Wall clock time and date at job start Fri Apr 10 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48491 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46837 * 299.99941 * 3 2 1 6 6 H 1.48499 * 109.46870 * 59.99464 * 3 2 1 7 7 C 1.38816 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99855 * 169.54276 * 7 2 1 9 9 N 1.36934 * 119.99998 * 349.54717 * 7 2 1 10 10 C 1.47242 * 121.12642 * 150.14425 * 9 7 2 11 11 C 1.53282 * 108.58978 * 128.77344 * 10 9 7 12 12 O 1.43125 * 109.22445 * 52.99924 * 11 10 9 13 13 C 1.41885 * 114.36946 * 299.10455 * 12 11 10 14 14 C 1.54374 * 110.71876 * 296.72043 * 13 12 11 15 15 C 1.54462 * 102.86786 * 276.30513 * 14 13 12 16 16 N 1.47080 * 107.29395 * 338.49930 * 15 14 13 17 17 C 1.34776 * 125.62813 * 179.00357 * 16 15 14 18 18 O 1.21619 * 120.00413 * 175.37784 * 17 16 15 19 19 C 1.47105 * 120.00029 * 355.36758 * 17 16 15 20 20 C 1.32087 * 118.87336 * 81.01275 * 19 17 16 21 21 C 1.50268 * 122.57813 * 180.37034 * 20 19 17 22 22 O 1.42895 * 110.09446 * 344.35618 * 21 20 19 23 23 C 1.43274 * 113.09637 * 50.52909 * 22 21 20 24 24 C 1.50410 * 118.88059 * 260.75060 * 19 17 16 25 25 C 1.47574 * 108.74442 * 359.01563 * 16 15 14 26 26 C 1.47338 * 121.08074 * 330.12238 * 9 7 2 27 27 H 0.97000 * 119.99744 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.60601 * 9.04826 * 10 9 7 29 29 H 1.09003 * 109.76954 * 248.59960 * 10 9 7 30 30 H 1.08994 * 109.51060 * 293.07530 * 11 10 9 31 31 H 1.08998 * 109.51008 * 172.91906 * 11 10 9 32 32 H 1.09006 * 110.73166 * 34.65031 * 14 13 12 33 33 H 1.09001 * 110.73212 * 157.77703 * 14 13 12 34 34 H 1.08998 * 109.87684 * 97.92159 * 15 14 13 35 35 H 1.09000 * 109.87588 * 218.92120 * 15 14 13 36 36 H 1.08001 * 118.71254 * 0.34759 * 20 19 17 37 37 H 1.09002 * 109.36439 * 104.54903 * 21 20 19 38 38 H 1.09004 * 109.36763 * 224.29084 * 21 20 19 39 39 H 1.08996 * 109.64160 * 50.85404 * 23 22 21 40 40 H 1.09001 * 109.63692 * 171.27034 * 23 22 21 41 41 H 1.09002 * 109.44992 * 283.37385 * 24 19 17 42 42 H 1.08995 * 109.45558 * 43.30797 * 24 19 17 43 43 H 1.08994 * 110.38033 * 264.48103 * 25 16 15 44 44 H 1.09001 * 110.37328 * 142.13478 * 25 16 15 45 45 H 1.08997 * 109.67343 * 109.43661 * 26 9 7 46 46 H 1.09002 * 109.67513 * 348.93799 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0768 -1.2100 -0.1692 9 7 1.3426 -2.3781 0.2162 10 6 1.8118 -3.6401 -0.3798 11 6 1.9128 -4.6955 0.7271 12 8 0.6663 -4.7653 1.4269 13 6 0.2821 -3.5553 2.0606 14 6 1.2965 -3.1673 3.1576 15 6 0.8214 -3.9935 4.3732 16 7 -0.5907 -4.3354 4.1445 17 6 -1.3646 -5.0682 4.9694 18 8 -2.5455 -5.2194 4.7209 19 6 -0.7809 -5.6855 6.1704 20 6 -0.6134 -4.9446 7.2510 21 6 -0.0181 -5.4871 8.5197 22 8 -0.0212 -6.9158 8.4917 23 6 0.5456 -7.4556 7.2917 24 6 -0.4007 -7.1401 6.1278 25 6 -1.0202 -3.7439 2.8626 26 6 0.1309 -2.4224 1.0532 27 1 -0.4850 0.8401 -0.0004 28 1 2.7920 -3.4889 -0.8319 29 1 1.1056 -3.9737 -1.1402 30 1 2.7056 -4.4192 1.4222 31 1 2.1370 -5.6663 0.2852 32 1 2.3073 -3.4541 2.8674 33 1 1.2458 -2.0993 3.3697 34 1 1.4144 -4.9042 4.4570 35 1 0.9193 -3.4026 5.2839 36 1 -0.9159 -3.9082 7.2216 37 1 1.0067 -5.1296 8.6197 38 1 -0.6057 -5.1428 9.3708 39 1 1.5198 -7.0016 7.1101 40 1 0.6576 -8.5351 7.3929 41 1 -1.2988 -7.7525 6.2093 42 1 0.1016 -7.3566 5.1851 43 1 -1.5045 -2.7821 3.0316 44 1 -1.6938 -4.4220 2.3385 45 1 -0.7420 -2.6030 0.4258 46 1 0.0142 -1.4755 1.5803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972354638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:17 Heat of formation + Delta-G solvation = -69.772127 kcal Electronic energy + Delta-G solvation = -28728.084808 eV Core-core repulsion = 24812.257579 eV Total energy + Delta-G solvation = -3915.827229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52475 -39.52657 -38.44811 -36.11912 -34.49996 -34.01169 -31.52203 -31.38313 -31.24123 -29.59652 -27.65055 -26.65312 -25.22957 -24.16885 -23.59827 -22.76244 -21.50813 -20.29608 -19.03185 -18.21544 -17.46634 -17.10026 -16.66979 -16.13253 -16.01455 -15.30252 -15.20006 -15.14049 -14.49862 -14.38034 -14.30370 -14.01271 -13.55948 -13.41463 -13.05846 -12.93101 -12.92844 -12.77062 -12.58900 -12.28835 -12.21216 -11.75184 -11.40049 -11.16451 -11.08566 -10.99451 -10.93160 -10.74749 -10.36298 -10.34873 -10.30030 -10.06821 -9.63641 -9.57687 -9.26153 -9.07462 -8.63308 -8.50551 -6.76278 -5.91003 -3.39429 1.53574 2.59908 3.09080 3.28004 3.36161 3.37711 3.57078 4.12068 4.34894 4.38897 4.48020 4.65452 4.83446 4.88886 4.93047 5.02636 5.09071 5.20673 5.21831 5.29787 5.34892 5.37786 5.42483 5.53953 5.65937 5.68245 5.76597 5.81786 5.92881 5.98292 6.02030 6.11091 6.22008 6.26658 6.31372 6.38973 6.45509 6.58940 6.74439 6.77183 7.00659 7.39665 7.59323 7.65174 7.87123 8.17266 8.28046 9.04666 9.65749 10.25360 11.17136 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.003334 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.606533 B = 8395.098519 C = 8731.355933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.254 4.254 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.109 3.891 11 C 0.046 3.954 12 O -0.374 6.374 13 C 0.085 3.915 14 C -0.144 4.144 15 C 0.107 3.893 16 N -0.604 5.604 17 C 0.566 3.434 18 O -0.539 6.539 19 C -0.130 4.130 20 C -0.162 4.162 21 C 0.092 3.908 22 O -0.378 6.378 23 C 0.062 3.938 24 C -0.109 4.109 25 C 0.123 3.877 26 C 0.165 3.835 27 H 0.256 0.744 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.031 0.969 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -11.025 13.541 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.085 0.915 9 N -0.316 5.316 10 C -0.018 4.018 11 C -0.032 4.032 12 O -0.293 6.293 13 C 0.043 3.957 14 C -0.182 4.182 15 C -0.016 4.016 16 N -0.337 5.337 17 C 0.354 3.646 18 O -0.417 6.417 19 C -0.133 4.133 20 C -0.181 4.181 21 C 0.016 3.984 22 O -0.297 6.297 23 C -0.015 4.015 24 C -0.146 4.146 25 C 0.001 3.999 26 C 0.038 3.962 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.049 0.951 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.037 -11.259 13.588 17.906 hybrid contribution 0.667 1.427 -0.456 1.640 sum 3.704 -9.832 13.132 16.818 Atomic orbital electron populations 1.69966 1.05244 1.25645 1.53931 1.25170 0.95440 0.98434 1.00262 0.86182 0.79231 0.83703 0.77410 1.20213 1.21539 1.21489 1.19188 0.90830 0.83472 1.44839 0.91453 1.44038 1.29953 1.03245 1.54388 1.21611 0.98726 0.87719 0.93712 1.23099 0.85802 0.99563 0.94686 1.87650 1.39300 1.33141 1.69249 1.22718 0.92253 0.87801 0.92894 1.23035 1.00708 1.00720 0.93730 1.22071 0.81395 0.99076 0.99069 1.48576 1.12267 1.51314 1.21583 1.18124 0.85682 0.77997 0.82781 1.90822 1.15354 1.61386 1.74094 1.20831 1.01484 0.96807 0.94170 1.23328 0.99333 1.00492 0.94996 1.21474 1.00247 0.81010 0.95656 1.88126 1.82899 1.19500 1.39156 1.22701 0.95053 0.99790 0.83972 1.20994 1.01376 0.91937 1.00301 1.22150 0.96435 0.99078 0.82255 1.21129 0.89212 0.95060 0.90774 0.93417 0.91930 0.95529 0.93521 0.89974 0.89524 0.89353 0.91827 0.91809 0.85986 0.91154 0.87476 0.92345 0.88022 0.89042 0.89464 0.89550 0.89749 0.95131 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.05 55.49 0.61 -24.35 16 2 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 3 Si 0.91 20.63 29.57 -169.99 -5.03 15.60 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.53 9.66 -15.06 -0.15 -6.67 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -13.98 2.97 -172.18 -0.51 -14.49 16 10 C 0.11 2.17 6.72 -3.49 -0.02 2.15 16 11 C 0.05 0.78 6.78 37.30 0.25 1.03 16 12 O -0.37 -7.01 10.28 -35.22 -0.36 -7.37 16 13 C 0.09 1.57 0.84 -89.65 -0.08 1.50 16 14 C -0.14 -2.30 5.87 -25.24 -0.15 -2.44 16 15 C 0.11 1.44 6.46 -2.96 -0.02 1.42 16 16 N -0.60 -9.53 3.33 -172.16 -0.57 -10.10 16 17 C 0.57 9.21 7.09 -12.66 -0.09 9.12 16 18 O -0.54 -10.81 17.41 5.26 0.09 -10.72 16 19 C -0.13 -1.65 4.80 -103.09 -0.49 -2.14 16 20 C -0.16 -1.73 9.65 -36.44 -0.35 -2.08 16 21 C 0.09 0.79 7.04 35.80 0.25 1.04 16 22 O -0.38 -3.89 10.83 -35.23 -0.38 -4.27 16 23 C 0.06 0.52 6.89 37.31 0.26 0.78 16 24 C -0.11 -1.14 6.09 -27.88 -0.17 -1.31 16 25 C 0.12 2.17 6.07 -2.88 -0.02 2.15 16 26 C 0.16 3.71 4.01 -3.91 -0.02 3.69 16 27 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 28 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.75 6.22 -51.93 -0.32 0.43 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.37 6.07 -51.93 -0.32 1.06 16 33 H 0.09 1.48 7.82 -51.93 -0.41 1.08 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.12 1.25 7.99 -52.49 -0.42 0.84 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.51 7.99 -51.93 -0.42 1.09 16 44 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 2.39 6.06 -51.93 -0.31 2.07 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -31.52 363.69 -8.77 -40.29 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.22 Total: 1.63 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.88 Total: 8.29 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.47 Total: -48.94 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.65 Total: -22.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.52 -8.77 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972354638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.480 kcal (2) G-P(sol) polarization free energy of solvation -31.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds