 2.7330 -6.0289 -0.0005 14 1 3.3556 -5.9781 0.8928 15 6 3.6159 -5.9513 -1.2479 16 6 4.4128 -7.2144 -1.3965 17 6 4.1353 -8.3227 -0.7882 18 6 2.9806 -8.4984 0.1542 19 6 1.9742 -7.3618 -0.0252 20 1 1.4648 -7.4756 -0.9820 21 6 0.9642 -7.3904 1.0929 22 8 1.1634 -6.7549 2.1065 23 7 -0.1604 -8.1224 0.9665 24 6 -1.2097 -8.0829 1.9974 25 6 -2.5544 -7.8154 1.3024 26 8 -2.7351 -8.7653 0.2493 27 6 -1.7555 -8.6817 -0.7887 28 6 -0.3725 -8.9892 -0.2035 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8896 32 1 3.1566 -3.4354 -0.0002 33 1 4.2955 -5.1039 -1.1576 34 1 2.9870 -5.8153 -2.1277 35 1 5.2713 -7.1973 -2.0514 36 1 4.7718 -9.1752 -0.9736 37 1 2.4915 -9.4515 -0.0474 38 1 3.3477 -8.4929 1.1805 39 1 -1.2471 -9.0387 2.5200 40 1 -0.9969 -7.2838 2.7075 41 1 -2.5588 -6.8073 0.8880 42 1 -3.3632 -7.9160 2.0261 43 1 -1.7570 -7.6767 -1.2106 44 1 -1.9893 -9.4049 -1.5699 45 1 0.3951 -8.7906 -0.9515 46 1 -0.3264 -10.0349 0.1011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331213778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:40 Heat of formation + Delta-G solvation = -129.993555 kcal Electronic energy + Delta-G solvation = -28679.079545 eV Core-core repulsion = 24760.640919 eV Total energy + Delta-G solvation = -3918.438626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.07584 -40.57824 -39.28059 -38.31751 -36.17604 -35.81398 -34.41925 -32.94864 -32.33013 -31.78208 -29.27200 -28.83824 -25.82544 -25.28947 -24.81963 -24.04609 -22.70133 -21.35533 -20.25346 -19.25088 -19.01515 -18.31869 -17.72862 -17.51192 -17.13050 -16.86928 -16.59526 -16.32917 -16.12489 -15.99620 -15.67252 -15.59131 -15.08040 -14.71303 -14.48512 -14.43148 -14.12024 -13.97835 -13.75445 -13.66713 -13.48928 -13.19681 -12.96651 -12.88150 -12.69445 -12.43187 -12.27085 -12.03975 -11.98677 -11.80021 -11.76165 -11.53414 -11.28807 -10.82024 -10.75209 -10.55523 -9.88550 -9.84732 -9.59170 -8.31994 -6.49393 1.40185 1.43227 1.45036 1.53175 1.59955 1.76256 1.95034 2.29287 2.53590 2.78253 3.02551 3.32318 3.47363 3.68195 3.70716 3.86073 3.99370 4.05776 4.10609 4.14939 4.18905 4.26390 4.27774 4.40274 4.48186 4.51548 4.58592 4.69216 4.74914 4.79071 4.83048 4.88878 4.91158 5.06598 5.08072 5.18282 5.20665 5.40865 5.45535 5.65616 5.77096 5.81382 6.00651 6.04998 6.32959 6.61089 6.86094 7.17161 7.20162 7.45444 8.80248 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012356 B = 0.003913 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.532319 B = 7153.185925 C = 8778.764364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.273 3.727 10 N -0.707 5.707 11 C 0.503 3.497 12 O -0.592 6.592 13 C -0.083 4.083 14 H 0.102 0.898 15 C -0.081 4.081 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.074 4.074 19 C -0.083 4.083 20 H 0.104 0.896 21 C 0.536 3.464 22 O -0.589 6.589 23 N -0.620 5.620 24 C 0.081 3.919 25 C 0.053 3.947 26 O -0.387 6.387 27 C 0.041 3.959 28 C 0.071 3.929 29 H 0.269 0.731 30 H -0.012 1.012 31 H -0.025 1.025 32 H 0.406 0.594 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.107 0.893 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.129 0.871 43 H 0.034 0.966 44 H 0.141 0.859 45 H 0.111 0.889 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -23.282 -4.090 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.150 3.850 10 N -0.356 5.356 11 C 0.290 3.710 12 O -0.473 6.473 13 C -0.104 4.104 14 H 0.120 0.880 15 C -0.118 4.118 16 C -0.169 4.169 17 C -0.167 4.167 18 C -0.112 4.112 19 C -0.105 4.105 20 H 0.122 0.878 21 C 0.326 3.674 22 O -0.469 6.469 23 N -0.353 5.353 24 C -0.042 4.042 25 C -0.024 4.024 26 O -0.305 6.305 27 C -0.037 4.037 28 C -0.051 4.051 29 H 0.078 0.922 30 H 0.006 0.994 31 H -0.007 1.007 32 H 0.241 0.759 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.047 0.953 42 H 0.146 0.854 43 H 0.052 0.948 44 H 0.159 0.841 45 H 0.129 0.871 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.714 -23.104 -3.571 24.066 hybrid contribution 0.144 1.799 0.345 1.838 sum 5.858 -21.305 -3.226 22.330 Atomic orbital electron populations 1.70140 1.08371 1.28658 1.49868 1.26098 0.95779 1.03996 0.93683 0.85185 0.77924 0.76400 0.79583 1.18241 1.20949 1.18853 1.21580 0.94269 0.90553 1.53138 0.89849 1.18453 0.88584 0.84460 0.93515 1.46141 1.10970 1.05579 1.72917 1.21245 0.89730 0.84971 0.75047 1.90592 1.19103 1.85209 1.52418 1.21262 0.96038 0.90741 1.02398 0.88028 1.20479 0.97332 0.99239 0.94786 1.22085 1.00356 0.93069 1.01395 1.22111 0.98000 0.98922 0.97683 1.20425 0.93826 0.96660 1.00247 1.21214 0.95169 0.96312 0.97789 0.87809 1.20768 0.82409 0.76405 0.87799 1.90642 1.77989 1.44948 1.33296 1.48132 1.18325 1.45490 1.23391 1.22299 0.87339 1.03343 0.91246 1.23018 0.97424 0.91484 0.90485 1.87905 1.51763 1.57290 1.33545 1.23182 0.87681 1.02312 0.90484 1.22736 0.98922 0.95416 0.87993 0.92232 0.99367 1.00661 0.75910 0.88917 0.90654 0.84755 0.84226 0.87505 0.90797 0.88510 0.91262 0.95332 0.85351 0.94758 0.84149 0.87146 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.99 43.33 29.54 68.60 2.03 45.36 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 7 C -0.56 -31.54 9.28 25.60 0.24 -31.30 16 8 H 0.08 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.27 15.81 5.43 85.63 0.46 16.28 16 10 N -0.71 -32.27 5.45 -466.79 -2.55 -34.82 16 11 C 0.50 21.74 6.44 87.66 0.56 22.30 16 12 O -0.59 -30.45 14.23 11.34 0.16 -30.29 16 13 C -0.08 -2.51 1.80 -11.40 -0.02 -2.53 16 14 H 0.10 3.13 8.09 -2.39 -0.02 3.11 16 15 C -0.08 -1.80 5.27 29.66 0.16 -1.65 16 16 C -0.15 -2.34 9.80 27.04 0.27 -2.08 16 17 C -0.15 -2.05 9.81 27.04 0.27 -1.78 16 18 C -0.07 -1.28 5.41 29.61 0.16 -1.12 16 19 C -0.08 -2.19 1.10 -11.45 -0.01 -2.20 16 20 H 0.10 2.55 6.23 -2.39 -0.01 2.53 16 21 C 0.54 18.16 4.80 87.66 0.42 18.58 16 22 O -0.59 -25.78 15.02 11.35 0.17 -25.61 16 23 N -0.62 -17.45 3.01 -816.54 -2.46 -19.91 16 24 C 0.08 2.22 6.65 86.49 0.57 2.80 16 25 C 0.05 1.39 7.00 72.22 0.51 1.90 16 26 O -0.39 -9.46 10.74 -148.98 -1.60 -11.06 16 27 C 0.04 0.82 6.99 72.08 0.50 1.33 16 28 C 0.07 1.32 6.52 86.35 0.56 1.88 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H -0.02 -1.64 8.14 -2.39 -0.02 -1.66 16 32 H 0.41 15.56 7.98 -92.71 -0.74 14.82 16 33 H 0.09 1.90 7.88 -2.39 -0.02 1.88 16 34 H 0.08 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.11 1.25 8.06 -2.38 -0.02 1.23 16 38 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 39 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.07 2.34 7.12 -2.39 -0.02 2.33 16 41 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.11 1.68 5.40 -2.39 -0.01 1.66 16 46 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -84.54 368.47 1.39 -83.15 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.24 Total: 27.67 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 5.11 Total: 23.10 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -4.72 Total: -112.32 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -1.27 Total: -66.95 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -84.54 1.39 -83.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331213778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.849 kcal (2) G-P(sol) polarization free energy of solvation -84.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds