Wall clock time and date at job start Fri Apr 10 2020 14:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 119.99815 * 2 1 4 4 H 1.48502 * 109.47436 * 86.14599 * 3 2 1 5 5 H 1.48502 * 109.47272 * 326.14852 * 3 2 1 6 6 H 1.48502 * 109.47140 * 206.14997 * 3 2 1 7 7 C 1.38809 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 163.47044 * 7 2 1 9 9 N 1.36933 * 120.00128 * 343.46840 * 7 2 1 10 10 C 1.47153 * 120.98142 * 333.25122 * 9 7 2 11 11 C 1.52882 * 108.60955 * 230.49640 * 10 9 7 12 12 O 1.42961 * 109.29784 * 307.94038 * 11 10 9 13 13 C 1.42958 * 114.16770 * 62.44815 * 12 11 10 14 14 H 1.09000 * 109.56290 * 57.36880 * 13 12 11 15 15 C 1.53007 * 109.51179 * 177.49401 * 13 12 11 16 16 N 1.46491 * 109.47122 * 299.74500 * 15 13 12 17 17 C 1.34782 * 120.00200 * 179.97438 * 16 15 13 18 18 O 1.21282 * 119.99777 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99876 * 179.97438 * 17 16 15 20 20 H 1.08993 * 110.66499 * 59.30494 * 19 17 16 21 21 C 1.54997 * 110.74933 * 296.08094 * 19 17 16 22 22 C 1.55824 * 102.79143 * 241.67689 * 21 19 17 23 23 H 1.08999 * 115.38794 * 158.11724 * 22 21 19 24 24 O 1.46534 * 101.24035 * 32.41895 * 22 21 19 25 25 C 1.47027 * 99.71955 * 305.81845 * 24 22 21 26 26 H 1.08996 * 115.88614 * 179.59449 * 25 24 22 27 27 C 1.55813 * 101.23490 * 305.89070 * 25 24 22 28 28 H 1.09004 * 118.20301 * 173.33693 * 27 25 24 29 29 C 1.53003 * 117.24189 * 330.03908 * 27 25 24 30 30 C 1.53417 * 60.93375 * 89.21870 * 29 27 25 31 31 H 1.09000 * 120.86625 * 112.60814 * 30 29 27 32 32 C 1.47159 * 120.98224 * 153.53373 * 9 7 2 33 33 H 0.96998 * 119.99938 * 0.02562 * 1 2 3 34 34 H 1.09000 * 109.68179 * 350.28080 * 10 9 7 35 35 H 1.09005 * 109.68118 * 110.83844 * 10 9 7 36 36 H 1.08995 * 109.58367 * 187.92159 * 11 10 9 37 37 H 1.09002 * 109.36218 * 67.81979 * 11 10 9 38 38 H 1.09005 * 109.46886 * 59.74270 * 15 13 12 39 39 H 1.09004 * 109.47097 * 179.74239 * 15 13 12 40 40 H 0.97004 * 120.00243 * 359.97438 * 16 15 13 41 41 H 1.09003 * 110.75242 * 0.02562 * 21 19 17 42 42 H 1.09010 * 110.74782 * 123.16979 * 21 19 17 43 43 H 1.08996 * 117.41132 * 196.94727 * 29 27 25 44 44 H 1.08995 * 117.40769 * 341.55794 * 29 27 25 45 45 H 1.09003 * 109.68051 * 249.16287 * 32 9 7 46 46 H 1.08997 * 109.67837 * 9.71802 * 32 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4161 2.0935 1.3969 5 1 1.4906 2.6278 -0.7799 6 1 3.5860 1.4180 -0.6170 7 6 2.0102 -1.2021 0.0005 8 1 3.0568 -1.2216 -0.2656 9 7 1.3681 -2.3633 0.3385 10 6 0.1972 -2.3497 1.2298 11 6 0.4180 -3.3763 2.3409 12 8 0.7588 -4.6368 1.7587 13 6 1.9765 -4.6255 1.0099 14 1 2.7952 -4.2960 1.6496 15 6 2.2697 -6.0343 0.4898 16 7 2.4074 -6.9539 1.6218 17 6 2.6687 -8.2579 1.4028 18 8 2.7902 -8.6698 0.2685 19 6 2.8110 -9.2037 2.5673 20 1 1.8989 -9.2194 3.1638 21 6 4.0321 -8.8191 3.4411 22 6 4.9419 -10.0799 3.3365 23 1 5.9972 -9.9139 3.5529 24 8 4.6365 -10.5407 1.9795 25 6 3.1724 -10.6368 2.0735 26 1 2.6579 -10.9632 1.1697 27 6 3.0079 -11.5559 3.3209 28 1 2.0032 -11.7217 3.7097 29 6 4.1159 -12.5762 3.5900 30 6 4.2337 -11.1710 4.1945 31 1 4.1712 -11.0188 5.2720 32 6 1.8322 -3.6624 -0.1740 33 1 -0.4850 0.8400 -0.0004 34 1 0.0795 -1.3578 1.6660 35 1 -0.6974 -2.6114 0.6647 36 1 -0.4944 -3.4811 2.9280 37 1 1.2304 -3.0417 2.9860 38 1 1.4497 -6.3639 -0.1484 39 1 3.1959 -6.0240 -0.0849 40 1 2.3106 -6.6244 2.5290 41 1 4.5374 -7.9431 3.0344 42 1 3.7284 -8.6431 4.4731 43 1 3.8879 -13.3969 4.2700 44 1 4.7824 -12.8228 2.7636 45 1 1.1049 -4.0584 -0.8828 46 1 2.7965 -3.5393 -0.6668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035445474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:45:07 Heat of formation + Delta-G solvation = -70.580220 kcal Electronic energy + Delta-G solvation = -27656.452860 eV Core-core repulsion = 23740.590589 eV Total energy + Delta-G solvation = -3915.862271 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.54777 -40.61669 -39.81916 -36.52946 -35.77582 -35.22410 -33.62170 -33.19309 -32.08956 -30.40815 -29.26809 -27.34761 -25.30723 -24.86539 -23.86444 -23.12431 -21.72547 -21.34389 -21.13924 -20.62746 -18.92198 -18.37689 -17.77345 -17.59843 -17.31500 -16.89581 -16.70261 -16.19715 -15.98542 -15.53741 -15.40988 -15.25999 -15.02090 -14.71791 -14.55850 -14.20330 -13.83986 -13.55285 -13.35709 -13.24085 -13.02696 -12.83285 -12.71484 -12.54011 -12.42049 -12.26875 -12.17451 -12.08405 -12.07500 -11.89270 -11.36831 -11.25176 -11.01576 -10.82739 -10.74015 -10.59588 -10.54631 -10.12733 -8.77378 -7.93052 -5.41153 1.46219 1.46888 1.56646 1.61024 2.04987 2.46521 2.63672 2.74567 2.80156 3.22010 3.40632 3.47221 3.54502 3.61516 3.81434 3.88900 3.96076 3.99708 4.06702 4.17628 4.22902 4.25677 4.41045 4.47471 4.50064 4.61386 4.62744 4.67526 4.70046 4.76484 4.83856 4.88508 4.89851 4.94755 4.98857 5.04133 5.15507 5.22336 5.33464 5.38033 5.53846 5.55504 5.59660 6.23636 6.31128 6.53665 7.04517 7.22598 7.72101 8.25772 9.13090 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.032651 B = 0.002320 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.337988 B =12065.772112 C =12155.553849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.973 3.027 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.267 4.267 8 H 0.072 0.928 9 N -0.613 5.613 10 C 0.142 3.858 11 C 0.055 3.945 12 O -0.388 6.388 13 C 0.082 3.918 14 H 0.071 0.929 15 C 0.141 3.859 16 N -0.709 5.709 17 C 0.518 3.482 18 O -0.584 6.584 19 C -0.127 4.127 20 H 0.138 0.862 21 C -0.127 4.127 22 C 0.078 3.922 23 H 0.145 0.855 24 O -0.401 6.401 25 C 0.105 3.895 26 H 0.117 0.883 27 C -0.199 4.199 28 H 0.144 0.856 29 C -0.138 4.138 30 C -0.181 4.181 31 H 0.150 0.850 32 C 0.116 3.884 33 H 0.252 0.748 34 H 0.067 0.933 35 H -0.003 1.003 36 H 0.111 0.889 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.083 0.917 40 H 0.415 0.585 41 H 0.073 0.927 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.016 0.984 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.984 -21.566 14.630 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.016 3.984 11 C -0.023 4.023 12 O -0.307 6.307 13 C 0.022 3.978 14 H 0.088 0.912 15 C 0.016 3.984 16 N -0.360 5.360 17 C 0.306 3.694 18 O -0.464 6.464 19 C -0.148 4.148 20 H 0.155 0.845 21 C -0.165 4.165 22 C 0.021 3.979 23 H 0.163 0.837 24 O -0.321 6.321 25 C 0.047 3.953 26 H 0.135 0.865 27 C -0.217 4.217 28 H 0.162 0.838 29 C -0.175 4.175 30 C -0.199 4.199 31 H 0.167 0.833 32 C -0.011 4.011 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.015 0.985 36 H 0.129 0.871 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.252 0.748 41 H 0.092 0.908 42 H 0.139 0.861 43 H 0.142 0.858 44 H 0.098 0.902 45 H 0.034 0.966 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.012 -21.884 13.618 26.711 hybrid contribution -0.153 1.728 -0.301 1.761 sum 6.858 -20.156 13.317 25.112 Atomic orbital electron populations 1.70192 1.06734 1.26090 1.55134 1.25853 0.96131 1.01679 1.00929 0.85177 0.78067 0.79130 0.77597 1.20808 1.22285 1.19258 1.19554 0.92874 0.85484 1.41716 0.91024 1.44331 1.33759 1.01924 1.53721 1.21240 0.87922 0.98462 0.90731 1.23087 1.00885 0.83561 0.94736 1.87792 1.41575 1.32192 1.69144 1.22608 0.87446 0.94002 0.93715 0.91156 1.21163 1.01597 0.86510 0.89142 1.45784 1.71768 1.07801 1.10692 1.20951 0.74887 0.82848 0.90718 1.90692 1.52013 1.77721 1.25973 1.22952 1.03033 0.93842 0.95016 0.84468 1.23205 0.93629 0.98147 1.01498 1.24528 1.00503 0.92176 0.80682 0.83729 1.90211 1.21922 1.87787 1.32154 1.24102 0.81292 0.92333 0.97532 0.86518 1.24317 0.96454 1.03311 0.97635 0.83847 1.22948 0.99661 0.92319 1.02530 1.24530 1.00054 0.95653 0.99642 0.83265 1.21607 0.98659 0.86406 0.94399 0.93905 0.91442 0.98456 0.87118 0.92948 0.92271 0.89917 0.74825 0.90790 0.86135 0.85825 0.90158 0.96621 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.68 11.15 21.65 0.24 -54.44 16 2 C -0.05 -2.77 4.95 84.86 0.42 -2.35 16 3 Si 0.97 43.92 29.58 68.60 2.03 45.95 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.27 -14.42 9.64 84.03 0.81 -13.61 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 9 N -0.61 -30.56 3.05 -698.32 -2.13 -32.69 16 10 C 0.14 6.74 5.41 86.22 0.47 7.20 16 11 C 0.05 1.95 6.97 71.94 0.50 2.45 16 12 O -0.39 -13.30 10.14 -148.98 -1.51 -14.81 16 13 C 0.08 2.68 2.86 30.70 0.09 2.77 16 14 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 15 C 0.14 4.11 5.37 86.38 0.46 4.57 16 16 N -0.71 -17.05 5.43 -463.05 -2.51 -19.57 16 17 C 0.52 13.49 6.99 87.66 0.61 14.10 16 18 O -0.58 -20.71 15.89 -3.04 -0.05 -20.76 16 19 C -0.13 -2.21 2.88 -9.88 -0.03 -2.24 16 20 H 0.14 1.64 8.03 -2.39 -0.02 1.63 16 21 C -0.13 -1.66 6.13 32.25 0.20 -1.46 16 22 C 0.08 1.16 5.67 32.55 0.18 1.35 16 23 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 24 O -0.40 -9.71 10.79 -148.98 -1.61 -11.32 16 25 C 0.11 2.13 4.60 32.54 0.15 2.28 16 26 H 0.12 2.79 7.75 -2.39 -0.02 2.77 16 27 C -0.20 -2.63 6.63 -9.01 -0.06 -2.69 16 28 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 29 C -0.14 -1.72 9.81 30.74 0.30 -1.42 16 30 C -0.18 -1.97 6.66 -8.86 -0.06 -2.03 16 31 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 32 C 0.12 4.78 6.03 86.35 0.52 5.30 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.07 3.54 6.17 -2.39 -0.01 3.53 16 35 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 36 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 40 H 0.42 7.98 8.36 -92.71 -0.77 7.20 16 41 H 0.07 1.12 7.76 -2.39 -0.02 1.10 16 42 H 0.12 0.81 8.04 -2.38 -0.02 0.80 16 43 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.08 1.34 7.66 -2.39 -0.02 1.32 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 Total: -1.00 -72.89 365.45 -0.76 -73.65 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.21 Total: 19.75 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 4.57 Total: 14.23 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -4.40 Total: -106.69 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -3.17 Total: -46.89 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.89 -0.76 -73.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035445474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.072 kcal (2) G-P(sol) polarization free energy of solvation -72.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds