Wall clock time and date at job start Fri Apr 10 2020 14:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 119.99958 * 2 1 4 4 H 1.48507 * 109.46784 * 87.15930 * 3 2 1 5 5 H 1.48495 * 109.47466 * 207.15677 * 3 2 1 6 6 H 1.48500 * 109.47058 * 327.16157 * 3 2 1 7 7 C 1.38814 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00200 * 17.32523 * 7 2 1 9 9 N 1.36941 * 119.99691 * 197.32251 * 7 2 1 10 10 C 1.47155 * 120.98260 * 29.89362 * 9 7 2 11 11 C 1.53292 * 108.38391 * 129.44093 * 10 9 7 12 12 O 1.42962 * 109.22275 * 52.30173 * 11 10 9 13 13 C 1.42961 * 114.16675 * 297.41921 * 12 11 10 14 14 C 1.47153 * 120.97945 * 209.60985 * 9 7 2 15 15 H 1.09003 * 109.67870 * 110.83775 * 14 9 7 16 16 C 1.52995 * 109.68059 * 350.28173 * 14 9 7 17 17 N 1.46504 * 109.47052 * 60.67600 * 16 14 9 18 18 C 1.34784 * 119.99456 * 179.97438 * 17 16 14 19 19 O 1.21275 * 120.00195 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99205 * 179.97438 * 18 17 16 21 21 H 1.09002 * 110.67212 * 59.30066 * 20 18 17 22 22 C 1.55006 * 110.74892 * 296.07994 * 20 18 17 23 23 C 1.56255 * 102.58532 * 241.72358 * 22 20 18 24 24 H 1.09004 * 115.93612 * 158.36930 * 23 22 20 25 25 O 1.46529 * 101.32553 * 32.28991 * 23 22 20 26 26 C 1.46530 * 99.68604 * 305.89851 * 25 23 22 27 27 H 1.08996 * 115.68247 * 179.65223 * 26 25 23 28 28 C 1.55821 * 101.24597 * 305.84163 * 26 25 23 29 29 H 1.08992 * 118.19572 * 171.69066 * 28 26 25 30 30 C 1.53003 * 117.23601 * 330.27312 * 28 26 25 31 31 C 1.53009 * 60.86617 * 89.21551 * 30 28 26 32 32 H 1.08999 * 120.22186 * 114.58285 * 31 30 28 33 33 H 0.96994 * 120.00009 * 359.97438 * 1 2 3 34 34 H 1.09005 * 109.67819 * 249.16265 * 10 9 7 35 35 H 1.08998 * 109.68255 * 9.67819 * 10 9 7 36 36 H 1.08996 * 109.51505 * 172.22509 * 11 10 9 37 37 H 1.08997 * 109.51395 * 292.37811 * 11 10 9 38 38 H 1.08999 * 109.51463 * 182.50709 * 13 12 11 39 39 H 1.09002 * 109.51321 * 302.60817 * 13 12 11 40 40 H 1.09011 * 109.46799 * 180.66926 * 16 14 9 41 41 H 1.08997 * 109.47575 * 300.67397 * 16 14 9 42 42 H 0.96996 * 119.99737 * 359.97438 * 17 16 14 43 43 H 1.08999 * 110.74835 * 0.02562 * 22 20 18 44 44 H 1.09001 * 110.74647 * 123.35987 * 22 20 18 45 45 H 1.09002 * 117.40842 * 341.48249 * 30 28 26 46 46 H 1.08994 * 117.34334 * 196.97958 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4376 2.0811 1.3984 5 1 3.5765 1.4237 -0.6390 6 1 1.4790 2.6346 -0.7592 7 6 2.0103 -1.2022 -0.0005 8 1 1.5071 -2.1161 -0.2795 9 7 3.3331 -1.2291 0.3526 10 6 3.8812 -0.2567 1.3114 11 6 4.6557 -1.0240 2.3889 12 8 5.5982 -1.8960 1.7602 13 6 5.0050 -2.9029 0.9367 14 6 4.2471 -2.2353 -0.2109 15 1 4.9560 -1.7518 -0.8831 16 6 3.4447 -3.2883 -0.9778 17 7 2.7168 -2.6445 -2.0742 18 6 1.9381 -3.3820 -2.8906 19 8 1.8404 -4.5784 -2.7178 20 6 1.1888 -2.7197 -4.0180 21 1 1.8794 -2.2223 -4.6991 22 6 0.1426 -1.7170 -3.4677 23 6 -1.2056 -2.3130 -3.9862 24 1 -2.1009 -2.0096 -3.4434 25 8 -0.9102 -3.7481 -3.9720 26 6 0.3111 -3.7564 -4.7816 27 1 0.7693 -4.7333 -4.9354 28 6 -0.1715 -3.0199 -6.0672 29 1 0.5730 -2.7497 -6.8161 30 6 -1.6478 -3.1618 -6.4430 31 6 -1.2212 -2.0211 -5.5167 32 1 -1.3157 -0.9852 -5.8426 33 1 -0.4850 0.8400 0.0004 34 1 4.5527 0.4294 0.7951 35 1 3.0674 0.3033 1.7721 36 1 5.1841 -0.3182 3.0298 37 1 3.9603 -1.6113 2.9886 38 1 5.7846 -3.5488 0.5328 39 1 4.3115 -3.4975 1.5313 40 1 4.1239 -4.0382 -1.3836 41 1 2.7356 -3.7675 -0.3029 42 1 2.7953 -1.6877 -2.2125 43 1 0.1635 -1.6962 -2.3781 44 1 0.3099 -0.7208 -3.8772 45 1 -2.2015 -3.9887 -5.9984 46 1 -1.9323 -2.9008 -7.4623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051035978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:44:36 Heat of formation + Delta-G solvation = -56.051688 kcal Electronic energy + Delta-G solvation = -29357.666843 eV Core-core repulsion = 25442.434577 eV Total energy + Delta-G solvation = -3915.232266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54622 -40.72405 -39.80042 -37.02399 -35.32396 -35.23652 -33.78995 -33.18041 -32.25359 -30.34374 -29.23640 -27.26829 -25.21995 -25.06663 -23.88656 -23.34027 -21.57014 -21.36377 -21.15724 -20.59977 -18.86111 -18.13182 -17.77002 -17.59968 -17.38030 -17.00701 -16.67223 -16.39319 -16.04260 -15.63932 -15.50293 -15.33823 -15.13264 -14.78913 -14.40990 -14.18307 -13.87550 -13.58286 -13.43667 -13.36697 -13.16647 -12.83046 -12.73293 -12.43236 -12.31610 -12.28636 -12.24119 -12.06918 -12.00987 -11.51151 -11.36705 -11.22668 -11.07126 -10.94518 -10.68205 -10.58998 -10.44809 -9.85513 -8.83863 -8.05621 -5.45221 1.33130 1.45303 1.51777 1.72194 2.25953 2.45713 2.67526 2.79676 2.91151 3.03763 3.27067 3.51557 3.54548 3.64298 3.87028 3.93128 3.94115 4.04066 4.13973 4.18720 4.21715 4.27345 4.28333 4.39798 4.42590 4.46909 4.60494 4.63651 4.68353 4.69303 4.73302 4.85338 4.89112 4.91172 4.92959 4.96795 5.09409 5.21114 5.26564 5.36016 5.57916 5.61053 5.89844 6.18549 6.25034 6.70230 6.88542 7.36369 7.62923 8.03405 9.10485 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016712 B = 0.004624 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.021517 B = 6054.018342 C = 7253.104918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.012 4.012 3 Si 0.931 3.069 4 H -0.288 1.288 5 H -0.259 1.259 6 H -0.315 1.315 7 C -0.239 4.239 8 H 0.066 0.934 9 N -0.619 5.619 10 C 0.087 3.913 11 C 0.052 3.948 12 O -0.389 6.389 13 C 0.056 3.944 14 C 0.130 3.870 15 H 0.058 0.942 16 C 0.141 3.859 17 N -0.693 5.693 18 C 0.518 3.482 19 O -0.592 6.592 20 C -0.125 4.125 21 H 0.135 0.865 22 C -0.124 4.124 23 C 0.081 3.919 24 H 0.124 0.876 25 O -0.399 6.399 26 C 0.110 3.890 27 H 0.128 0.872 28 C -0.186 4.186 29 H 0.151 0.849 30 C -0.127 4.127 31 C -0.193 4.193 32 H 0.143 0.857 33 H 0.259 0.741 34 H 0.039 0.961 35 H 0.062 0.938 36 H 0.116 0.884 37 H 0.046 0.954 38 H 0.124 0.876 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.410 0.590 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.450 -1.149 -10.167 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.209 4.209 3 Si 0.762 3.238 4 H -0.215 1.215 5 H -0.184 1.184 6 H -0.244 1.244 7 C -0.368 4.368 8 H 0.083 0.917 9 N -0.346 5.346 10 C -0.038 4.038 11 C -0.026 4.026 12 O -0.307 6.307 13 C -0.022 4.022 14 C 0.025 3.975 15 H 0.076 0.924 16 C 0.016 3.984 17 N -0.343 5.343 18 C 0.305 3.695 19 O -0.473 6.473 20 C -0.146 4.146 21 H 0.152 0.848 22 C -0.162 4.162 23 C 0.024 3.976 24 H 0.141 0.859 25 O -0.318 6.318 26 C 0.052 3.948 27 H 0.145 0.855 28 C -0.204 4.204 29 H 0.168 0.832 30 C -0.164 4.164 31 C -0.211 4.211 32 H 0.161 0.839 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.065 0.935 38 H 0.142 0.858 39 H 0.064 0.936 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.247 0.753 43 H 0.080 0.920 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.359 -2.067 -9.881 11.429 hybrid contribution -0.358 1.616 0.506 1.731 sum 5.001 -0.450 -9.375 10.635 Atomic orbital electron populations 1.69932 1.06895 1.26673 1.54961 1.25698 0.95461 0.99659 1.00071 0.86184 0.78961 0.81576 0.77091 1.21506 1.18369 1.24436 1.18773 0.84164 0.93413 1.40461 0.91658 1.44555 1.06273 1.35487 1.48312 1.22090 0.97026 0.92906 0.91808 1.23040 0.92185 0.93250 0.94142 1.87841 1.33461 1.45259 1.64183 1.22934 0.98116 0.89760 0.91437 1.21512 0.91593 0.89896 0.94527 0.92404 1.21101 0.94390 0.94658 0.88217 1.45927 1.46622 1.12208 1.29540 1.20733 0.78520 0.86644 0.83612 1.90608 1.65482 1.16751 1.74494 1.22901 0.98134 0.97765 0.95841 0.84762 1.23098 0.93158 0.98460 1.01521 1.24403 0.97748 0.80211 0.95232 0.85874 1.90104 1.43250 1.25247 1.73194 1.24055 0.84292 0.98141 0.88304 0.85456 1.24316 0.93885 1.02875 0.99323 0.83184 1.22901 0.94497 0.98935 1.00046 1.24283 1.06698 0.97864 0.92228 0.83935 0.93197 0.94287 0.92020 0.86645 0.93533 0.85782 0.93630 0.89816 0.94431 0.75298 0.92031 0.88646 0.90017 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.07 13.97 21.65 0.30 -52.77 16 2 C -0.01 -0.65 5.28 84.86 0.45 -0.20 16 3 Si 0.93 41.99 24.31 68.60 1.67 43.66 16 4 H -0.29 -12.77 6.70 99.48 0.67 -12.11 16 5 H -0.26 -11.08 6.40 99.48 0.64 -10.44 16 6 H -0.32 -14.73 7.11 99.48 0.71 -14.02 16 7 C -0.24 -11.81 7.57 84.03 0.64 -11.17 16 8 H 0.07 3.67 5.93 -2.91 -0.02 3.65 16 9 N -0.62 -25.92 2.79 -674.50 -1.88 -27.81 16 10 C 0.09 3.36 4.38 86.35 0.38 3.74 16 11 C 0.05 1.68 6.98 72.08 0.50 2.18 16 12 O -0.39 -12.54 10.74 -148.98 -1.60 -14.14 16 13 C 0.06 1.68 6.27 71.94 0.45 2.13 16 14 C 0.13 4.49 3.19 44.82 0.14 4.64 16 15 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 16 C 0.14 5.03 4.43 86.38 0.38 5.41 16 17 N -0.69 -25.69 3.72 -463.04 -1.72 -27.42 16 18 C 0.52 19.84 6.99 87.66 0.61 20.45 16 19 O -0.59 -26.53 15.89 -3.02 -0.05 -26.58 16 20 C -0.13 -3.89 2.88 -9.88 -0.03 -3.92 16 21 H 0.13 3.21 8.04 -2.39 -0.02 3.19 16 22 C -0.12 -4.26 6.17 32.41 0.20 -4.06 16 23 C 0.08 2.61 5.67 32.70 0.19 2.80 16 24 H 0.12 4.00 8.14 -2.38 -0.02 3.98 16 25 O -0.40 -14.87 10.78 -148.98 -1.61 -16.47 16 26 C 0.11 3.33 4.57 32.55 0.15 3.47 16 27 H 0.13 3.95 7.75 -2.39 -0.02 3.93 16 28 C -0.19 -4.06 6.63 -9.13 -0.06 -4.12 16 29 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 30 C -0.13 -2.60 9.80 30.60 0.30 -2.30 16 31 C -0.19 -4.46 6.63 -9.13 -0.06 -4.52 16 32 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.04 1.50 6.71 -2.38 -0.02 1.48 16 35 H 0.06 2.63 4.94 -2.39 -0.01 2.62 16 36 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 40 H 0.08 2.59 8.14 -2.38 -0.02 2.58 16 41 H 0.04 1.58 7.57 -2.39 -0.02 1.57 16 42 H 0.41 15.28 7.32 -92.71 -0.68 14.60 16 43 H 0.06 2.76 7.76 -2.39 -0.02 2.74 16 44 H 0.10 2.87 8.04 -2.39 -0.02 2.86 16 45 H 0.08 1.99 7.65 -2.39 -0.02 1.97 16 46 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -66.94 351.30 -0.44 -67.38 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: 0.21 Total: 39.61 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 4.24 Total: 14.53 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.31 Total: -108.00 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -3.25 Total: -57.19 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.67 Total: 43.66 kcal Total: -66.94 -0.44 -67.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051035978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.329 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds