Wall clock time and date at job start Fri Apr 10 2020 14:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00188 * 2 1 4 4 H 1.48491 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46837 * 299.99941 * 3 2 1 6 6 H 1.48499 * 109.46870 * 59.99464 * 3 2 1 7 7 C 1.38816 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99855 * 169.54276 * 7 2 1 9 9 N 1.36934 * 119.99998 * 349.54717 * 7 2 1 10 10 C 1.47242 * 121.12642 * 150.14425 * 9 7 2 11 11 C 1.53282 * 108.58978 * 128.77344 * 10 9 7 12 12 O 1.43125 * 109.22445 * 52.99924 * 11 10 9 13 13 C 1.41885 * 114.36946 * 299.10455 * 12 11 10 14 14 C 1.54374 * 110.71876 * 296.72043 * 13 12 11 15 15 C 1.54462 * 102.86786 * 276.30513 * 14 13 12 16 16 N 1.47080 * 107.29395 * 338.49930 * 15 14 13 17 17 C 1.34776 * 125.62813 * 179.00357 * 16 15 14 18 18 O 1.21619 * 120.00413 * 175.37784 * 17 16 15 19 19 C 1.47105 * 120.00029 * 355.36758 * 17 16 15 20 20 C 1.32087 * 118.87336 * 81.01275 * 19 17 16 21 21 C 1.50268 * 122.57813 * 180.37034 * 20 19 17 22 22 O 1.42895 * 110.09446 * 344.35618 * 21 20 19 23 23 C 1.43274 * 113.09637 * 50.52909 * 22 21 20 24 24 C 1.50410 * 118.88059 * 260.75060 * 19 17 16 25 25 C 1.47574 * 108.74442 * 359.01563 * 16 15 14 26 26 C 1.47338 * 121.08074 * 330.12238 * 9 7 2 27 27 H 0.97000 * 119.99744 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.60601 * 9.04826 * 10 9 7 29 29 H 1.09003 * 109.76954 * 248.59960 * 10 9 7 30 30 H 1.08994 * 109.51060 * 293.07530 * 11 10 9 31 31 H 1.08998 * 109.51008 * 172.91906 * 11 10 9 32 32 H 1.09006 * 110.73166 * 34.65031 * 14 13 12 33 33 H 1.09001 * 110.73212 * 157.77703 * 14 13 12 34 34 H 1.08998 * 109.87684 * 97.92159 * 15 14 13 35 35 H 1.09000 * 109.87588 * 218.92120 * 15 14 13 36 36 H 1.08001 * 118.71254 * 0.34759 * 20 19 17 37 37 H 1.09002 * 109.36439 * 104.54903 * 21 20 19 38 38 H 1.09004 * 109.36763 * 224.29084 * 21 20 19 39 39 H 1.08996 * 109.64160 * 50.85404 * 23 22 21 40 40 H 1.09001 * 109.63692 * 171.27034 * 23 22 21 41 41 H 1.09002 * 109.44992 * 283.37385 * 24 19 17 42 42 H 1.08995 * 109.45558 * 43.30797 * 24 19 17 43 43 H 1.08994 * 110.38033 * 264.48103 * 25 16 15 44 44 H 1.09001 * 110.37328 * 142.13478 * 25 16 15 45 45 H 1.08997 * 109.67343 * 109.43661 * 26 9 7 46 46 H 1.09002 * 109.67513 * 348.93799 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0768 -1.2100 -0.1692 9 7 1.3426 -2.3781 0.2162 10 6 1.8118 -3.6401 -0.3798 11 6 1.9128 -4.6955 0.7271 12 8 0.6663 -4.7653 1.4269 13 6 0.2821 -3.5553 2.0606 14 6 1.2965 -3.1673 3.1576 15 6 0.8214 -3.9935 4.3732 16 7 -0.5907 -4.3354 4.1445 17 6 -1.3646 -5.0682 4.9694 18 8 -2.5455 -5.2194 4.7209 19 6 -0.7809 -5.6855 6.1704 20 6 -0.6134 -4.9446 7.2510 21 6 -0.0181 -5.4871 8.5197 22 8 -0.0212 -6.9158 8.4917 23 6 0.5456 -7.4556 7.2917 24 6 -0.4007 -7.1401 6.1278 25 6 -1.0202 -3.7439 2.8626 26 6 0.1309 -2.4224 1.0532 27 1 -0.4850 0.8401 -0.0004 28 1 2.7920 -3.4889 -0.8319 29 1 1.1056 -3.9737 -1.1402 30 1 2.7056 -4.4192 1.4222 31 1 2.1370 -5.6663 0.2852 32 1 2.3073 -3.4541 2.8674 33 1 1.2458 -2.0993 3.3697 34 1 1.4144 -4.9042 4.4570 35 1 0.9193 -3.4026 5.2839 36 1 -0.9159 -3.9082 7.2216 37 1 1.0067 -5.1296 8.6197 38 1 -0.6057 -5.1428 9.3708 39 1 1.5198 -7.0016 7.1101 40 1 0.6576 -8.5351 7.3929 41 1 -1.2988 -7.7525 6.2093 42 1 0.1016 -7.3566 5.1851 43 1 -1.5045 -2.7821 3.0316 44 1 -1.6938 -4.4220 2.3385 45 1 -0.7420 -2.6030 0.4258 46 1 0.0142 -1.4755 1.5803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972354638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:17 Heat of formation + Delta-G solvation = -91.072580 kcal Electronic energy + Delta-G solvation = -28729.008465 eV Core-core repulsion = 24812.257579 eV Total energy + Delta-G solvation = -3916.750886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.79029 -40.63899 -39.58073 -37.55312 -36.26262 -34.92958 -33.25265 -32.79408 -32.09857 -30.94413 -29.20211 -28.01537 -26.53182 -25.21416 -24.87639 -24.07851 -23.08850 -21.43431 -20.51790 -19.26311 -18.92336 -18.48950 -17.70769 -17.32330 -17.21655 -16.80709 -16.40501 -16.15034 -16.03866 -15.77600 -15.42026 -15.26187 -15.13132 -14.75343 -14.54529 -14.30163 -14.00199 -13.79238 -13.71225 -13.55712 -13.49396 -13.06978 -12.83746 -12.71138 -12.52465 -12.48278 -12.25310 -12.10345 -11.99035 -11.91069 -11.87573 -11.28052 -11.17539 -10.77470 -10.53767 -10.49067 -10.11353 -9.80778 -8.68589 -7.89602 -5.41620 0.65215 1.36122 1.46520 1.49090 1.58730 1.88015 2.47314 2.69752 2.92575 3.24519 3.32015 3.48679 3.55230 3.71152 3.86643 3.92827 3.97755 4.17891 4.25318 4.27299 4.28003 4.35168 4.42011 4.47766 4.53375 4.55595 4.62350 4.66769 4.72129 4.74173 4.78450 4.90002 4.94805 4.99068 5.03923 5.09452 5.15997 5.22880 5.24933 5.48698 5.51419 5.61862 6.14221 6.31103 6.35359 6.39784 6.91137 7.07242 7.73856 8.30842 9.16543 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019677 B = 0.003334 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.606533 B = 8395.098519 C = 8731.355933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.297 1.297 6 H -0.289 1.289 7 C -0.258 4.258 8 H 0.075 0.925 9 N -0.608 5.608 10 C 0.102 3.898 11 C 0.053 3.947 12 O -0.383 6.383 13 C 0.094 3.906 14 C -0.136 4.136 15 C 0.114 3.886 16 N -0.603 5.603 17 C 0.564 3.436 18 O -0.589 6.589 19 C -0.156 4.156 20 C -0.140 4.140 21 C 0.090 3.910 22 O -0.396 6.396 23 C 0.065 3.935 24 C -0.106 4.106 25 C 0.125 3.875 26 C 0.177 3.823 27 H 0.250 0.750 28 H 0.075 0.925 29 H 0.011 0.989 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.065 0.935 45 H -0.010 1.010 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 -12.015 15.798 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.242 4.242 3 Si 0.797 3.203 4 H -0.186 1.186 5 H -0.224 1.224 6 H -0.216 1.216 7 C -0.387 4.387 8 H 0.093 0.907 9 N -0.333 5.333 10 C -0.023 4.023 11 C -0.024 4.024 12 O -0.303 6.303 13 C 0.052 3.948 14 C -0.174 4.174 15 C -0.008 4.008 16 N -0.335 5.335 17 C 0.354 3.646 18 O -0.470 6.470 19 C -0.159 4.159 20 C -0.159 4.159 21 C 0.014 3.986 22 O -0.315 6.315 23 C -0.011 4.011 24 C -0.143 4.143 25 C 0.002 3.998 26 C 0.050 3.950 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.008 0.992 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.995 -12.275 15.854 20.927 hybrid contribution -0.254 1.743 -1.233 2.150 sum 5.741 -10.532 14.621 18.912 Atomic orbital electron populations 1.70146 1.06775 1.25869 1.55647 1.25910 0.96079 1.01545 1.00681 0.85179 0.78769 0.79697 0.76638 1.18603 1.22419 1.21616 1.19534 0.91308 0.84346 1.43561 0.90749 1.44293 1.29804 1.04093 1.55089 1.21810 0.98690 0.87115 0.94687 1.23182 0.85379 1.00105 0.93728 1.87653 1.40456 1.32703 1.69444 1.22371 0.93656 0.86324 0.92411 1.22928 1.00243 1.00546 0.93644 1.22171 0.79886 1.00028 0.98692 1.48632 1.13314 1.50960 1.20550 1.18823 0.85065 0.77178 0.83486 1.90787 1.17633 1.63029 1.75515 1.20735 1.04067 0.97999 0.93076 1.23636 0.96782 1.00399 0.95091 1.21722 1.01841 0.80353 0.94658 1.88115 1.83241 1.20356 1.39775 1.22818 0.94852 1.01065 0.82396 1.21013 1.01443 0.90294 1.01579 1.21929 0.95899 0.98472 0.83524 1.20824 0.87750 0.95580 0.90812 0.94058 0.90642 0.97082 0.91880 0.86517 0.88651 0.90488 0.89512 0.89151 0.85796 0.88418 0.85773 0.90594 0.86238 0.90388 0.89324 0.90307 0.91647 0.99190 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.81 11.05 21.65 0.24 -53.57 16 2 C -0.05 -2.48 5.08 84.86 0.43 -2.05 16 3 Si 0.97 42.69 29.57 68.60 2.03 44.72 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.26 -13.27 9.66 84.03 0.81 -12.46 16 8 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 9 N -0.61 -29.06 2.97 -698.64 -2.08 -31.14 16 10 C 0.10 4.02 6.72 86.33 0.58 4.60 16 11 C 0.05 1.67 6.78 72.08 0.49 2.16 16 12 O -0.38 -13.99 10.28 -148.95 -1.53 -15.52 16 13 C 0.09 3.50 0.84 -10.17 -0.01 3.49 16 14 C -0.14 -4.11 5.87 31.56 0.19 -3.93 16 15 C 0.11 2.76 6.46 86.77 0.56 3.32 16 16 N -0.60 -18.65 3.33 -816.85 -2.72 -21.37 16 17 C 0.56 18.24 7.09 86.57 0.61 18.85 16 18 O -0.59 -24.39 17.41 -4.09 -0.07 -24.47 16 19 C -0.16 -3.68 4.80 -18.59 -0.09 -3.77 16 20 C -0.14 -2.59 9.65 24.59 0.24 -2.35 16 21 C 0.09 1.18 7.04 71.10 0.50 1.68 16 22 O -0.40 -6.81 10.83 -148.98 -1.61 -8.42 16 23 C 0.06 0.89 6.89 72.08 0.50 1.38 16 24 C -0.11 -2.03 6.09 29.85 0.18 -1.85 16 25 C 0.13 4.57 6.07 86.55 0.53 5.10 16 26 C 0.18 8.33 4.01 86.01 0.34 8.67 16 27 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 28 H 0.08 2.73 7.96 -2.39 -0.02 2.71 16 29 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 1.81 6.22 -2.39 -0.01 1.80 16 31 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.10 2.74 6.07 -2.38 -0.01 2.73 16 33 H 0.08 2.52 7.82 -2.39 -0.02 2.51 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.12 2.23 7.99 -2.91 -0.02 2.20 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 40 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 2.95 7.99 -2.39 -0.02 2.93 16 44 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 45 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 46 H 0.07 3.70 6.06 -2.39 -0.01 3.68 16 Total: -1.00 -71.22 363.69 1.08 -70.14 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.97 Total: 16.77 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 5.86 Total: 22.85 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -4.56 Total: -106.07 kcal Atomic # 8 Polarization: -45.19 SS G_CDS: -3.22 Total: -48.40 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.22 1.08 -70.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972354638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.937 kcal (2) G-P(sol) polarization free energy of solvation -71.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds