Wall clock time and date at job start Fri Apr 10 2020 14:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48498 * 109.47281 * 268.96749 * 3 2 1 5 5 H 1.48498 * 109.46914 * 28.96891 * 3 2 1 6 6 H 1.48505 * 109.47067 * 148.96528 * 3 2 1 7 7 C 1.38811 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 343.18585 * 7 2 1 9 9 N 1.36938 * 120.00337 * 163.18643 * 7 2 1 10 10 C 1.47154 * 120.97841 * 329.48983 * 9 7 2 11 11 C 1.53290 * 108.38237 * 230.54989 * 10 9 7 12 12 O 1.42953 * 109.22986 * 307.70349 * 11 10 9 13 13 C 1.42965 * 114.16730 * 62.57665 * 12 11 10 14 14 C 1.47148 * 120.98170 * 149.51057 * 9 7 2 15 15 H 1.09003 * 109.71215 * 249.18246 * 14 9 7 16 16 C 1.52998 * 109.68567 * 9.72151 * 14 9 7 17 17 N 1.46503 * 109.47155 * 298.57748 * 16 14 9 18 18 C 1.34766 * 120.00106 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00282 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00217 * 179.97438 * 18 17 16 21 21 H 1.09002 * 110.66498 * 56.79122 * 20 18 17 22 22 C 1.54999 * 110.75135 * 293.37127 * 20 18 17 23 23 C 1.55821 * 102.78563 * 241.67361 * 22 20 18 24 24 H 1.09007 * 115.38733 * 158.83479 * 23 22 20 25 25 O 1.46526 * 101.24659 * 32.41613 * 23 22 20 26 26 C 1.46532 * 99.68567 * 305.84043 * 25 23 22 27 27 H 1.09002 * 116.26688 * 179.97438 * 26 25 23 28 28 C 1.55821 * 101.24201 * 305.84333 * 26 25 23 29 29 H 1.09000 * 118.19991 * 171.69642 * 28 26 25 30 30 C 1.53007 * 117.23907 * 328.38685 * 28 26 25 31 31 C 1.55002 * 102.78950 * 32.41174 * 28 26 25 32 32 H 1.09001 * 123.14753 * 137.45470 * 31 28 26 33 33 H 0.97005 * 120.00075 * 0.02562 * 1 2 3 34 34 H 1.09001 * 109.67700 * 110.83370 * 10 9 7 35 35 H 1.09000 * 109.68351 * 350.28161 * 10 9 7 36 36 H 1.09007 * 109.51272 * 187.77283 * 11 10 9 37 37 H 1.09005 * 109.55006 * 67.65515 * 11 10 9 38 38 H 1.09004 * 109.51132 * 177.49920 * 13 12 11 39 39 H 1.08997 * 109.51197 * 57.34889 * 13 12 11 40 40 H 1.08992 * 109.47523 * 178.57505 * 16 14 9 41 41 H 1.08998 * 109.46789 * 58.57069 * 16 14 9 42 42 H 0.96995 * 119.99569 * 359.97438 * 17 16 14 43 43 H 1.09001 * 110.74726 * 359.97438 * 22 20 18 44 44 H 1.08998 * 110.74963 * 123.35200 * 22 20 18 45 45 H 1.08996 * 117.41188 * 196.95788 * 30 28 26 46 46 H 1.08997 * 117.40814 * 341.55875 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5195 2.0338 -1.3998 5 1 1.4369 2.6588 0.6781 6 1 3.5366 1.4465 0.7218 7 6 2.0102 -1.2021 0.0005 8 1 1.5048 -2.1174 0.2715 9 7 3.3357 -1.2277 -0.3425 10 6 3.8883 -0.2595 -1.3030 11 6 4.6731 -1.0312 -2.3700 12 8 5.6130 -1.8967 -1.7290 13 6 5.0164 -2.9004 -0.9040 14 6 4.2493 -2.2244 0.2382 15 1 4.9514 -1.7317 0.9109 16 6 3.4453 -3.2725 1.0101 17 7 2.7207 -2.6230 2.1053 18 6 1.9406 -3.3552 2.9248 19 8 1.8380 -4.5518 2.7554 20 6 1.1958 -2.6872 4.0518 21 1 0.5537 -1.8929 3.6710 22 6 2.1829 -2.1392 5.1138 23 6 1.7912 -2.9377 6.3932 24 1 2.5597 -2.9909 7.1644 25 8 1.3646 -4.2142 5.8139 26 6 0.3648 -3.7296 4.8586 27 1 -0.1389 -4.4890 4.2606 28 6 -0.5605 -2.8881 5.7880 29 1 -1.3378 -2.2791 5.3264 30 6 -0.7066 -3.3536 7.2382 31 6 0.4266 -2.3402 6.8500 32 1 0.4003 -1.3133 7.2146 33 1 -0.4850 0.8401 -0.0004 34 1 4.5540 0.4315 -0.7858 35 1 3.0764 0.2950 -1.7736 36 1 5.2043 -0.3277 -3.0111 37 1 3.9842 -1.6238 -2.9721 38 1 5.7948 -3.5416 -0.4903 39 1 4.3284 -3.4999 -1.5000 40 1 4.1229 -4.0228 1.4173 41 1 2.7338 -3.7521 0.3379 42 1 2.8025 -1.6661 2.2406 43 1 3.2135 -2.3497 4.8280 44 1 2.0332 -1.0702 5.2649 45 1 -1.5472 -2.9598 7.8094 46 1 -0.4252 -4.3817 7.4659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051035977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:33 Heat of formation + Delta-G solvation = -34.610381 kcal Electronic energy + Delta-G solvation = -29029.177928 eV Core-core repulsion = 25114.875427 eV Total energy + Delta-G solvation = -3914.302501 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41076 -39.22082 -38.31927 -35.46767 -34.09246 -33.68234 -32.29547 -31.58793 -30.83373 -29.33873 -27.57932 -25.84474 -23.98057 -23.46619 -22.74279 -21.95158 -20.43886 -20.09645 -19.94199 -19.27867 -17.27914 -16.83117 -16.44290 -16.24499 -15.86241 -15.73690 -15.14474 -14.89916 -14.52786 -14.31989 -14.02980 -13.96211 -13.87539 -13.36501 -12.88234 -12.60687 -12.50233 -12.45503 -12.21191 -11.92975 -11.72149 -11.52833 -11.36785 -11.24320 -11.16926 -11.06087 -10.80346 -10.59400 -10.38510 -10.14837 -9.94561 -9.86225 -9.68307 -9.67829 -9.47196 -9.10775 -8.73714 -8.28965 -7.07706 -6.09851 -3.53137 3.16755 3.22164 3.34491 3.35612 3.43258 3.59811 3.96930 4.26900 4.36042 4.48366 4.57389 4.61664 4.63849 4.86084 4.88859 5.04088 5.15706 5.23244 5.30370 5.41313 5.47875 5.52631 5.58914 5.67882 5.71296 5.74904 5.76377 5.82070 5.86456 5.87359 5.89120 6.02118 6.05421 6.09680 6.15337 6.20024 6.22748 6.31523 6.47197 6.59000 6.69491 7.10719 7.56468 7.75554 8.18015 8.22562 8.73217 8.86543 9.52703 9.89963 11.04061 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.004246 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.938156 B = 6593.254606 C = 7618.029310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.029 3.971 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.097 0.903 9 N -0.606 5.606 10 C 0.091 3.909 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.128 3.872 15 H 0.046 0.954 16 C 0.137 3.863 17 N -0.695 5.695 18 C 0.526 3.474 19 O -0.556 6.556 20 C -0.134 4.134 21 H 0.115 0.885 22 C -0.132 4.132 23 C 0.089 3.911 24 H 0.130 0.870 25 O -0.363 6.363 26 C 0.120 3.880 27 H 0.138 0.862 28 C -0.192 4.192 29 H 0.123 0.877 30 C -0.136 4.136 31 C -0.202 4.202 32 H 0.123 0.877 33 H 0.264 0.736 34 H 0.034 0.966 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.410 0.590 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 -2.119 9.348 10.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.393 4.393 8 H 0.115 0.885 9 N -0.333 5.333 10 C -0.035 4.035 11 C -0.032 4.032 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.022 3.978 15 H 0.063 0.937 16 C 0.013 3.987 17 N -0.345 5.345 18 C 0.311 3.689 19 O -0.435 6.435 20 C -0.155 4.155 21 H 0.133 0.867 22 C -0.170 4.170 23 C 0.031 3.969 24 H 0.148 0.852 25 O -0.282 6.282 26 C 0.062 3.938 27 H 0.156 0.844 28 C -0.210 4.210 29 H 0.141 0.859 30 C -0.173 4.173 31 C -0.220 4.220 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.247 0.753 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.177 -3.083 9.234 10.593 hybrid contribution -0.057 2.048 -0.209 2.060 sum 4.120 -1.034 9.025 9.974 Atomic orbital electron populations 1.69799 1.05590 1.26609 1.52443 1.25329 0.95165 0.97394 0.99163 0.87024 0.79620 0.84714 0.77508 1.21477 1.23147 1.19646 1.19023 0.82741 0.94778 1.42808 0.88528 1.44440 1.06427 1.35420 1.47037 1.22057 0.97304 0.92795 0.91306 1.23064 0.92134 0.93153 0.94867 1.87826 1.33438 1.45679 1.63716 1.22916 0.97222 0.89971 0.92376 1.21448 0.92050 0.90807 0.93515 0.93685 1.21120 0.94884 0.94172 0.88573 1.45868 1.46864 1.12300 1.29505 1.20045 0.79340 0.86969 0.82529 1.90644 1.64505 1.15000 1.73318 1.22884 0.98016 0.99783 0.94832 0.86734 1.23136 0.99539 1.00579 0.93726 1.24169 0.94650 0.83159 0.94881 0.85232 1.90115 1.56815 1.26414 1.54832 1.23961 0.87283 0.93823 0.88693 0.84435 1.24383 1.01259 1.04057 0.91278 0.85939 1.23372 0.98461 0.99531 0.95893 1.24966 0.91501 0.99886 1.05670 0.85949 0.92628 0.94834 0.90031 0.89761 0.92999 0.89360 0.92897 0.92169 0.91175 0.75265 0.90176 0.89628 0.88245 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.34 13.97 55.49 0.78 -24.57 16 2 C 0.03 0.77 5.28 -17.43 -0.09 0.67 16 3 Si 0.88 20.50 24.28 -169.99 -4.13 16.37 16 4 H -0.29 -6.57 6.54 56.52 0.37 -6.20 16 5 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.19 6.65 56.52 0.38 -5.82 16 7 C -0.27 -6.53 7.59 -15.06 -0.11 -6.64 16 8 H 0.10 2.61 5.99 -52.48 -0.31 2.29 16 9 N -0.61 -13.00 2.78 -164.30 -0.46 -13.45 16 10 C 0.09 1.84 4.38 -3.54 -0.02 1.83 16 11 C 0.05 0.80 6.98 37.31 0.26 1.06 16 12 O -0.39 -6.86 10.74 -35.23 -0.38 -7.24 16 13 C 0.05 0.88 6.29 37.31 0.23 1.11 16 14 C 0.13 2.33 3.20 -67.42 -0.22 2.11 16 15 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 16 C 0.14 2.47 4.44 -4.04 -0.02 2.45 16 17 N -0.69 -12.80 3.80 -60.30 -0.23 -13.03 16 18 C 0.53 9.89 6.98 -10.99 -0.08 9.81 16 19 O -0.56 -12.09 15.92 5.55 0.09 -12.00 16 20 C -0.13 -2.09 2.89 -89.21 -0.26 -2.35 16 21 H 0.11 1.84 8.04 -51.93 -0.42 1.43 16 22 C -0.13 -1.69 6.16 -24.17 -0.15 -1.84 16 23 C 0.09 1.09 5.67 -23.72 -0.13 0.95 16 24 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 25 O -0.36 -5.71 10.82 -35.23 -0.38 -6.10 16 26 C 0.12 1.82 4.53 -23.72 -0.11 1.71 16 27 H 0.14 2.21 7.80 -51.93 -0.41 1.81 16 28 C -0.19 -2.37 6.50 -88.05 -0.57 -2.95 16 29 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 30 C -0.14 -1.46 9.98 -24.62 -0.25 -1.71 16 31 C -0.20 -2.23 6.79 -85.95 -0.58 -2.82 16 32 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.03 0.69 6.82 -51.93 -0.35 0.34 16 35 H 0.08 1.79 4.89 -51.93 -0.25 1.53 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.42 7.52 -51.93 -0.39 1.03 16 42 H 0.41 7.68 7.39 -40.82 -0.30 7.38 16 43 H 0.08 1.04 7.76 -51.93 -0.40 0.64 16 44 H 0.09 0.97 8.03 -51.93 -0.42 0.55 16 45 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.10 1.15 7.72 -51.93 -0.40 0.75 16 LS Contribution 351.95 15.07 5.30 5.30 Total: -1.00 -30.55 351.95 -8.57 -39.12 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -7.08 Total: 12.20 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.09 Total: 3.40 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.09 Total: -51.05 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.67 Total: -25.34 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.13 Total: 16.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.55 -8.57 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051035977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.511 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds