Wall clock time and date at job start Fri Apr 10 2020 14:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48507 * 109.46784 * 87.15930 * 3 2 1 5 5 H 1.48495 * 109.47466 * 207.15677 * 3 2 1 6 6 H 1.48500 * 109.47058 * 327.16157 * 3 2 1 7 7 C 1.38814 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 17.32523 * 7 2 1 9 9 N 1.36941 * 119.99691 * 197.32251 * 7 2 1 10 10 C 1.47155 * 120.98260 * 29.89362 * 9 7 2 11 11 C 1.53292 * 108.38391 * 129.44093 * 10 9 7 12 12 O 1.42962 * 109.22275 * 52.30173 * 11 10 9 13 13 C 1.42961 * 114.16675 * 297.41921 * 12 11 10 14 14 C 1.47153 * 120.97945 * 209.60985 * 9 7 2 15 15 H 1.09003 * 109.67870 * 110.83775 * 14 9 7 16 16 C 1.52995 * 109.68059 * 350.28173 * 14 9 7 17 17 N 1.46504 * 109.47052 * 60.67600 * 16 14 9 18 18 C 1.34784 * 119.99456 * 179.97438 * 17 16 14 19 19 O 1.21275 * 120.00195 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99205 * 179.97438 * 18 17 16 21 21 H 1.09002 * 110.67212 * 59.30066 * 20 18 17 22 22 C 1.55006 * 110.74892 * 296.07994 * 20 18 17 23 23 C 1.56255 * 102.58532 * 241.72358 * 22 20 18 24 24 H 1.09004 * 115.93612 * 158.36930 * 23 22 20 25 25 O 1.46529 * 101.32553 * 32.28991 * 23 22 20 26 26 C 1.46530 * 99.68604 * 305.89851 * 25 23 22 27 27 H 1.08996 * 115.68247 * 179.65223 * 26 25 23 28 28 C 1.55821 * 101.24597 * 305.84163 * 26 25 23 29 29 H 1.08992 * 118.19572 * 171.69066 * 28 26 25 30 30 C 1.53003 * 117.23601 * 330.27312 * 28 26 25 31 31 C 1.53009 * 60.86617 * 89.21551 * 30 28 26 32 32 H 1.08999 * 120.22186 * 114.58285 * 31 30 28 33 33 H 0.96994 * 120.00009 * 359.97438 * 1 2 3 34 34 H 1.09005 * 109.67819 * 249.16265 * 10 9 7 35 35 H 1.08998 * 109.68255 * 9.67819 * 10 9 7 36 36 H 1.08996 * 109.51505 * 172.22509 * 11 10 9 37 37 H 1.08997 * 109.51395 * 292.37811 * 11 10 9 38 38 H 1.08999 * 109.51463 * 182.50709 * 13 12 11 39 39 H 1.09002 * 109.51321 * 302.60817 * 13 12 11 40 40 H 1.09011 * 109.46799 * 180.66926 * 16 14 9 41 41 H 1.08997 * 109.47575 * 300.67397 * 16 14 9 42 42 H 0.96996 * 119.99737 * 359.97438 * 17 16 14 43 43 H 1.08999 * 110.74835 * 0.02562 * 22 20 18 44 44 H 1.09001 * 110.74647 * 123.35987 * 22 20 18 45 45 H 1.09002 * 117.40842 * 341.48249 * 30 28 26 46 46 H 1.08994 * 117.34334 * 196.97958 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4376 2.0811 1.3984 5 1 3.5765 1.4237 -0.6390 6 1 1.4790 2.6346 -0.7592 7 6 2.0103 -1.2022 -0.0005 8 1 1.5071 -2.1161 -0.2795 9 7 3.3331 -1.2291 0.3526 10 6 3.8812 -0.2567 1.3114 11 6 4.6557 -1.0240 2.3889 12 8 5.5982 -1.8960 1.7602 13 6 5.0050 -2.9029 0.9367 14 6 4.2471 -2.2353 -0.2109 15 1 4.9560 -1.7518 -0.8831 16 6 3.4447 -3.2883 -0.9778 17 7 2.7168 -2.6445 -2.0742 18 6 1.9381 -3.3820 -2.8906 19 8 1.8404 -4.5784 -2.7178 20 6 1.1888 -2.7197 -4.0180 21 1 1.8794 -2.2223 -4.6991 22 6 0.1426 -1.7170 -3.4677 23 6 -1.2056 -2.3130 -3.9862 24 1 -2.1009 -2.0096 -3.4434 25 8 -0.9102 -3.7481 -3.9720 26 6 0.3111 -3.7564 -4.7816 27 1 0.7693 -4.7333 -4.9354 28 6 -0.1715 -3.0199 -6.0672 29 1 0.5730 -2.7497 -6.8161 30 6 -1.6478 -3.1618 -6.4430 31 6 -1.2212 -2.0211 -5.5167 32 1 -1.3157 -0.9852 -5.8426 33 1 -0.4850 0.8400 0.0004 34 1 4.5527 0.4294 0.7951 35 1 3.0674 0.3033 1.7721 36 1 5.1841 -0.3182 3.0298 37 1 3.9603 -1.6113 2.9886 38 1 5.7846 -3.5488 0.5328 39 1 4.3115 -3.4975 1.5313 40 1 4.1239 -4.0382 -1.3836 41 1 2.7356 -3.7675 -0.3029 42 1 2.7953 -1.6877 -2.2125 43 1 0.1635 -1.6962 -2.3781 44 1 0.3099 -0.7208 -3.8772 45 1 -2.2015 -3.9887 -5.9984 46 1 -1.9323 -2.9008 -7.4623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051035978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:37 Heat of formation + Delta-G solvation = -35.008391 kcal Electronic energy + Delta-G solvation = -29356.754337 eV Core-core repulsion = 25442.434577 eV Total energy + Delta-G solvation = -3914.319760 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33321 -39.23320 -38.32162 -35.47089 -34.13609 -33.66228 -32.23144 -31.49661 -30.81167 -29.11965 -27.57918 -25.83544 -23.88902 -23.46261 -22.52532 -21.95231 -20.29367 -20.04381 -19.90406 -19.19888 -17.22630 -16.80683 -16.31905 -16.11390 -15.93087 -15.72288 -15.02657 -14.91873 -14.54774 -14.18560 -14.00156 -13.90833 -13.73963 -13.40731 -12.76586 -12.60825 -12.35096 -12.29839 -12.10022 -11.90638 -11.66618 -11.41356 -11.27417 -11.17190 -11.09795 -10.83934 -10.78005 -10.59619 -10.34903 -10.10375 -9.87296 -9.74666 -9.65539 -9.57961 -9.42783 -9.09417 -8.72651 -8.27681 -7.07265 -6.08138 -3.50717 3.17869 3.23735 3.35948 3.36291 3.51444 3.77326 4.06200 4.27771 4.37240 4.61002 4.68795 4.70815 4.75149 4.99136 5.10031 5.16759 5.18323 5.40287 5.40557 5.43271 5.50573 5.56072 5.65750 5.72647 5.77033 5.77586 5.82961 5.87027 5.88005 6.01590 6.07975 6.09326 6.10551 6.20825 6.26300 6.28645 6.31491 6.47884 6.69720 6.70584 6.80972 7.11663 7.56570 7.75814 8.19180 8.24051 8.74334 8.87832 9.54115 9.91112 11.04878 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.004624 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.021517 B = 6054.018342 C = 7253.104918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.032 3.968 3 Si 0.876 3.124 4 H -0.289 1.289 5 H -0.270 1.270 6 H -0.303 1.303 7 C -0.267 4.267 8 H 0.099 0.901 9 N -0.606 5.606 10 C 0.092 3.908 11 C 0.046 3.954 12 O -0.388 6.388 13 C 0.054 3.946 14 C 0.129 3.871 15 H 0.045 0.955 16 C 0.137 3.863 17 N -0.695 5.695 18 C 0.524 3.476 19 O -0.556 6.556 20 C -0.133 4.133 21 H 0.100 0.900 22 C -0.131 4.131 23 C 0.092 3.908 24 H 0.132 0.868 25 O -0.363 6.363 26 C 0.118 3.882 27 H 0.134 0.866 28 C -0.198 4.198 29 H 0.119 0.881 30 C -0.137 4.137 31 C -0.195 4.195 32 H 0.120 0.880 33 H 0.263 0.737 34 H 0.035 0.965 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.411 0.589 43 H 0.112 0.888 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.299 -1.949 -8.423 9.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.168 4.168 3 Si 0.707 3.293 4 H -0.217 1.217 5 H -0.195 1.195 6 H -0.232 1.232 7 C -0.395 4.395 8 H 0.116 0.884 9 N -0.333 5.333 10 C -0.033 4.033 11 C -0.033 4.033 12 O -0.307 6.307 13 C -0.025 4.025 14 C 0.022 3.978 15 H 0.063 0.937 16 C 0.012 3.988 17 N -0.347 5.347 18 C 0.309 3.691 19 O -0.436 6.436 20 C -0.155 4.155 21 H 0.118 0.882 22 C -0.169 4.169 23 C 0.035 3.965 24 H 0.150 0.850 25 O -0.281 6.281 26 C 0.060 3.940 27 H 0.152 0.848 28 C -0.216 4.216 29 H 0.137 0.863 30 C -0.174 4.174 31 C -0.214 4.214 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.248 0.752 43 H 0.130 0.870 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.155 -2.866 -8.150 9.197 hybrid contribution 0.317 1.989 -0.123 2.018 sum 3.471 -0.876 -8.273 9.015 Atomic orbital electron populations 1.69801 1.05402 1.26501 1.52285 1.25283 0.95158 0.97175 0.99231 0.87071 0.79912 0.84999 0.77318 1.21698 1.19529 1.23153 1.19058 0.82962 0.94873 1.42573 0.88362 1.44430 1.06797 1.34568 1.47483 1.22037 0.97307 0.92772 0.91227 1.23070 0.92116 0.93061 0.95016 1.87828 1.33476 1.45184 1.64173 1.22838 0.97294 0.89951 0.92419 1.21353 0.92080 0.90704 0.93643 0.93724 1.21123 0.94815 0.94198 0.88641 1.45914 1.46718 1.12349 1.29673 1.20140 0.78908 0.86960 0.83044 1.90635 1.64363 1.15175 1.73379 1.22871 0.98161 0.97934 0.96496 0.88201 1.23269 0.91782 0.97202 1.04640 1.24329 0.98621 0.81224 0.92376 0.85048 1.90140 1.41984 1.23851 1.72116 1.23923 0.85216 0.98076 0.86791 0.84818 1.24303 0.92944 1.04085 1.00263 0.86277 1.22775 0.95382 1.00263 0.98950 1.24362 1.05723 0.96377 0.94898 0.86166 0.92666 0.94745 0.90197 0.89777 0.93007 0.89364 0.92935 0.92197 0.91204 0.75188 0.86999 0.90265 0.88302 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.32 13.97 55.49 0.78 -23.54 16 2 C 0.03 0.80 5.28 -17.43 -0.09 0.71 16 3 Si 0.88 20.19 24.31 -169.99 -4.13 16.06 16 4 H -0.29 -6.65 6.70 56.52 0.38 -6.27 16 5 H -0.27 -6.13 6.40 56.52 0.36 -5.76 16 6 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.27 -6.43 7.57 -15.06 -0.11 -6.55 16 8 H 0.10 2.61 5.93 -52.49 -0.31 2.30 16 9 N -0.61 -12.85 2.79 -164.54 -0.46 -13.31 16 10 C 0.09 1.86 4.38 -3.53 -0.02 1.84 16 11 C 0.05 0.79 6.98 37.31 0.26 1.05 16 12 O -0.39 -6.85 10.74 -35.23 -0.38 -7.22 16 13 C 0.05 0.87 6.27 37.09 0.23 1.10 16 14 C 0.13 2.32 3.19 -67.64 -0.22 2.10 16 15 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.14 2.44 4.43 -4.04 -0.02 2.43 16 17 N -0.70 -12.74 3.72 -60.29 -0.22 -12.97 16 18 C 0.52 9.83 6.99 -10.98 -0.08 9.76 16 19 O -0.56 -12.09 15.89 5.56 0.09 -12.00 16 20 C -0.13 -2.09 2.88 -89.20 -0.26 -2.35 16 21 H 0.10 1.31 8.04 -51.93 -0.42 0.90 16 22 C -0.13 -2.20 6.17 -23.92 -0.15 -2.34 16 23 C 0.09 1.45 5.67 -23.48 -0.13 1.31 16 24 H 0.13 2.00 8.14 -51.93 -0.42 1.58 16 25 O -0.36 -6.54 10.78 -35.23 -0.38 -6.92 16 26 C 0.12 1.81 4.57 -23.72 -0.11 1.71 16 27 H 0.13 2.06 7.75 -51.93 -0.40 1.66 16 28 C -0.20 -2.43 6.63 -88.05 -0.58 -3.02 16 29 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 30 C -0.14 -1.58 9.80 -26.72 -0.26 -1.85 16 31 C -0.20 -2.47 6.63 -88.05 -0.58 -3.05 16 32 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.03 0.71 6.71 -51.93 -0.35 0.36 16 35 H 0.08 1.74 4.94 -51.93 -0.26 1.48 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 40 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 41 H 0.07 1.42 7.57 -51.93 -0.39 1.02 16 42 H 0.41 7.64 7.32 -40.82 -0.30 7.34 16 43 H 0.11 2.36 7.76 -51.93 -0.40 1.96 16 44 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 45 H 0.10 1.25 7.65 -51.93 -0.40 0.86 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 351.30 15.07 5.29 5.29 Total: -1.00 -29.53 351.30 -8.60 -38.13 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -7.07 Total: 13.63 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.12 Total: 2.86 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.09 Total: -49.82 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.67 Total: -26.14 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.13 Total: 16.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.53 -8.60 -38.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051035978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.124 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds