Wall clock time and date at job start Fri Apr 10 2020 14:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99965 * 2 1 4 4 H 1.48494 * 109.46927 * 240.00129 * 3 2 1 5 5 H 1.48500 * 109.47158 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46931 * 119.99859 * 3 2 1 7 7 C 1.37871 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00521 * 179.97438 * 7 2 1 9 9 C 1.50710 * 119.99964 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.34781 * 119.99697 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00085 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99918 * 179.97438 * 11 10 9 14 14 H 1.09009 * 109.81117 * 300.52678 * 13 11 10 15 15 C 1.53018 * 109.64250 * 61.05458 * 13 11 10 16 16 C 1.50075 * 110.14936 * 169.12097 * 15 13 11 17 17 C 1.29442 * 124.06939 * 342.86854 * 16 15 13 18 18 C 1.50061 * 124.07974 * 0.47430 * 17 16 15 19 19 C 1.53019 * 110.14686 * 342.86179 * 18 17 16 20 20 H 1.08999 * 109.82107 * 289.65056 * 19 18 17 21 21 C 1.50706 * 109.64351 * 169.12235 * 19 18 17 22 22 O 1.21280 * 120.00003 * 266.00790 * 21 19 18 23 23 N 1.34774 * 119.99468 * 86.28695 * 21 19 18 24 24 C 1.47153 * 120.98781 * 4.33002 * 23 21 19 25 25 C 1.53707 * 108.16005 * 129.43048 * 24 23 21 26 26 O 1.42968 * 109.14805 * 52.54341 * 25 24 23 27 27 C 1.42954 * 114.16292 * 297.28257 * 26 25 24 28 28 C 1.47158 * 120.97549 * 184.61124 * 23 21 19 29 29 H 0.97003 * 120.00492 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47008 * 60.00037 * 9 7 2 31 31 H 1.08995 * 109.46707 * 299.99938 * 9 7 2 32 32 H 0.97001 * 120.00122 * 359.97438 * 10 9 7 33 33 H 1.08998 * 109.36143 * 289.32557 * 15 13 11 34 34 H 1.08999 * 109.36207 * 48.91534 * 15 13 11 35 35 H 1.08002 * 117.96261 * 162.84597 * 16 15 13 36 36 H 1.08007 * 117.95849 * 180.44663 * 17 16 15 37 37 H 1.09003 * 109.35781 * 222.66179 * 18 17 16 38 38 H 1.08999 * 109.36209 * 103.07711 * 18 17 16 39 39 H 1.08998 * 109.67659 * 249.21359 * 24 23 21 40 40 H 1.08998 * 109.67738 * 9.76331 * 24 23 21 41 41 H 1.08993 * 109.66081 * 292.57220 * 25 24 23 42 42 H 1.09003 * 109.48421 * 172.39710 * 25 24 23 43 43 H 1.09003 * 109.51752 * 302.65446 * 27 26 25 44 44 H 1.08999 * 109.55487 * 182.52813 * 27 26 25 45 45 H 1.08998 * 109.68605 * 350.23757 * 28 23 21 46 46 H 1.09003 * 109.68223 * 110.79108 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 0.0000 12 8 0.5614 -5.1050 0.0000 13 6 2.7330 -6.0288 -0.0006 14 1 3.3684 -5.9712 -0.8845 15 6 3.5984 -5.9663 1.2599 16 6 4.3894 -7.2332 1.4072 17 6 4.1172 -8.3346 0.7841 18 6 2.9789 -8.4959 -0.1804 19 6 1.9701 -7.3595 0.0002 20 1 1.4438 -7.4796 0.9470 21 6 0.9796 -7.3762 -1.1356 22 8 1.1682 -6.6860 -2.1148 23 7 -0.1185 -8.1539 -1.0605 24 6 -0.4208 -8.9225 0.1574 25 6 -1.8766 -8.6337 0.5572 26 8 -2.7271 -8.8678 -0.5680 27 6 -2.4701 -8.0120 -1.6838 28 6 -1.0475 -8.2643 -2.1964 29 1 -0.4851 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8902 31 1 0.6247 -2.5571 0.8897 32 1 3.1567 -3.4354 -0.0009 33 1 4.2817 -5.1202 1.1875 34 1 2.9576 -5.8371 2.1321 35 1 5.2387 -7.2252 2.0743 36 1 4.7489 -9.1908 0.9696 37 1 2.4843 -9.4502 0.0007 38 1 3.3640 -8.4787 -1.2000 39 1 -0.2954 -9.9871 -0.0398 40 1 0.2494 -8.6160 0.9606 41 1 -1.9706 -7.5954 0.8749 42 1 -2.1664 -9.2926 1.3758 43 1 -2.5663 -6.9712 -1.3743 44 1 -3.1860 -8.2232 -2.4781 45 1 -0.7927 -7.5219 -2.9527 46 1 -0.9843 -9.2638 -2.6266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331213781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:50 Heat of formation + Delta-G solvation = -129.434846 kcal Electronic energy + Delta-G solvation = -28643.909477 eV Core-core repulsion = 24725.495078 eV Total energy + Delta-G solvation = -3918.414399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07358 -40.57926 -39.27238 -38.31193 -36.17212 -35.81548 -34.41514 -32.94547 -32.31467 -31.79141 -29.26921 -28.83313 -25.82716 -25.31098 -24.78382 -24.04371 -22.72396 -21.34973 -20.23216 -19.25777 -19.01329 -18.31565 -17.72875 -17.49722 -17.13001 -16.88344 -16.57930 -16.34744 -16.13373 -15.97784 -15.65436 -15.62237 -15.06045 -14.69462 -14.49503 -14.41290 -14.11447 -13.98533 -13.75091 -13.67397 -13.51475 -13.19910 -12.96587 -12.88403 -12.69302 -12.43563 -12.26977 -12.04238 -11.98712 -11.78639 -11.73819 -11.53238 -11.27794 -10.81996 -10.74921 -10.55579 -9.88469 -9.84205 -9.59329 -8.31929 -6.49405 1.40096 1.43375 1.45035 1.53155 1.60158 1.77868 1.94352 2.29543 2.54391 2.77840 3.02574 3.33089 3.46455 3.69217 3.70735 3.85273 4.00547 4.05726 4.09421 4.14901 4.19310 4.26123 4.28059 4.40459 4.48356 4.53551 4.58681 4.69174 4.75205 4.79378 4.83070 4.88458 4.91289 5.06742 5.08395 5.18471 5.20995 5.42204 5.45796 5.66079 5.77129 5.81504 6.00201 6.05088 6.32162 6.61151 6.86888 7.17395 7.20291 7.46461 8.80321 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012373 B = 0.003877 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.534073 B = 7221.200562 C = 8849.596458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.258 1.258 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.273 3.727 10 N -0.707 5.707 11 C 0.504 3.496 12 O -0.592 6.592 13 C -0.083 4.083 14 H 0.102 0.898 15 C -0.081 4.081 16 C -0.151 4.151 17 C -0.150 4.150 18 C -0.073 4.073 19 C -0.084 4.084 20 H 0.105 0.895 21 C 0.534 3.466 22 O -0.587 6.587 23 N -0.620 5.620 24 C 0.073 3.927 25 C 0.041 3.959 26 O -0.386 6.386 27 C 0.052 3.948 28 C 0.079 3.921 29 H 0.269 0.731 30 H -0.025 1.025 31 H -0.012 1.012 32 H 0.405 0.595 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.032 0.968 42 H 0.140 0.860 43 H 0.027 0.973 44 H 0.131 0.869 45 H 0.072 0.928 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.783 -23.563 3.616 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.150 3.850 10 N -0.357 5.357 11 C 0.291 3.709 12 O -0.474 6.474 13 C -0.105 4.105 14 H 0.120 0.880 15 C -0.118 4.118 16 C -0.169 4.169 17 C -0.167 4.167 18 C -0.110 4.110 19 C -0.105 4.105 20 H 0.123 0.877 21 C 0.325 3.675 22 O -0.467 6.467 23 N -0.354 5.354 24 C -0.049 4.049 25 C -0.036 4.036 26 O -0.305 6.305 27 C -0.026 4.026 28 C -0.044 4.044 29 H 0.078 0.922 30 H -0.007 1.007 31 H 0.006 0.994 32 H 0.241 0.759 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.050 0.950 42 H 0.158 0.842 43 H 0.045 0.955 44 H 0.148 0.852 45 H 0.091 0.909 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.737 -23.363 3.108 24.257 hybrid contribution 0.124 1.814 -0.332 1.849 sum 5.861 -21.549 2.776 22.503 Atomic orbital electron populations 1.70143 1.08382 1.28655 1.49881 1.26101 0.95780 1.04008 0.93680 0.85183 0.77922 0.76382 0.79589 1.18841 1.20941 1.18234 1.21584 0.94268 0.90554 1.53129 0.89846 1.18449 0.88592 0.84490 0.93482 1.46141 1.10942 1.05599 1.72975 1.21231 0.89712 0.84943 0.74968 1.90588 1.19155 1.85232 1.52434 1.21266 0.96084 0.90797 1.02304 0.88020 1.20475 0.97531 0.99213 0.94622 1.22086 1.00342 0.93065 1.01398 1.22114 0.98104 0.98971 0.97550 1.20421 0.93852 0.96670 1.00051 1.21274 0.95309 0.96311 0.97651 0.87689 1.20790 0.82063 0.76851 0.87810 1.90648 1.77263 1.42380 1.36433 1.48144 1.23744 1.46988 1.16545 1.22801 0.97527 0.97583 0.87011 1.23240 0.89508 1.01439 0.89423 1.87904 1.58656 1.59441 1.24461 1.22960 0.96304 0.93198 0.90090 1.22256 0.89280 1.03388 0.89499 0.92235 1.00712 0.99384 0.75927 0.88931 0.90678 0.84766 0.84259 0.87617 0.90754 0.87362 0.87525 0.94985 0.84234 0.95494 0.85165 0.90909 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.05 13.29 21.44 0.28 -57.77 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.99 43.43 29.54 68.60 2.03 45.46 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.56 -31.64 9.28 25.60 0.24 -31.41 16 8 H 0.08 4.27 7.60 -2.91 -0.02 4.25 16 9 C 0.27 15.89 5.43 85.64 0.46 16.35 16 10 N -0.71 -32.47 5.47 -466.78 -2.55 -35.02 16 11 C 0.50 21.89 6.34 87.65 0.56 22.45 16 12 O -0.59 -30.67 14.21 12.91 0.18 -30.49 16 13 C -0.08 -2.51 1.79 -11.40 -0.02 -2.53 16 14 H 0.10 3.13 8.09 -2.38 -0.02 3.11 16 15 C -0.08 -1.81 5.29 29.66 0.16 -1.65 16 16 C -0.15 -2.35 9.80 27.04 0.27 -2.09 16 17 C -0.15 -2.06 9.80 27.04 0.27 -1.79 16 18 C -0.07 -1.25 5.42 29.65 0.16 -1.09 16 19 C -0.08 -2.21 1.24 -11.40 -0.01 -2.22 16 20 H 0.11 2.58 6.01 -2.39 -0.01 2.57 16 21 C 0.53 18.07 4.93 87.66 0.43 18.50 16 22 O -0.59 -25.78 14.78 12.91 0.19 -25.59 16 23 N -0.62 -17.26 3.01 -816.53 -2.46 -19.72 16 24 C 0.07 1.37 6.54 86.49 0.57 1.94 16 25 C 0.04 0.86 7.00 72.22 0.51 1.36 16 26 O -0.39 -9.37 10.74 -148.98 -1.60 -10.97 16 27 C 0.05 1.32 6.98 72.08 0.50 1.82 16 28 C 0.08 2.07 6.65 86.35 0.57 2.65 16 29 H 0.27 15.62 8.31 -92.71 -0.77 14.84 16 30 H -0.03 -1.68 8.14 -2.39 -0.02 -1.70 16 31 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 32 H 0.41 15.65 8.07 -92.71 -0.75 14.90 16 33 H 0.09 1.91 7.95 -2.39 -0.02 1.89 16 34 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 36 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.43 8.10 -2.39 -0.02 1.41 16 39 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.11 1.75 5.46 -2.39 -0.01 1.74 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.13 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.07 2.34 7.06 -2.39 -0.02 2.32 16 46 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -84.93 368.46 1.43 -83.50 By element: Atomic # 1 Polarization: 27.40 SS G_CDS: 0.24 Total: 27.63 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 5.12 Total: 22.96 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -4.73 Total: -112.51 kcal Atomic # 8 Polarization: -65.82 SS G_CDS: -1.23 Total: -67.05 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -84.93 1.43 -83.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331213781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.932 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds