Wall clock time and date at job start Fri Apr 10 2020 14:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48498 * 109.47281 * 268.96749 * 3 2 1 5 5 H 1.48498 * 109.46914 * 28.96891 * 3 2 1 6 6 H 1.48505 * 109.47067 * 148.96528 * 3 2 1 7 7 C 1.38811 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00025 * 343.18585 * 7 2 1 9 9 N 1.36938 * 120.00337 * 163.18643 * 7 2 1 10 10 C 1.47154 * 120.97841 * 329.48983 * 9 7 2 11 11 C 1.53290 * 108.38237 * 230.54989 * 10 9 7 12 12 O 1.42953 * 109.22986 * 307.70349 * 11 10 9 13 13 C 1.42965 * 114.16730 * 62.57665 * 12 11 10 14 14 C 1.47148 * 120.98170 * 149.51057 * 9 7 2 15 15 H 1.09003 * 109.71215 * 249.18246 * 14 9 7 16 16 C 1.52998 * 109.68567 * 9.72151 * 14 9 7 17 17 N 1.46503 * 109.47155 * 298.57748 * 16 14 9 18 18 C 1.34766 * 120.00106 * 179.97438 * 17 16 14 19 19 O 1.21286 * 120.00282 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00217 * 179.97438 * 18 17 16 21 21 H 1.09002 * 110.66498 * 56.79122 * 20 18 17 22 22 C 1.54999 * 110.75135 * 293.37127 * 20 18 17 23 23 C 1.55821 * 102.78563 * 241.67361 * 22 20 18 24 24 H 1.09007 * 115.38733 * 158.83479 * 23 22 20 25 25 O 1.46526 * 101.24659 * 32.41613 * 23 22 20 26 26 C 1.46532 * 99.68567 * 305.84043 * 25 23 22 27 27 H 1.09002 * 116.26688 * 179.97438 * 26 25 23 28 28 C 1.55821 * 101.24201 * 305.84333 * 26 25 23 29 29 H 1.09000 * 118.19991 * 171.69642 * 28 26 25 30 30 C 1.53007 * 117.23907 * 328.38685 * 28 26 25 31 31 C 1.55002 * 102.78950 * 32.41174 * 28 26 25 32 32 H 1.09001 * 123.14753 * 137.45470 * 31 28 26 33 33 H 0.97005 * 120.00075 * 0.02562 * 1 2 3 34 34 H 1.09001 * 109.67700 * 110.83370 * 10 9 7 35 35 H 1.09000 * 109.68351 * 350.28161 * 10 9 7 36 36 H 1.09007 * 109.51272 * 187.77283 * 11 10 9 37 37 H 1.09005 * 109.55006 * 67.65515 * 11 10 9 38 38 H 1.09004 * 109.51132 * 177.49920 * 13 12 11 39 39 H 1.08997 * 109.51197 * 57.34889 * 13 12 11 40 40 H 1.08992 * 109.47523 * 178.57505 * 16 14 9 41 41 H 1.08998 * 109.46789 * 58.57069 * 16 14 9 42 42 H 0.96995 * 119.99569 * 359.97438 * 17 16 14 43 43 H 1.09001 * 110.74726 * 359.97438 * 22 20 18 44 44 H 1.08998 * 110.74963 * 123.35200 * 22 20 18 45 45 H 1.08996 * 117.41188 * 196.95788 * 30 28 26 46 46 H 1.08997 * 117.40814 * 341.55875 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.5195 2.0338 -1.3998 5 1 1.4369 2.6588 0.6781 6 1 3.5366 1.4465 0.7218 7 6 2.0102 -1.2021 0.0005 8 1 1.5048 -2.1174 0.2715 9 7 3.3357 -1.2277 -0.3425 10 6 3.8883 -0.2595 -1.3030 11 6 4.6731 -1.0312 -2.3700 12 8 5.6130 -1.8967 -1.7290 13 6 5.0164 -2.9004 -0.9040 14 6 4.2493 -2.2244 0.2382 15 1 4.9514 -1.7317 0.9109 16 6 3.4453 -3.2725 1.0101 17 7 2.7207 -2.6230 2.1053 18 6 1.9406 -3.3552 2.9248 19 8 1.8380 -4.5518 2.7554 20 6 1.1958 -2.6872 4.0518 21 1 0.5537 -1.8929 3.6710 22 6 2.1829 -2.1392 5.1138 23 6 1.7912 -2.9377 6.3932 24 1 2.5597 -2.9909 7.1644 25 8 1.3646 -4.2142 5.8139 26 6 0.3648 -3.7296 4.8586 27 1 -0.1389 -4.4890 4.2606 28 6 -0.5605 -2.8881 5.7880 29 1 -1.3378 -2.2791 5.3264 30 6 -0.7066 -3.3536 7.2382 31 6 0.4266 -2.3402 6.8500 32 1 0.4003 -1.3133 7.2146 33 1 -0.4850 0.8401 -0.0004 34 1 4.5540 0.4315 -0.7858 35 1 3.0764 0.2950 -1.7736 36 1 5.2043 -0.3277 -3.0111 37 1 3.9842 -1.6238 -2.9721 38 1 5.7948 -3.5416 -0.4903 39 1 4.3284 -3.4999 -1.5000 40 1 4.1229 -4.0228 1.4173 41 1 2.7338 -3.7521 0.3379 42 1 2.8025 -1.6661 2.2406 43 1 3.2135 -2.3497 4.8280 44 1 2.0332 -1.0702 5.2649 45 1 -1.5472 -2.9598 7.8094 46 1 -0.4252 -4.3817 7.4659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051035977.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:32 Heat of formation + Delta-G solvation = -56.415331 kcal Electronic energy + Delta-G solvation = -29030.123462 eV Core-core repulsion = 25114.875427 eV Total energy + Delta-G solvation = -3915.248035 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.51746 -40.71304 -39.79563 -37.03049 -35.34980 -35.09677 -33.77177 -33.25817 -32.25498 -30.41416 -29.25022 -27.27273 -25.24681 -25.07240 -23.99022 -23.31323 -21.59859 -21.40932 -21.16555 -20.64590 -18.83841 -18.17726 -17.85173 -17.67601 -17.26922 -17.01144 -16.75498 -16.38058 -16.03912 -15.69167 -15.54284 -15.25248 -15.21482 -14.78762 -14.43343 -14.16737 -13.92786 -13.60615 -13.48663 -13.38311 -13.20402 -12.83755 -12.80088 -12.45087 -12.34225 -12.32590 -12.26578 -12.11237 -12.04783 -11.55571 -11.37078 -11.19253 -11.09396 -11.01472 -10.65303 -10.61438 -10.47930 -9.88259 -8.86370 -8.11286 -5.51278 1.31817 1.43368 1.50943 1.71532 2.23493 2.42881 2.56741 2.77538 2.89445 3.02709 3.22587 3.44319 3.52689 3.59488 3.81065 3.90013 3.92908 3.99121 4.11866 4.15583 4.19360 4.22870 4.26761 4.39006 4.44335 4.46895 4.58475 4.61647 4.65159 4.69350 4.71255 4.81352 4.88701 4.90177 4.92129 4.93045 4.95795 5.13357 5.19829 5.30923 5.53219 5.58787 5.86557 6.18149 6.20733 6.67786 6.85132 7.34164 7.58571 7.99541 9.06186 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016219 B = 0.004246 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.938156 B = 6593.254606 C = 7618.029310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.021 4.021 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.315 1.315 6 H -0.260 1.260 7 C -0.237 4.237 8 H 0.065 0.935 9 N -0.619 5.619 10 C 0.085 3.915 11 C 0.052 3.948 12 O -0.389 6.389 13 C 0.056 3.944 14 C 0.130 3.870 15 H 0.058 0.942 16 C 0.141 3.859 17 N -0.693 5.693 18 C 0.519 3.481 19 O -0.591 6.591 20 C -0.132 4.132 21 H 0.106 0.894 22 C -0.125 4.125 23 C 0.087 3.913 24 H 0.157 0.843 25 O -0.389 6.389 26 C 0.113 3.887 27 H 0.114 0.886 28 C -0.207 4.207 29 H 0.126 0.874 30 C -0.125 4.125 31 C -0.187 4.187 32 H 0.148 0.852 33 H 0.260 0.740 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.124 0.876 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.410 0.590 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.323 -0.966 10.525 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.216 4.216 3 Si 0.768 3.232 4 H -0.208 1.208 5 H -0.245 1.245 6 H -0.184 1.184 7 C -0.366 4.366 8 H 0.082 0.918 9 N -0.346 5.346 10 C -0.040 4.040 11 C -0.026 4.026 12 O -0.307 6.307 13 C -0.022 4.022 14 C 0.025 3.975 15 H 0.076 0.924 16 C 0.016 3.984 17 N -0.342 5.342 18 C 0.307 3.693 19 O -0.473 6.473 20 C -0.154 4.154 21 H 0.124 0.876 22 C -0.163 4.163 23 C 0.030 3.970 24 H 0.175 0.825 25 O -0.308 6.308 26 C 0.055 3.945 27 H 0.131 0.869 28 C -0.225 4.225 29 H 0.144 0.856 30 C -0.162 4.162 31 C -0.205 4.205 32 H 0.165 0.835 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.141 0.859 39 H 0.065 0.935 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.246 0.754 43 H 0.097 0.903 44 H 0.125 0.875 45 H 0.142 0.858 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.433 -1.930 10.399 12.379 hybrid contribution -0.711 1.561 -0.614 1.821 sum 5.723 -0.370 9.785 11.342 Atomic orbital electron populations 1.69934 1.07251 1.26946 1.55487 1.25810 0.95519 1.00230 1.00071 0.86084 0.78530 0.80889 0.77665 1.20758 1.24467 1.18401 1.18774 0.84043 0.93328 1.40432 0.91771 1.44561 1.05828 1.36331 1.47922 1.22124 0.97085 0.92948 0.91851 1.23040 0.92202 0.93338 0.94001 1.87840 1.33435 1.45748 1.63714 1.23006 0.98020 0.89774 0.91413 1.21605 0.91549 0.90007 0.94383 0.92408 1.21098 0.94485 0.94604 0.88176 1.45888 1.46798 1.12156 1.29402 1.20656 0.78986 0.86669 0.83028 1.90614 1.65696 1.16616 1.74377 1.22877 0.98439 0.99504 0.94554 0.87599 1.23158 0.98442 1.01783 0.92945 1.24491 0.96021 0.81571 0.94930 0.82529 1.90085 1.57121 1.28551 1.55040 1.23852 0.88050 0.93484 0.89163 0.86851 1.24286 1.01977 1.04639 0.91630 0.85643 1.23472 0.99107 0.99236 0.94348 1.25097 0.90280 1.00996 1.04116 0.83489 0.93097 0.94257 0.91803 0.86574 0.93447 0.85865 0.93466 0.90103 0.94107 0.75360 0.90338 0.87527 0.85753 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.08 13.97 21.65 0.30 -54.77 16 2 C -0.02 -1.09 5.28 84.86 0.45 -0.64 16 3 Si 0.94 42.28 24.28 68.60 1.67 43.95 16 4 H -0.28 -12.22 6.54 99.48 0.65 -11.57 16 5 H -0.32 -14.77 7.11 99.48 0.71 -14.06 16 6 H -0.26 -11.05 6.65 99.48 0.66 -10.39 16 7 C -0.24 -11.81 7.59 84.03 0.64 -11.17 16 8 H 0.06 3.62 5.99 -2.91 -0.02 3.60 16 9 N -0.62 -25.98 2.78 -673.74 -1.87 -27.85 16 10 C 0.08 3.28 4.38 86.35 0.38 3.66 16 11 C 0.05 1.67 6.98 72.08 0.50 2.17 16 12 O -0.39 -12.48 10.74 -148.98 -1.60 -14.08 16 13 C 0.06 1.69 6.29 72.08 0.45 2.14 16 14 C 0.13 4.50 3.20 44.97 0.14 4.65 16 15 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 16 C 0.14 5.06 4.44 86.38 0.38 5.45 16 17 N -0.69 -25.92 3.80 -463.08 -1.76 -27.68 16 18 C 0.52 20.22 6.98 87.66 0.61 20.83 16 19 O -0.59 -26.92 15.92 -3.05 -0.05 -26.97 16 20 C -0.13 -4.23 2.89 -9.88 -0.03 -4.26 16 21 H 0.11 3.54 8.04 -2.39 -0.02 3.52 16 22 C -0.13 -3.05 6.16 32.25 0.20 -2.85 16 23 C 0.09 1.95 5.67 32.54 0.18 2.13 16 24 H 0.16 2.63 8.14 -2.38 -0.02 2.61 16 25 O -0.39 -12.20 10.82 -148.98 -1.61 -13.81 16 26 C 0.11 3.52 4.53 32.55 0.15 3.67 16 27 H 0.11 3.98 7.80 -2.39 -0.02 3.96 16 28 C -0.21 -5.00 6.50 -9.13 -0.06 -5.06 16 29 H 0.13 2.92 8.14 -2.39 -0.02 2.91 16 30 C -0.12 -2.45 9.98 31.96 0.32 -2.13 16 31 C -0.19 -3.66 6.79 -7.77 -0.05 -3.71 16 32 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 34 H 0.04 1.50 6.82 -2.39 -0.02 1.48 16 35 H 0.06 2.70 4.89 -2.39 -0.01 2.69 16 36 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.04 1.71 7.52 -2.39 -0.02 1.69 16 42 H 0.41 15.37 7.39 -92.71 -0.69 14.68 16 43 H 0.08 1.93 7.76 -2.39 -0.02 1.92 16 44 H 0.11 2.14 8.03 -2.39 -0.02 2.12 16 45 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.09 1.97 7.72 -2.39 -0.02 1.95 16 Total: -1.00 -67.73 351.95 -0.44 -68.18 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.21 Total: 38.15 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 4.27 Total: 14.88 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -3.33 Total: -110.30 kcal Atomic # 8 Polarization: -51.60 SS G_CDS: -3.26 Total: -54.86 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.67 Total: 43.95 kcal Total: -67.73 -0.44 -68.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051035977.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.761 kcal (2) G-P(sol) polarization free energy of solvation -67.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds