Wall clock time and date at job start Fri Apr 10 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86796 * 120.00414 * 2 1 4 4 H 1.48498 * 109.47408 * 95.75538 * 3 2 1 5 5 H 1.48499 * 109.47203 * 215.75893 * 3 2 1 6 6 H 1.48509 * 109.47035 * 335.75379 * 3 2 1 7 7 C 1.40050 * 119.99705 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00233 * 7.20047 * 7 2 1 9 9 C 1.46373 * 119.99822 * 187.19910 * 7 2 1 10 10 O 1.21687 * 120.00295 * 13.42979 * 9 7 2 11 11 N 1.34784 * 120.00255 * 193.42920 * 9 7 2 12 12 C 1.46965 * 120.58956 * 354.77799 * 11 9 7 13 13 C 1.53804 * 108.40072 * 124.75606 * 12 11 9 14 14 N 1.46965 * 108.58037 * 49.63222 * 13 12 11 15 15 C 1.34776 * 120.59166 * 124.62457 * 14 13 12 16 16 O 1.21615 * 120.00452 * 4.61712 * 15 14 13 17 17 C 1.47107 * 119.99891 * 184.61410 * 15 14 13 18 18 C 1.32994 * 120.00173 * 184.08579 * 17 15 14 19 19 C 1.50697 * 120.00048 * 180.02562 * 18 17 15 20 20 C 1.53177 * 109.54103 * 239.82186 * 19 18 17 21 21 C 1.53104 * 109.15714 * 183.24267 * 20 19 18 22 22 O 1.42902 * 109.49038 * 57.47416 * 21 20 19 23 23 C 1.42904 * 114.09346 * 298.89002 * 22 21 20 24 24 C 1.53098 * 109.41410 * 61.15996 * 23 22 21 25 25 C 1.46962 * 118.81364 * 304.65319 * 14 13 12 26 26 C 1.46964 * 120.59613 * 175.05462 * 11 9 7 27 27 H 0.97006 * 119.99919 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.60447 * 244.54095 * 12 11 9 29 29 H 1.09002 * 109.61130 * 5.04840 * 12 11 9 30 30 H 1.09002 * 109.74423 * 289.84793 * 13 12 11 31 31 H 1.08996 * 109.53522 * 169.30023 * 13 12 11 32 32 H 1.07998 * 119.99865 * 4.09003 * 17 15 14 33 33 H 1.08005 * 119.99591 * 359.97438 * 18 17 15 34 34 H 1.08998 * 109.54667 * 359.97438 * 19 18 17 35 35 H 1.09001 * 109.52367 * 303.05670 * 20 19 18 36 36 H 1.09004 * 109.52466 * 63.24498 * 20 19 18 37 37 H 1.08998 * 109.40458 * 297.49188 * 21 20 19 38 38 H 1.09005 * 109.49299 * 177.51449 * 21 20 19 39 39 H 1.08999 * 109.48301 * 301.17377 * 23 22 21 40 40 H 1.09002 * 109.47558 * 181.13482 * 23 22 21 41 41 H 1.09005 * 109.51661 * 182.48262 * 24 23 22 42 42 H 1.08996 * 109.57777 * 62.32835 * 24 23 22 43 43 H 1.08996 * 109.60759 * 295.47574 * 25 14 13 44 44 H 1.09000 * 109.61401 * 174.96938 * 25 14 13 45 45 H 1.08997 * 109.61063 * 354.94350 * 26 11 9 46 46 H 1.08994 * 109.61004 * 115.46079 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.6099 1.9761 1.3930 5 1 3.4722 1.4782 -0.8182 6 1 1.3827 2.6847 -0.5750 7 6 2.0068 -1.2129 -0.0005 8 1 1.4732 -2.1445 -0.1182 9 6 3.4619 -1.2180 0.1583 10 8 4.0368 -0.2126 0.5318 11 7 4.1652 -2.3363 -0.1091 12 6 3.4767 -3.5891 -0.4503 13 6 4.0167 -4.0874 -1.8015 14 7 5.4854 -4.0773 -1.7513 15 6 6.1885 -5.1958 -2.0179 16 8 5.6135 -6.2027 -2.3846 17 6 7.6516 -5.1987 -1.8653 18 6 8.3536 -6.2758 -2.2056 19 6 9.8524 -6.2789 -2.0488 20 6 10.5098 -6.5119 -3.4126 21 6 12.0278 -6.5943 -3.2311 22 8 12.3416 -7.6395 -2.3085 23 6 11.7929 -7.4493 -1.0028 24 6 10.2654 -7.4036 -1.0945 25 6 6.1737 -2.8259 -1.4046 26 6 5.6339 -2.3262 -0.0588 27 1 -0.4850 0.8401 -0.0004 28 1 3.6698 -4.3344 0.3213 29 1 2.4046 -3.4081 -0.5274 30 1 3.6735 -3.4298 -2.6003 31 1 3.6638 -5.1025 -1.9830 32 1 8.1558 -4.3261 -1.4769 33 1 7.8494 -7.1485 -2.5936 34 1 10.1789 -5.3202 -1.6461 35 1 10.1439 -7.4462 -3.8385 36 1 10.2657 -5.6858 -4.0805 37 1 12.3984 -5.6449 -2.8446 38 1 12.4981 -6.8040 -4.1918 39 1 12.1604 -6.5111 -0.5872 40 1 12.0938 -8.2753 -0.3583 41 1 9.8468 -7.2146 -0.1059 42 1 9.8934 -8.3563 -1.4714 43 1 5.9841 -2.0786 -2.1751 44 1 7.2454 -3.0080 -1.3241 45 1 5.9868 -1.3111 0.1226 46 1 5.9771 -2.9837 0.7398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493423267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:10 Heat of formation + Delta-G solvation = -126.336729 kcal Electronic energy + Delta-G solvation = -27149.489705 eV Core-core repulsion = 23231.209651 eV Total energy + Delta-G solvation = -3918.280054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38628 -40.37267 -39.94186 -37.81776 -36.35120 -35.02402 -34.87710 -32.91345 -32.06869 -32.00822 -29.50474 -28.05953 -26.54898 -24.80372 -24.44912 -23.96514 -22.40871 -21.26110 -20.88715 -19.61816 -18.89217 -18.37724 -17.74984 -17.08317 -16.98844 -16.91324 -16.66802 -16.38405 -16.13147 -15.72206 -15.64597 -15.35267 -15.09371 -14.83964 -14.58113 -14.47800 -14.10774 -14.00092 -13.72661 -13.36851 -13.29811 -13.29560 -12.99182 -12.67993 -12.47692 -12.29752 -12.28987 -12.26636 -12.02277 -11.92329 -11.54444 -11.28720 -11.23054 -10.90952 -10.46456 -10.44912 -10.09054 -10.01184 -9.17452 -8.79586 -7.02715 0.33273 1.32788 1.38514 1.60969 1.86445 2.06451 2.23893 2.33476 2.65456 3.00729 3.28718 3.36862 3.75204 3.81091 3.88509 3.88947 4.00785 4.03615 4.09053 4.18811 4.29355 4.34485 4.38971 4.41613 4.53283 4.59177 4.66493 4.69209 4.74756 4.79156 4.83585 4.84218 4.91094 4.99713 5.06032 5.11101 5.14820 5.23466 5.26999 5.48890 5.50898 5.65297 5.92185 6.18530 6.30367 6.37400 6.59790 7.05835 7.08824 7.93491 8.25405 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.002352 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.759425 B =11901.626612 C =12387.554173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.068 3.932 3 Si 1.014 2.986 4 H -0.292 1.292 5 H -0.281 1.281 6 H -0.303 1.303 7 C -0.553 4.553 8 H 0.085 0.915 9 C 0.553 3.447 10 O -0.640 6.640 11 N -0.634 5.634 12 C 0.111 3.889 13 C 0.105 3.895 14 N -0.604 5.604 15 C 0.542 3.458 16 O -0.592 6.592 17 C -0.220 4.220 18 C -0.042 4.042 19 C -0.064 4.064 20 C -0.147 4.147 21 C 0.058 3.942 22 O -0.407 6.407 23 C 0.059 3.941 24 C -0.147 4.147 25 C 0.101 3.899 26 C 0.100 3.900 27 H 0.292 0.708 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.159 0.841 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.134 0.866 45 H 0.087 0.913 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.349 -12.600 -5.300 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.148 4.148 3 Si 0.847 3.153 4 H -0.220 1.220 5 H -0.207 1.207 6 H -0.233 1.233 7 C -0.588 4.588 8 H 0.103 0.897 9 C 0.361 3.639 10 O -0.534 6.534 11 N -0.366 5.366 12 C -0.013 4.013 13 C -0.019 4.019 14 N -0.335 5.335 15 C 0.335 3.665 16 O -0.474 6.474 17 C -0.240 4.240 18 C -0.063 4.063 19 C -0.082 4.082 20 C -0.185 4.185 21 C -0.018 4.018 22 O -0.326 6.326 23 C -0.018 4.018 24 C -0.185 4.185 25 C -0.022 4.022 26 C -0.024 4.024 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.176 0.824 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.152 0.848 45 H 0.105 0.895 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 23.228 -12.743 -5.353 27.029 hybrid contribution -0.785 0.849 0.189 1.172 sum 22.443 -11.894 -5.164 25.919 Atomic orbital electron populations 1.69559 1.08394 1.31131 1.38895 1.26291 0.95319 1.03928 0.89264 0.84547 0.76347 0.75936 0.78510 1.21960 1.20735 1.23270 1.21022 0.90043 0.95621 1.52160 0.89701 1.18209 0.88257 0.81254 0.76208 1.90169 1.72446 1.34461 1.56360 1.47611 1.06005 1.10135 1.72893 1.22028 0.98734 0.85140 0.95430 1.21986 0.79816 1.02706 0.97394 1.48040 1.06836 1.10713 1.67957 1.19191 0.89423 0.81805 0.76125 1.90741 1.72932 1.34227 1.49544 1.22725 0.90932 1.02065 1.08277 1.23731 0.95876 0.96421 0.90223 1.20507 0.89957 1.00947 0.96823 1.22206 0.96374 1.03382 0.96498 1.22707 0.94080 0.91060 0.93970 1.87922 1.74889 1.47569 1.22241 1.22703 0.91854 1.02950 0.84270 1.22202 0.97255 0.98664 1.00393 1.22351 0.98918 0.84780 0.96171 1.21874 0.80552 1.02655 0.97310 0.89800 0.91749 0.88728 0.91396 0.88447 0.82401 0.87322 0.88251 0.91580 0.89509 0.91781 0.87855 0.91763 0.87909 0.89691 0.91567 0.91242 0.84798 0.89493 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.35 13.92 21.84 0.30 -47.05 16 2 C 0.07 3.78 5.52 85.31 0.47 4.26 16 3 Si 1.01 51.41 25.88 68.60 1.78 53.19 16 4 H -0.29 -15.34 7.11 99.48 0.71 -14.63 16 5 H -0.28 -14.88 6.58 99.48 0.65 -14.23 16 6 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.55 -30.40 9.37 24.83 0.23 -30.17 16 8 H 0.09 4.67 5.95 -2.91 -0.02 4.65 16 9 C 0.55 28.23 7.33 86.36 0.63 28.87 16 10 O -0.64 -35.45 11.68 -4.31 -0.05 -35.50 16 11 N -0.63 -25.52 2.94 -822.24 -2.42 -27.94 16 12 C 0.11 3.89 6.54 86.56 0.57 4.45 16 13 C 0.10 3.26 6.60 86.56 0.57 3.83 16 14 N -0.60 -16.64 2.95 -821.44 -2.42 -19.06 16 15 C 0.54 14.78 7.64 86.57 0.66 15.44 16 16 O -0.59 -20.48 15.65 -4.08 -0.06 -20.55 16 17 C -0.22 -4.00 8.95 23.43 0.21 -3.79 16 18 C -0.04 -0.70 8.36 24.52 0.20 -0.49 16 19 C -0.06 -0.71 2.57 -11.42 -0.03 -0.74 16 20 C -0.15 -1.57 5.41 30.69 0.17 -1.40 16 21 C 0.06 0.59 6.84 72.02 0.49 1.09 16 22 O -0.41 -6.00 10.77 -148.98 -1.60 -7.61 16 23 C 0.06 0.61 6.84 72.01 0.49 1.11 16 24 C -0.15 -1.64 5.41 30.69 0.17 -1.47 16 25 C 0.10 2.40 6.51 86.42 0.56 2.96 16 26 C 0.10 3.09 6.58 86.42 0.57 3.66 16 27 H 0.29 14.88 8.29 -92.70 -0.77 14.11 16 28 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.09 3.67 5.32 -2.39 -0.01 3.65 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.10 3.01 7.01 -2.39 -0.02 3.00 16 32 H 0.16 1.88 5.69 -2.91 -0.02 1.86 16 33 H 0.11 2.22 7.50 -2.91 -0.02 2.20 16 34 H 0.10 0.81 7.81 -2.39 -0.02 0.80 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.13 2.00 5.30 -2.39 -0.01 1.98 16 45 H 0.09 2.95 7.02 -2.39 -0.02 2.93 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.53 362.62 2.42 -70.11 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.93 Total: 6.83 kcal Atomic # 6 Polarization: 21.62 SS G_CDS: 5.97 Total: 27.59 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -4.54 Total: -94.05 kcal Atomic # 8 Polarization: -61.94 SS G_CDS: -1.72 Total: -63.65 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 1.78 Total: 53.19 kcal Total: -72.53 2.42 -70.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493423267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.231 kcal (2) G-P(sol) polarization free energy of solvation -72.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds