Wall clock time and date at job start Fri Apr 10 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 119.99815 * 2 1 4 4 H 1.48502 * 109.47436 * 86.14599 * 3 2 1 5 5 H 1.48502 * 109.47272 * 326.14852 * 3 2 1 6 6 H 1.48502 * 109.47140 * 206.14997 * 3 2 1 7 7 C 1.38809 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 163.47044 * 7 2 1 9 9 N 1.36933 * 120.00128 * 343.46840 * 7 2 1 10 10 C 1.47153 * 120.98142 * 333.25122 * 9 7 2 11 11 C 1.52882 * 108.60955 * 230.49640 * 10 9 7 12 12 O 1.42961 * 109.29784 * 307.94038 * 11 10 9 13 13 C 1.42958 * 114.16770 * 62.44815 * 12 11 10 14 14 H 1.09000 * 109.56290 * 57.36880 * 13 12 11 15 15 C 1.53007 * 109.51179 * 177.49401 * 13 12 11 16 16 N 1.46491 * 109.47122 * 299.74500 * 15 13 12 17 17 C 1.34782 * 120.00200 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99777 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99876 * 179.97438 * 17 16 15 20 20 H 1.08993 * 110.66499 * 59.30494 * 19 17 16 21 21 C 1.54997 * 110.74933 * 296.08094 * 19 17 16 22 22 C 1.55824 * 102.79143 * 241.67689 * 21 19 17 23 23 H 1.08999 * 115.38794 * 158.11724 * 22 21 19 24 24 O 1.46534 * 101.24035 * 32.41895 * 22 21 19 25 25 C 1.47027 * 99.71955 * 305.81845 * 24 22 21 26 26 H 1.08996 * 115.88614 * 179.59449 * 25 24 22 27 27 C 1.55813 * 101.23490 * 305.89070 * 25 24 22 28 28 H 1.09004 * 118.20301 * 173.33693 * 27 25 24 29 29 C 1.53003 * 117.24189 * 330.03908 * 27 25 24 30 30 C 1.53417 * 60.93375 * 89.21870 * 29 27 25 31 31 H 1.09000 * 120.86625 * 112.60814 * 30 29 27 32 32 C 1.47159 * 120.98224 * 153.53373 * 9 7 2 33 33 H 0.96998 * 119.99938 * 0.02562 * 1 2 3 34 34 H 1.09000 * 109.68179 * 350.28080 * 10 9 7 35 35 H 1.09005 * 109.68118 * 110.83844 * 10 9 7 36 36 H 1.08995 * 109.58367 * 187.92159 * 11 10 9 37 37 H 1.09002 * 109.36218 * 67.81979 * 11 10 9 38 38 H 1.09005 * 109.46886 * 59.74270 * 15 13 12 39 39 H 1.09004 * 109.47097 * 179.74239 * 15 13 12 40 40 H 0.97004 * 120.00243 * 359.97438 * 16 15 13 41 41 H 1.09003 * 110.75242 * 0.02562 * 21 19 17 42 42 H 1.09010 * 110.74782 * 123.16979 * 21 19 17 43 43 H 1.08996 * 117.41132 * 196.94727 * 29 27 25 44 44 H 1.08995 * 117.40769 * 341.55794 * 29 27 25 45 45 H 1.09003 * 109.68051 * 249.16287 * 32 9 7 46 46 H 1.08997 * 109.67837 * 9.71802 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4161 2.0935 1.3969 5 1 1.4906 2.6278 -0.7799 6 1 3.5860 1.4180 -0.6170 7 6 2.0102 -1.2021 0.0005 8 1 3.0568 -1.2216 -0.2656 9 7 1.3681 -2.3633 0.3385 10 6 0.1972 -2.3497 1.2298 11 6 0.4180 -3.3763 2.3409 12 8 0.7588 -4.6368 1.7587 13 6 1.9765 -4.6255 1.0099 14 1 2.7952 -4.2960 1.6496 15 6 2.2697 -6.0343 0.4898 16 7 2.4074 -6.9539 1.6218 17 6 2.6687 -8.2579 1.4028 18 8 2.7902 -8.6698 0.2685 19 6 2.8110 -9.2037 2.5673 20 1 1.8989 -9.2194 3.1638 21 6 4.0321 -8.8191 3.4411 22 6 4.9419 -10.0799 3.3365 23 1 5.9972 -9.9139 3.5529 24 8 4.6365 -10.5407 1.9795 25 6 3.1724 -10.6368 2.0735 26 1 2.6579 -10.9632 1.1697 27 6 3.0079 -11.5559 3.3209 28 1 2.0032 -11.7217 3.7097 29 6 4.1159 -12.5762 3.5900 30 6 4.2337 -11.1710 4.1945 31 1 4.1712 -11.0188 5.2720 32 6 1.8322 -3.6624 -0.1740 33 1 -0.4850 0.8400 -0.0004 34 1 0.0795 -1.3578 1.6660 35 1 -0.6974 -2.6114 0.6647 36 1 -0.4944 -3.4811 2.9280 37 1 1.2304 -3.0417 2.9860 38 1 1.4497 -6.3639 -0.1484 39 1 3.1959 -6.0240 -0.0849 40 1 2.3106 -6.6244 2.5290 41 1 4.5374 -7.9431 3.0344 42 1 3.7284 -8.6431 4.4731 43 1 3.8879 -13.3969 4.2700 44 1 4.7824 -12.8228 2.7636 45 1 1.1049 -4.0584 -0.8828 46 1 2.7965 -3.5393 -0.6668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035445474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:08 Heat of formation + Delta-G solvation = -47.723203 kcal Electronic energy + Delta-G solvation = -27655.461705 eV Core-core repulsion = 23740.590589 eV Total energy + Delta-G solvation = -3914.871116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.83615 -39.39799 -38.39599 -34.92646 -34.57797 -34.30054 -32.60925 -31.46702 -30.58807 -29.72320 -27.61062 -25.81270 -24.29140 -23.25925 -22.97365 -21.75373 -20.74857 -20.59284 -20.06196 -19.48280 -17.58851 -17.03916 -16.88037 -16.54222 -16.05364 -15.62015 -15.12445 -14.90803 -14.59709 -14.36613 -14.34292 -13.86973 -13.57384 -13.24193 -13.16908 -12.89856 -12.75761 -12.74081 -12.47221 -12.02987 -11.81725 -11.58878 -11.57559 -11.48431 -11.15510 -10.89553 -10.75323 -10.60141 -10.44124 -10.30888 -10.27823 -10.03457 -10.02524 -9.80844 -9.62358 -9.11469 -8.96582 -8.58366 -6.79344 -5.87969 -3.32275 2.65057 2.99994 3.23411 3.31675 3.38904 3.40509 3.51461 4.14085 4.16554 4.22045 4.24887 4.39835 4.44121 4.49082 4.70171 4.81583 4.86869 5.06575 5.12520 5.18863 5.24468 5.29724 5.41414 5.44015 5.46733 5.49680 5.50099 5.64823 5.75712 5.77330 5.84324 5.87517 6.00028 6.11719 6.19796 6.26456 6.32975 6.44896 6.52232 6.72066 7.05863 7.47002 7.55687 7.67432 7.80588 8.26075 8.29760 9.07645 9.70100 10.26986 11.20275 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.002320 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.337988 B =12065.772112 C =12155.553849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.040 3.960 12 O -0.390 6.390 13 C 0.065 3.935 14 H 0.058 0.942 15 C 0.131 3.869 16 N -0.719 5.719 17 C 0.522 3.478 18 O -0.538 6.538 19 C -0.135 4.135 20 H 0.110 0.890 21 C -0.134 4.134 22 C 0.089 3.911 23 H 0.133 0.867 24 O -0.363 6.363 25 C 0.118 3.882 26 H 0.140 0.860 27 C -0.199 4.199 28 H 0.124 0.876 29 C -0.132 4.132 30 C -0.196 4.196 31 H 0.123 0.877 32 C 0.121 3.879 33 H 0.255 0.745 34 H 0.094 0.906 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.403 0.597 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.030 0.970 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -20.738 11.724 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.318 5.318 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.005 3.995 14 H 0.076 0.924 15 C 0.007 3.993 16 N -0.370 5.370 17 C 0.307 3.693 18 O -0.415 6.415 19 C -0.157 4.157 20 H 0.128 0.872 21 C -0.172 4.172 22 C 0.031 3.969 23 H 0.151 0.849 24 O -0.282 6.282 25 C 0.060 3.940 26 H 0.157 0.843 27 C -0.217 4.217 28 H 0.142 0.858 29 C -0.169 4.169 30 C -0.214 4.214 31 H 0.141 0.859 32 C -0.006 4.006 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.046 0.954 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.237 0.763 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.048 0.952 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.047 -21.034 10.676 24.351 hybrid contribution 0.121 1.518 0.713 1.681 sum 6.168 -19.516 11.389 23.423 Atomic orbital electron populations 1.70034 1.05276 1.25674 1.53678 1.25066 0.95375 0.98523 1.00690 0.86213 0.79135 0.83412 0.77637 1.21400 1.21652 1.20306 1.19214 0.92525 0.84396 1.42374 0.91307 1.44050 1.33631 1.01096 1.52986 1.21354 0.89236 0.98218 0.89856 1.23248 0.99013 0.84966 0.96537 1.87775 1.41113 1.32762 1.69284 1.22806 0.87426 0.93911 0.95311 0.92400 1.21431 1.02036 0.87252 0.88617 1.45909 1.72183 1.08123 1.10749 1.20225 0.76267 0.82614 0.90199 1.90709 1.50013 1.76975 1.23755 1.22926 1.00974 0.95533 0.96273 0.87179 1.23176 0.94863 0.98879 1.00274 1.24221 0.99394 0.91401 0.81901 0.84904 1.90243 1.20911 1.87283 1.29723 1.24083 0.81952 0.90982 0.96955 0.84259 1.24352 0.95238 1.03258 0.98883 0.85765 1.22868 1.00132 0.91352 1.02574 1.24455 1.01559 0.96621 0.98772 0.85930 1.21450 0.98979 0.87192 0.92959 0.93482 0.88818 0.95388 0.90013 0.94155 0.90739 0.90213 0.76299 0.89871 0.89404 0.87978 0.88137 0.95198 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.15 55.49 0.62 -25.15 16 2 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.27 29.58 -169.99 -5.03 16.24 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.26 -6.89 9.64 -15.06 -0.15 -7.04 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 9 N -0.59 -14.70 3.05 -172.07 -0.53 -15.22 16 10 C 0.14 3.26 5.41 -3.75 -0.02 3.24 16 11 C 0.04 0.75 6.97 37.10 0.26 1.01 16 12 O -0.39 -7.08 10.14 -35.23 -0.36 -7.43 16 13 C 0.07 1.12 2.86 -26.57 -0.08 1.04 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.96 5.37 -4.04 -0.02 1.94 16 16 N -0.72 -9.27 5.43 -60.29 -0.33 -9.60 16 17 C 0.52 7.02 6.99 -10.98 -0.08 6.94 16 18 O -0.54 -9.36 15.89 5.56 0.09 -9.27 16 19 C -0.14 -1.32 2.88 -89.21 -0.26 -1.57 16 20 H 0.11 0.86 8.03 -51.93 -0.42 0.44 16 21 C -0.13 -1.08 6.13 -24.17 -0.15 -1.23 16 22 C 0.09 0.75 5.67 -23.72 -0.13 0.62 16 23 H 0.13 0.92 8.14 -51.93 -0.42 0.49 16 24 O -0.36 -4.43 10.79 -35.23 -0.38 -4.81 16 25 C 0.12 1.23 4.60 -23.72 -0.11 1.12 16 26 H 0.14 1.57 7.75 -51.93 -0.40 1.17 16 27 C -0.20 -1.55 6.63 -87.86 -0.58 -2.13 16 28 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 29 C -0.13 -0.96 9.81 -26.51 -0.26 -1.22 16 30 C -0.20 -1.39 6.66 -87.64 -0.58 -1.97 16 31 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 32 C 0.12 2.51 6.03 -3.53 -0.02 2.49 16 33 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.40 4.47 8.36 -40.82 -0.34 4.13 16 41 H 0.08 0.74 7.76 -51.93 -0.40 0.33 16 42 H 0.09 0.52 8.04 -51.92 -0.42 0.10 16 43 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.10 0.85 7.66 -51.93 -0.40 0.45 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 1.27 7.96 -51.93 -0.41 0.85 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -32.57 365.45 -9.98 -42.55 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -7.31 Total: 3.96 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.26 Total: 3.22 kcal Atomic # 7 Polarization: -49.74 SS G_CDS: -0.23 Total: -49.97 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.65 Total: -21.51 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.57 -9.98 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035445474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.169 kcal (2) G-P(sol) polarization free energy of solvation -32.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds